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At least 1,693 records · Page 94

Recovery of Spaceflight-induced Bone Loss: Bone Mineral Density after Long-Duration Missions as Fitted with an Exponential Function

The loss of bone mineral in NASA astronauts during spaceflight has been investigated throughout the more than 40 years of space travel. Consequently, it is a medical requirement at NASA Johnson Space Center (JSC) that changes in bone mass be monitored in crew members by measuring bone mineral density (BMD) with dual-energy x-ray absorptiometry (DXA) before and after flight on astronauts who serve on long-duration missions (4-6 months). We evaluated this repository of medical data to track whether there is recovery of bone mineral that was lost during spaceflight. Our analysis was supplemented by BMD data from cosmonauts ( by convention, a space traveler formally employed by the Russia Aviation and Space Agency or by the previous Soviet Union) who had also flown on long-duration missions. Data from a total of 45 individual crew members -- a small number of whom flew on more than one mission -- were used in this analysis. Changes in BMD (between 56 different sets of pre- and postflight measurements) were plotted as a function of time (days after landing). Plotted BMD changes were fitted to an exponential mathematical function that estimated: i) BMD change on landing day (day 0) and ii) the number of days after landing when 50% of the lost bone would be recovered ("50% recovery time") in the lumbar spine, trochanter, pelvis, femoral neck and calcaneus. In sum, averaged losses of bone mineral after long-duration spaceflight ranged between 2-9% across all sites with our recovery model predicting a 50% restoration of bone loss for all sites to be within 9 months.

Sibonga, J. D.↗

Feedback Controllability Components Analysis (FCCA) v1.0

FCCA is a linear dimensionality reduction method that find subspaces of high-dimensional time-series data that are most feedback controllable. The key innovation is to formulate an objective function that quantifies the joint cost of state reconstruction and state regulation that can be evaluated from purely observational data. To do this, it leverages the duality between controllability and observability. We provide analytic results demonstrating the validity of the cost function. We evaluated this method in both synthetic and real neural data (from multiple organisms and brain areas).

Kumar, Ankit↗

From Reads to Function Workshop - Milano 2026

The Bicocca Sampling Days (BSDs) model offers a reproducible “citizen science” framework integrating research, education, and public engagement through large-scale microbiome sampling, followed by a workshop of data analysis on select samples. We identified 9 bacterial and archaeal metagenome-assembled genomes from six soil samples across three separate sampling days in two approaches with indidivual sample and replicate co-assembly spanning three unique classes, providing genomic insights into microbial nutrient cycling in these systems.

59 BASIC BIOLOGICAL SCIENCES↗

On the Hilbert-Huang Transform Data Processing System Development

One of the main heritage tools used in scientific and engineering data spectrum analysis is the Fourier Integral Transform and its high performance digital equivalent - the Fast Fourier Transform (FFT). The Fourier view of nonlinear mechanics that had existed for a long time, and the associated FFT (fairly recent development), carry strong a-priori assumptions about the source data, such as linearity and of being stationary. Natural phenomena measurements are essentially nonlinear and nonstationary. A very recent development at the National Aeronautics and Space Administration (NASA) Goddard Space Flight Center (GSFC), known as the Hilbert-Huang Transform (HHT) proposes a novel approach to the solution for the nonlinear class of spectrum analysis problems. Using the Empirical Mode Decomposition (EMD) followed by the Hilbert Transform of the empirical decomposition data (HT), the HHT allows spectrum analysis of nonlinear and nonstationary data by using an engineering a-posteriori data processing, based on the EMD algorithm. This results in a non-constrained decomposition of a source real value data vector into a finite set of Intrinsic Mode Functions (IMF) that can be further analyzed for spectrum interpretation by the classical Hilbert Transform. This paper describes phase one of the development of a new engineering tool, the HHT Data Processing System (HHTDPS). The HHTDPS allows applying the "T to a data vector in a fashion similar to the heritage FFT. It is a generic, low cost, high performance personal computer (PC) based system that implements the HHT computational algorithms in a user friendly, file driven environment. This paper also presents a quantitative analysis for a complex waveform data sample, a summary of technology commercialization efforts and the lessons learned from this new technology development.

Kizhner, Semion↗

Inverse design of two-dimensional graphene/h-BN hybrids by a regressional and conditional GAN

Design of materials with desired properties is currently laborious and heavily relies on intuition of researchers through a trial-and-error process. To tackle this challenge, in this work we propose a novel regressional and conditional generative adversarial network (RCGAN) for inverse design of representative two-dimensional materials, the graphene and boron-nitride (BN) hybrids. RCGAN incorporates a supervised regressor network, thus overcoming the common technical barrier in the traditional unsupervised GANs, which cannot generate data when fed with continuous and quantitative labels. RCGAN can autonomously generate graphene/BN hybrids given any target bandgap values. These structures are distinguished from the ones used for training and exhibit high diversity for a given bandgap. Moreover, they exhibit high fidelity, yielding bandgaps within ~10% MAE F of the desired bandgaps as validated by density functional theory (DFT) calculations. Analysis by the principle component analysis (PCA) and modified locally linear embedding (MLLE) reveals that the generator has successfully generated structures following the statistical distribution of the real structures. It implies the possibility of the RCGAN in recognizing physical rules hidden in the high-dimensional data. The novel strategy for designing regressional GAN architecture together with the successful application to inverse design of materials would inspire further exploration in research fields beyond materials.

36 MATERIALS SCIENCE↗

INSPIRED: Inelastic neutron scattering prediction for instantaneous results and experimental design

Inelastic neutron scattering (INS) has unique advantages in probing how atoms vibrate and how the vibrations propagate and interact. Such dynamic information is crucial in understanding various material properties, from heat capacity, thermal conductivity, phase transitions, and chemical reactions to more exotic quantum behavior. The analysis and interpretation of the INS spectra often start from a model structure of the sample, followed by a series of calculations to obtain the simulated spectra to compare with experiments. The conventional way to perform such calculations usually requires significant time, computing resources, and specialized expertise. Here, we present a new program named INSPIRED (Inelastic Neutron Scattering Prediction for Instantaneous Results and Experimental Design), which enables users to perform rapid INS simulations in several different ways on their personal computers in just a few clicks, with the crystal structure as the only input file. Specifically, the users can choose a pre-trained symmetry-aware neural network (coupled with an autoencoder) to predict the phonon density of states (DOS), 1D S(E) and 2D S(|Q|,E) spectra for any given structure. One can also choose an existing density functional theory (DFT) calculation from a database (containing over 12,000 crystals), and quickly obtain the simulated INS spectra for single crystals and powders. It is also possible to use pre-trained universal machine learning force fields to relax a given crystal structure, calculate the phonon dispersion and DOS, and, subsequently, the INS spectra. All these functions are implemented with a PyQt graphic user interface. Finally, we expect these new tools will benefit broad user communities and significantly improve the efficiency of experiment design, execution, and data analysis for INS.

72 PHYSICS OF ELEMENTARY PARTICLES AND FIELDS↗

Accuracy of kinetic equilibrium reconstruction of NSTX and NSTX-U plasmas and its impact on the transport and stability analysis

An accurate magnetohydrodynamic (MHD) equilibrium reconstruction is an essential starting point for stability and transport plasma analysis. Herein this work describes an approach for obtaining kinetic equilibrium reconstructions using the OMFIT framework, which has been applied for the first time to spherical tokamak data from NSTX and NSTX-U. The EFIT equilibrium solver is integrated with experimental data analysis procedures and subsequent TRANSP transport simulations to enhance the accuracy of the reconstruction, in particular, at the edge region, by adding constraints on the total pressure and current density profiles, based on the transport code solution. The accuracy of the equilibrium reconstruction depends on the uncertainty and number of constraints, as well as the choice of basis functions to represent the pressure and current density profiles. Improved fidelity of the equilibrium reconstruction is demonstrated by reducing the variability of the magnetic axis and boundary locations from several centimeters, for reconstructions based on magnetic and experimental pressure constraints, to only several millimeters, for kinetic reconstructions based on transport code constraints, when different representations of basis functions were tested. The variability of the safety factor on axis was reduced ten times in the same sensitivity study. The accuracy of the equilibrium reconstruction and subsequent mapping of the experimental kinetic profile data have a significant impact on the trapped gyro Landau fluid and linear CGYRO turbulence simulations, which predict different spectra of unstable modes and turbulent fluxes for cases with different numbers of constraints in the equilibrium reconstruction. Conversely, the stability analysis performed using the GATO code shows plasmas that are stable to n = 1 MHD modes in both equilibria using magnetic and experimental pressure constraints as well as the transport code constrained equilibrium. However, a scan of parameters away from these conditions shows considerable deviation in the threshold of unstable modes between these reconstructions. Therefore, for reliable plasma analysis and use in turbulence and stability calculations, a high-fidelity equilibrium reconstruction with accurate kinetic constraints based on transport code solutions is necessary.

70 PLASMA PHYSICS AND FUSION TECHNOLOGY↗

Advances in image compression and automatic target recognition; Proceedings of the Meeting, Orlando, FL, Mar. 30, 31, 1989

Various papers on image compression and automatic target recognition are presented. Individual topics addressed include: target cluster detection in cluttered SAR imagery, model-based target recognition using laser radar imagery, Smart Sensor front-end processor for feature extraction of images, object attitude estimation and tracking from a single video sensor, symmetry detection in human vision, analysis of high resolution aerial images for object detection, obscured object recognition for an ATR application, neural networks for adaptive shape tracking, statistical mechanics and pattern recognition, detection of cylinders in aerial range images, moving object tracking using local windows, new transform method for image data compression, quad-tree product vector quantization of images, predictive trellis encoding of imagery, reduced generalized chain code for contour description, compact architecture for a real-time vision system, use of human visibility functions in segmentation coding, color texture analysis and synthesis using Gibbs random fields.

Tescher, Andrew G.↗

Simulation of the Charge Measurements for the SuperCDMS Soudan Experiment

Astronomical observations lead us to believe that dark matter constitutes the majority of the mass of the Universe, yet it has never been directly observed experimentally. The Super Cryogenic Dark Matter Search Experiment (SuperCDMS) aims to discover the particle nature of dark matter, by developing and using some of the most sensitive detectors ever built. The SuperCDMS detectors are capable of rejecting known particles to search for dark matter interactions, but the discrimination is a complicated analysis task. Previous analyses with SuperCDMS set world leading sensitivity limits to dark matter interactions, but the analysis techniques have not been based on simulations. Now we have developed an efficient simulations infrastructure that will help better understand the detectors, develop a better background model, and optimize the next generation dark matter searches. In this thesis we present the fully-functional simulations infrastructure to produce high quality samples a s well as results for the charge system readout simulations, and comparisons to expectations from data. We show that our simulations well-reproduce dominant features of data, bringing SuperCDMS closer to a robust simulation-based analysis method, much needed for the upcoming SuperCDMS dark matter searches.

72 PHYSICS OF ELEMENTARY PARTICLES AND FIELDS↗

The ultraviolet markings on Venus - An analysis of the Venera 9 data

The results of Venera 9 measurements of the emergent intensity from the cloud tops of Venus are surveyed. It is reported that these radiance distributions at 3500 A contain information on the vertical and horizontal structure of the clouds and show the effects of the small and large scale ultra violet markings. Attention is given to model calculations with a Mie phase function for 1.05 micron sulfuric acid aerosols which indicate that the clouds have a layered structure. It is stressed that large-scale horizontal inhomogeneities (in excess of 1000 km) must be considered to supplement any analysis based on a horizontally homogeneous model. It is shown that the shape of the observed radiance distributions is affected by the ultraviolet 'Y' feature and the equatorial band.

Lestrade, J. P.↗

Analysis of LDEF micrometeoroid/debris data and damage to composite materials

This report presented published LDEF micrometeoroid/debris impact data in a nomogram format useful for estimating the total number of hits that could be expected on a space structure as a function of time in orbit, angular location relative to ram, and exposed surface area. Correction factors accounting for different altitudes are given. These are normalized to the average LDEF altitude. Examples on how to use the nomograph are also included. In addition, impact data and damage areas observed on composite laminates (experiment AO 180) are discussed.

Tennyson, R. C.↗

Functional Meta-Analysis of the Proteomic Responses of Arabidopsis Seedlings to the Spaceflight Environment Reveals Multi-Dimensional Sources of Variability across Spaceflight Experiments

The human quest for sustainable habitation of extraterrestrial environments necessitates a robust understanding of life’s adaptability to the unique conditions of spaceflight. This study provides a comprehensive proteomic dissection of the Arabidopsis plant’s responses to the spaceflight environment through a meta-analysis of proteomics data from four separate spaceflight experiments conducted on the International Space Station (ISS) in different hardware configurations. Raw proteomics LC/MS spectra were analyzed for differential expression in MaxQuant and Perseus software. The analysis of dissimilarities among the datasets reveals the multidimensional nature of plant proteomic responses to spaceflight, impacted by variables such as spaceflight hardware, seedling age, lighting conditions, and proteomic quantification techniques. By contrasting datasets that varied in light exposure, we elucidated proteins involved in photomorphogenesis and skotomorphogenesis in plant spaceflight responses. Additionally, with data from an onboard 1 g control experiment, we isolated proteins that specifically respond to the microgravity environment and those that respond to other spaceflight conditions. This study identified proteins and associated metabolic pathways that are consistently impacted across the datasets. Notably, these shared proteins were associated with critical metabolic functions, including carbon metabolism, glycolysis, gluconeogenesis, and amino acid biosynthesis, underscoring their potential significance in Arabidopsis’ spaceflight adaptation mechanisms and informing strategies for successful space farming.

59 BASIC BIOLOGICAL SCIENCES↗

Effects of nitrogen enrichment on tree carbon allocation: A global synthesis

Aim: Increased atmospheric nitrogen deposition may have profound effects on tree carbon allocation dynamics. However, a comprehensive understanding of how nitro-gen (N) enrichment influences carbon (C) allocation across plant functional processes and tree organs in individual trees remains elusive. Location: Global forest ecosystems. Time period: 1990–2018. Major taxa studied: Trees. Methods: We compiled data from 75 N addition experiments and conducted a meta-analysis to evaluate the responses of C source (photosynthesis), sinks (growth and respiration) and storage (non-structural carbohydrate concentrations) in different tree organs (foliage, above-ground wood and roots) to N enrichment. Results: N enrichment significantly enhanced C supply via photosynthesis (+39.6%, n = 128). C allocation to growth (biomass increment/production) significantly in-creased in foliage (+15.9%, n = 68) and above-ground wood (+31.8%, n = 64; bole, branch, stem and/or twig) with increasing N availability, but not in roots, whereas allocation increased in roots via increasing fine root turnover rate (+22.6%, n = 11). N fertilization significantly increased C allocation to respiration in above-ground wood (+46.6%, n = 12) and roots (+5.5%, n = 57), but not in foliage. N addition decreased non-structural carbohydrate (NSC) concentrations in foliage (-5.4%, n = 16) and roots (-5.0%, n = 21), but increased NSC in above-ground wood (+6.1%, n = 22). In addition, N enrichment effects were strongly affected by moderator variables. Main conclusions: Our results demonstrate that N addition increased C allocation to growth and respiration more strongly than C allocation to NSC storage, and increased C allocation to above-ground parts more strongly than to below-ground parts. Our results are useful for better understanding the response of tree functional processes at organ level to N enrichment. The existing data also reveal that more long-term ex-perimental studies on mature trees in tropical and boreal forests are urgently needed to provide a basis for forecasting tree responses to N enrichment at the global scale.

Li, Weibin↗

Uncertainty Analysis of Inertial Model Attitude Sensor Calibration and Application with a Recommended New Calibration Method

Statistical tools, previously developed for nonlinear least-squares estimation of multivariate sensor calibration parameters and the associated calibration uncertainty analysis, have been applied to single- and multiple-axis inertial model attitude sensors used in wind tunnel testing to measure angle of attack and roll angle. The analysis provides confidence and prediction intervals of calibrated sensor measurement uncertainty as functions of applied input pitch and roll angles. A comparative performance study of various experimental designs for inertial sensor calibration is presented along with corroborating experimental data. The importance of replicated calibrations over extended time periods has been emphasized; replication provides independent estimates of calibration precision and bias uncertainties, statistical tests for calibration or modeling bias uncertainty, and statistical tests for sensor parameter drift over time. A set of recommendations for a new standardized model attitude sensor calibration method and usage procedures is included. The statistical information provided by these procedures is necessary for the uncertainty analysis of aerospace test results now required by users of industrial wind tunnel test facilities.

Tripp, John S.↗

NNLO constraints on proton PDFs from the SeaQuest and STAR experiments and other developments in the CTEQ-TEA global analysis

We review progress in the global QCD analysis by the CTEQ-TEA group since the publication of CT18 parton distribution functions (PDFs) in the proton. Specifically, we discuss comparisons of CT18 NNLO predictions with the LHC 13 TeV measurements as well as with the FNAL SeaQuest and BNL STAR data on lepton pair production. The specialized CT18X PDFs approximating saturation effects are compared with the CT18sx PDFs obtained using NLL/NLO small-$x$ resummation. Short summaries are presented for the special CT18 parton distributions with fitted charm and with lattice QCD inputs. A recent comparative analysis of the impact of deuteron nuclear effects on the parton distributions by the CTEQ-JLab and CTEQ-TEA groups is summarized.

Guzzi, Marco↗

NNLO constraints on proton PDFs from the SeaQuest and STAR experiments and other developments in the CTEQ-TEA global analysis

We review progress in the global QCD analysis by the CTEQ-TEA group since the publication of CT18 parton distribution functions (PDFs) in the proton. Specifically, we discuss comparisons of CT18 NNLO predictions with the LHC 13 TeV measurements as well as with the FNAL SeaQuest and BNL STAR data on lepton pair production. The specialized CT18X PDFs approximating saturation effects are compared with the CT18sx PDFs obtained using NLL/NLO small-$x$ resummation. Short summaries are presented for the special CT18 parton distributions with fitted charm and with lattice QCD inputs. A recent comparative analysis of the impact of deuteron nuclear effects on the parton distributions by the CTEQ-JLab and CTEQ-TEA groups is summarized.

72 PHYSICS OF ELEMENTARY PARTICLES AND FIELDS↗

Chemoproteogenomic stratification of the missense variant cysteinome

Abstract Cancer genomes are rife with genetic variants; one key outcome of this variation is widespread gain-of-cysteine mutations. These acquired cysteines can be both driver mutations and sites targeted by precision therapies. However, despite their ubiquity, nearly all acquired cysteines remain unidentified via chemoproteomics; identification is a critical step to enable functional analysis, including assessment of potential druggability and susceptibility to oxidation. Here, we pair cysteine chemoproteomics—a technique that enables proteome-wide pinpointing of functional, redox sensitive, and potentially druggable residues—with genomics to reveal the hidden landscape of cysteine genetic variation. Our chemoproteogenomics platform integrates chemoproteomic, whole exome, and RNA-seq data, with a customized two-stage false discovery rate (FDR) error controlled proteomic search, which is further enhanced with a user-friendly FragPipe interface. Chemoproteogenomics analysis reveals that cysteine acquisition is a ubiquitous feature of both healthy and cancer genomes that is further elevated in the context of decreased DNA repair. Reference cysteines proximal to missense variants are also found to be pervasive, supporting heretofore untapped opportunities for variant-specific chemical probe development campaigns. As chemoproteogenomics is further distinguished by sample-matched combinatorial variant databases and is compatible with redox proteomics and small molecule screening, we expect widespread utility in guiding proteoform-specific biology and therapeutic discovery.

Desai, Heta (ORCID:0000000343621707)↗