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At least 595 records · Page 33

Global distributed file append using log-structured file system

Techniques are provided for globally appending data from a group of distributed processes to a shared file using a log-structured file system. Data generated by a plurality of processes in a parallel computing system are appended to a shared file by storing the data to the shared file using a log-structured file system (such as a Parallel Log-Structured File System (PLFS)); and generating an index entry for the data, the index entry comprising a logical offset entry and a timestamp entry indicating a time of the storage, wherein the logical offset entry is resolved at read time. The logical offset entry can be populated with an append placeholder that is resolved when the shared file is read. At read time, a plurality of the index entries associated with the shared file can be sorted using the timestamp entry to deliver the requested shared file to a requesting application.

97 MATHEMATICS AND COMPUTING↗

Collective memory transfer devices and methods for multiple-core processors

This disclosure provides systems, methods, and apparatus for collective memory transfers. A control unit may be configured to coordinate a transfer of data between a memory and processor cores. For a read data transfer operation, the control unit may receive a trigger packet identifying a read data transfer operation and identifying a first plurality of data lines based on data values included in the trigger packet. The control unit may read the first plurality of data lines from the memory sequentially and send a second plurality of data lines to the processor cores. For a write data transfer operation, the control unit may send a request for at least one data line to a plurality of processor cores, may receive and reorder the requested data lines, and may write the data lines to a memory. The control unit may determine a mapping between processor cores and the memory.

97 MATHEMATICS AND COMPUTING↗

Method and apparatus for reducing memory access latency

Logic such as a memory controller writes primary data from an incoming write request as well as corresponding replicated primary data (which is a copy of the primary data) to one or more different memory banks of random access memory in response to determining a memory access contention condition for the address (including a range of addresses) corresponding to the incoming write request. When the memory bank containing the primary data is busy servicing a write request, such as to another row of memory in the bank, a read request for the primary data is serviced by reading the replicated primary data from the different memory bank of the random access memory to service the incoming read request.

97 MATHEMATICS AND COMPUTING↗

Memory access system

A method and system for accessing a memory for a data processing system. The method comprises sending a read request for a plurality of locations in the memory to read the plurality of locations in parallel based on an upper bound for reading the memory. The upper bound for a number of locations is based on a group of constraints for the memory. The method receives a summed value of a plurality of memory values in the plurality of locations in the memory.

97 MATHEMATICS AND COMPUTING↗

Method and apparatus for mitigating row hammer attacks

An integrated circuit includes an aggressor wordline cache and logic that determines a candidate upper adjacent address and a candidate lower adjacent address of a target memory row corresponding to a read request to memory. When at least one of the candidate upper adjacent address or the candidate lower adjacent address are determined to be a victim row, the logic checks the aggressor wordline cache for a cache hit for the target memory row. When there is a cache hit in the aggressor wordline cache, the logic sends a corresponding cache line as a response to the read request, otherwise the logic causes a read of content from the memory. In certain examples, the logic includes a stored bit array and a hash function-based filter, which determines whether any of the candidate upper adjacent address and the candidate lower adjacent address are victim rows represented in the stored bit array.

SeyedzadehDelcheh, SeyedMohammad↗

Register-Like Block RAM with Boundary Coverage and Its Applications for High Energy Physics Trigger Systems

In high energy physics experiment trigger systems, block memories are utilized for various purposes, especially in binned searching algorithms. In these algorithms, the storages are demanded to perform like a large set of registers. The writing and reading operation must be performed in single clock cycle and once an event is processed, the memory must be globally reset. These demands can be fulfilled with registers but the cost of using registers for large memory is unaffordable. Another common requirement is the boundary coverage feature during reading process. When a memory bin is addressed, the stored contents in the addressed bin and its neighboring bin must be output simultaneously. In this paper, a register-like block memory design scheme is described, which allows updating memory locations in single clock cycle, reading two adjacent bins and effectively refreshing entire memory within a single clock. The implementation and test results are presented.

72 PHYSICS OF ELEMENTARY PARTICLES AND FIELDS↗

Collaborative RFID reader using code divisional multiple access (CDMA) and methods for same

The present disclosure provides collaborative radiofrequency identification (RFID) readers that employ code division multiple access (CDMA) encoding to simultaneously broadcast to and read responses from tags in an overlapping reading zone with improved data synchronization and read yield rates. In some embodiments, a harmonic backscattering scheme is used to enable the system to have a much higher signal-to-noise ratio (SNR) and sensitivity, while the reader CDMA protocol can be integrated with an initial TDMA polling process or alternative tag CDMA scheme.

Kan, Edwin C.↗

Firmware development for the ATLAS TileCal sROD

TileCal is the central hadronic calorimeter of the ATLAS experiment at the Large Hadron Collider (LHC) at CERN. A main upgrade of the LHC (also called Phase-II) is planned in order to increase the instantaneous luminosity in 2022. At the TileCal level, the upgrade involves the redesign of the complete read-out architecture, affecting both the front-end and the back-end electronics. In the new read-out architecture, the front-end electronics will transmit digitized information of the full detector to the back-end system every single bunch crossing. Thus, the back-end system must provide digital calibrated information to the first level of trigger. Having all detector data per bunch crossing in the back-end will increase the precision and granularity of the trigger information, improving this way the trigger efficiencies. A reduced part of the detector, 1/256 of the total, will be equipped with the new electronics during 2014 to evaluate the proposed architecture in real conditions in the so-called 'demonstrator project'. The upgraded version of the Read-Out Driver (sROD) will be the core element of the back-end electronics in Phase-II. The sROD demonstrator is a prototype that is being developed to validate in the demonstrator project the future sROD for Phase-II. This module includes two Xilinx Series 7 Field Programmable Gate Arrays (FPGAs) for data receiving and processing and will be installed and working in an ATCA framework. A complete description of the sROD functionality in terms of firmware will be introduced. In addition, the status of the firmware development and a summary of the main milestones achieved and the future plans will be presented. (authors)

43 PARTICLE ACCELERATORS↗

Using spatial statistical methods to determine an effective minimum detectable activity - 15681

Instrument minimum detectable activity (MDA) is generally established by collecting multiple measurements over time of a single representative background location to estimate a probability distribution of instrument readings. A reading that is considered to be greater than would be expected from the background probability distribution (i.e., a low-probability event) is deemed to be sufficiently unlikely that it must be attributable to added radioactivity and is therefore used as the instrument MDA. An effective MDA can be determined from spatially distributed data that are much lower than the instrument MDA. This has been accomplished using a large number of spatially distributed data points (from a radiation survey) where patterns of elevated survey readings can be distinguished from background at levels. Given the variation of the instrument response and the relatively low regulatory action levels, it is vital to establish MDA thresholds that are well below corrective action levels. Processing of radiological survey data with the use of histogram binning and geo-statistics in enabling pattern recognition can be used to establish effective field MDAs that are much lower than instrument MDAs. (authors)

46 INSTRUMENTATION RELATED TO NUCLEAR SCIENCE AND ↗

iOS Heart Rate Monitor

The objective of this research project is to create a heart rate monitor mobile application (app) that allows the user to receive an accurate heart rate reading by placing their finger on the camera for about fifteen seconds. The app will be designed to read the heart rate through blood flow, and because blood flow is directly proportional with blood pressure, this app will also allow the user to get a blood pressure estimate. This enables anyone to have an understanding of their health issues if any are present. The overall goal to integrate this heart rate and blood pressure monitoring app with a personal dosimeter to build a comprehensive health monitoring app. The personal dosimeter Bluetooth connection function is being developed by another student group at Texas A and M University-Kingsville. This allows a user to transfer radiation readings from the Geiger counter to an iOS device while being able to monitor their health as they are exposed to radiation. This app's Bluetooth Geiger counter and heart rate/blood pressure monitor features would prove beneficial to individuals in the nuclear industry who are exposed to various levels of radiation. The combination of those functions will allow workers to measure their heart rate and blood pressure conveniently and within short periods of time. The people this app can help include nuclear power plant workers, radiology technicians, hazardous materials removal workers, and nuclear medicine technologists. We strive to create a mobile app that will allow a nuclear field worker to have a faster and more efficient health monitoring method. (authors)

46 INSTRUMENTATION RELATED TO NUCLEAR SCIENCE AND ↗

Particle Size Analysis and Distribution

Scanning Electron Microscope (SEM) is a instrument used for examining samples at magnifications from 32 X to 500,000 X (for our instrument). The SEM is attached with an electron gun and is directed onto the sample. The sample then produces an image where it is read on the monitor. The electron gun is positioned at the top because it needs to shoot at the sample that is being tested. The electrons are then shot in a downward motion traveling through several lenses, such as the condenser lens for a more precise reading. Once the samples have been read by the instrument, it will show a picture that has a certain number of particles. Particle size distribution have many uses that are essential to life habits (health) or even conventional use for example construction. Here are just a few examples of how particle size analysis and distribution are being used even today. This Standard Reference Material (SRM) is primarily intended for use in the calibration of equipment used to measure particle size distributions (PSD) in the 9 μm to 30 μm range. A unit of SRM 1984 consists of a single bottle containing approximately 14 g of tungsten carbide/cobalt powder. Certified values: The PSD values at five mass percentiles were measured by scanning electron microscopy (SEM) and laser light scattering (LLS). The NIST certified PSD values by SEM are listed. These certified values were determined by the measurement of over 10 000 individual particles from three bottles. Comparing the certified NIST SRM 1984 tungsten carbide/cobalt powder with our results are almost identical. This is great because more accurate work can be done and proves that our laboratory is able to reproduce NIST results. In conclusion, the scanning electron microscope is used to capture the sampled element and display it to be counted. Without the use of particle distribution, it would be a difficult time to get necessities such as medicine, asthma pumps, constructing materials, or as simple as ink. Overall, our study is an experimental comparison of the techniques we have in house, which are LLS and SEM (combined with the NIH ImageJ software) using the NIST SRM-1984 as a common, well characterized sample so that we have an idea of how the results from the techniques compare.

46 INSTRUMENTATION RELATED TO NUCLEAR SCIENCE AND ↗

Simulation of DWPF Chemical Process Cell Using a Reaction Calorimeter

The Defense Waste Processing Facility (DWPF) converts liquid radioactive waste into glass using a Sludge Receipt Adjustment Tank (SRAT) and Slurry Mix Evaporator (SME) in addition to other processes. The SRAT and SME processes can be simulated on a small-scale using the Mettler-Toledo Reaction Calorimeter (RC1). This equipment is able to automate the execution and monitoring of experiments involving nonradioactive chemical simulants. During the chemical processing of sludge in the SRAT process, foam begins to form and can foam over the reaction vessel. The current antifoam used at DWPF creates a risk of increased flammability and has a limited pH range. Usually, mercury is circulated back into the reaction vessel during the SRAT process, making it difficult to remove. To combat foam over, novel antifoams will be tested during the boil-up process using the RC1. To improve mercury extraction, 3D-printed coalescer columns will be tested within the Mercury Water Wash Tank (MWWT) of the RC1. Testing of Simulant Sludge Batch 6 (SB6) was performed to ensure: the sludge would form a stable foam at boiling during full SRAT/SME runs; the antifoam would reduce the amount of foam within the vessel The sludge and a Precipitate Reactor Feed Tank (PRFT) simulant with monosodium titanate (MST) were mixed separately, combined, and then heated to boiling. As shown below, the antifoam used was able to eliminate the foam within the vessel, as expected. The FormLabs Form2 3D Printer can be used to create roughly 3-inch tall and 1-inch diameter columns from clear and ceramic resins. The columns will utilize chemical and physical forces to draw the mercury out of a condensed offgas stream leaving the RC1 reaction vessel. These columns will be tested during full SRAT/SME runs on the basis of how well they are able to collect elemental mercury. In preparation for full-scale runs, the RC1 equipment was assembled onto a custom table and tested with water runs. The software used to control automation, iControl, has a user-friendly interface that allows the experiment to be altered as needed. An example of the data recorded during an experimental run is represented in Figure 1 below. Water runs were utilized as a way to prove if the RC1 system was functioning in the following areas: Boil-up rates, Chemical additions using pumps, Temperature readings, Balance readings, Probe readings, Offgas system, Agitation. Future Plans: Five novel antifoams will be tested during full SRAT/SME runs. The most effective antifoam will be utilized in DWPF's Chemical Process Cell. The design of the Mercury Extraction Coalescer can be further manipulated to increase the extraction of not only elemental mercury, but other heavy metals in environmental remediation processes as well.

12 MANAGEMENT OF RADIOACTIVE AND NON-RADIOACTIVE W↗

Primary coolant flow measurement for integral pressurized water reactors using ultrasonic technique - 182

Several pressurized water reactor (PWR) systems under development employ integral primary coolant loop designs, where the primary coolant does not leave the reactor pressure vessel during operation (I{sup 2}S-LWR, mPower, NuScale). The absence of primary coolant piping inhibits traditional pressurized water reactor primary coolant flow measurement, in which the differential pressure across the steam generator is correlated to flow rate. To address this, a transit time, reflection mode, ultrasonic flow meter is proposed. An experimental flow loop utilizing a test section representative of a thin azimuthal slice of the down-comer region of an integral PWR has been constructed to test the efficacy of the General Electric AT600 ultrasonic flow meter (UFM) in such an application. A Great Plains Industries TM300 turbine flow meter (TFM), reporting volumetric flow rate and installed in-line with the flow loop piping, is used as the reference meter. UFM performance is affected by several factors, including flow development and symmetry. The UFM was installed on three locations along the flow path of water through the test section. The meter performed the best at the downstream end of the test section, where the fluid flow is the most developed. Performance, measured by percent error in UFM average reading with respect to the TFM average reading, generally improved with increasing flow rate at all locations, though absolute difference between meter readings increased with flow rate. This research suggests that ultrasonic approaches hold promise for non-invasive measurement of primary coolant flow in integral PWRs. (authors)

21 SPECIFIC NUCLEAR REACTORS AND ASSOCIATED PLANTS↗

The LLNL nuclear data infrastructure for the GNDS data format

The next generation of nuclear data infrastructure tools at the Livermore National Laboratory (LLNL) consists of pipeline of codes that read and process nuclear data from evaluated files saved in the new GNDS (Generalised Nuclear Data Structure) nuclear data format. The processing code FUDGE (For Updating Data and Generating Evaluations) is at the front-end of this pipeline as it reads and process the evaluated data for use in downstream transport codes. FUDGE is Python based with C and C++ extensions for computationally intensive tasks. As is the case for the evaluated data, the processed output is also saved in the GNDS format and the GIDI+ API is provided as the interface between the processed data and the transport codes. GIDI+ is a C++ based suite of codes and it includes GIDI (General Interaction Data Interface), a library for reading and writing GNDS data, and MCGIDI which is the cross section lookup, and reaction and product distribution sampling interface between Monte Carlo transport codes and the GNDS data. GIDI provides methods for easy access to the multi-group processed GNDS data and this is demonstrated through its implementation in ARDRA, the LLNL deterministic transport code. The evaluation and sampling methods in MCGIDI are available as both CPU and GPU methods which facilitates the use of MCGIDI in both traditional CPU-based as well as the next generation mixed model computational architectures. This is demonstrated through the GIDI+ implementation in MERCURY, the LLNL Monte Carlo transport code. (authors)

22 GENERAL STUDIES OF NUCLEAR REACTORS↗

Collaborative RFID reader using code divisional multiple access (CDMA) and methods for same

The present disclosure provides collaborative radiofrequency identification (RFID) readers that employ code division multiple access (CDMA) encoding to simultaneously broadcast to and read responses from tags in an overlapping reading zone with improved data synchronization and read yield rates. In some embodiments, a harmonic backscattering scheme is used to enable the system to have a much higher signal-to-noise ratio (SNR) and sensitivity, while the reader CDMA protocol can be integrated with an initial TDMA polling process or alternative tag CDMA scheme.

Kan, Edwin C.↗

An improved genome of the model marine alga Ostreococcus tauri unfolds by assessing Illumina de novo assemblies

Background: Cost effective next generation sequencing technologies now enable the production of genomic datasets for many novel planktonic eukaryotes, representing an understudied reservoir of genetic diversity. O. tauri is the smallest free-living photosynthetic eukaryote known to date, a coccoid green alga that was first isolated in 1995 in a lagoon by the Mediterranean sea. Its simple features, ease of culture and the sequencing of its 13 Mb haploid nuclear genome have promoted this microalga as a new model organism for cell biology. Here, we investigated the quality of genome assemblies of Illumina GAIIx 75 bp paired-end reads from Ostreococcus tauri, thereby also improving the existing assembly and showing the genome to be stably maintained in culture. Results: The 3 assemblers used, ABySS, CLCBio and Velvet, produced 95% complete genomes in 1402 to 2080 scaffolds with a very low rate of misassembly. Reciprocally, these assemblies improved the original genome assembly by filling in 930 gaps. Combined with additional analysis of raw reads and PCR sequencing effort, 1194 gaps have been solved in total adding up to 460 kb of sequence. Mapping of RNAseq Illumina data on this updated genome led to a twofold reduction in the proportion of multi-exon protein coding genes, representing 19% of the total 7699 protein coding genes. The comparison of the DNA extracted in 2001 and 2009 revealed the fixation of 8 single nucleotide substitutions and 2 deletions during the approximately 6000 generations in the lab. The deletions either knocked out or truncated two predicted transmembrane proteins, including a glutamate-receptor like gene. Conclusion: High coverage (>80 fold) paired-end Illumina sequencing enables a high quality 95% complete genome assembly of a compact ~13 Mb haploid eukaryote. This genome sequence has remained stable for 6000 generations of lab culture.

59 BASIC BIOLOGICAL SCIENCES↗

Marine DNA methylation patterns are associated with microbial community composition and inform virus-host dynamics

Background: DNA methylation in prokaryotes is involved in many different cellular processes including cell cycle regulation and defense against viruses. To date, most prokaryotic methylation systems have been studied in culturable microorganisms, resulting in a limited understanding of DNA methylation from a microbial ecology perspective. Here, we analyze the distribution patterns of several microbial epigenetics marks in the ocean microbiome through genome-centric metagenomics across all domains of life. Results: We reconstructed 15,056 viral, 252 prokaryotic, 56 giant viral, and 6 eukaryotic metagenome-assembled genomes from northwest Pacific Ocean seawater samples using short- and long-read sequencing approaches. These metagenome-derived genomes mostly represented novel taxa, and recruited a majority of reads. Thanks to single-molecule real-time (SMRT) sequencing technology, base modification could also be detected for these genomes. This showed that DNA methylation can readily be detected across dominant oceanic bacterial, archaeal, and viral populations, and microbial epigenetic changes correlate with population differentiation. Furthermore, our genome-wide epigenetic analysis of Pelagibacter suggests that GANTC, a DNA methyltransferase target motif, is related to the cell cycle and is affected by environmental conditions. Yet, the presence of this motif also partitions the phylogeny of the Pelagibacter phages, possibly hinting at a competitive co-evolutionary history and multiple effects of a single methylation mark. Conclusions: Overall, this study elucidates that DNA methylation patterns are associated with ecological changes and virus-host dynamics in the ocean microbiome.

59 BASIC BIOLOGICAL SCIENCES↗