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DOE OSTI · 3374872

From Reads to Function Workshop - Milano 2026

Ghisleni, Giulia [Department of Biotechnology and Biosciences, University of Milano-Bicocca, 20126, Milan, Italy]·Dow, Ellen Dow [Environmental Genomics and Systems Biology Division, E.O. Lawrence Berkeley National Laboratory, Berkeley, CA, USA]·Iovino, Teresa [Department of Biotechnology and Biosciences, University of Milano-Bicocca, 20126, Milan, Italy]·Colman-Vega, Pamela Jael [Catalan Institute for Water Research (ICRA-CERCA), Girona 17003, Spain]·Dicesare, Alessia [Department of Biotechnology and Biosciences, University of Milano-Bicocca, 20126, Milano, Italy; Department of Material Science and Nanotechnology, University of Milano-Bicocca, 20125, Milano, Italy]·Guanella, Emanuele [Department of Biotechnology and Biosciences, University of Milano-Bicocca, 20126, Milano, Italy]·Bacchi, Yodit Maria [Department of Biotechnology and Biosciences, University of Milano-Bicocca,20126, Milan, Italy]·Colombo, Althea [Department of Biotechnology and Biosciences, University of Milano-Bicocca,20126, Milan, Italy]·Leccese, Maristella [Department of Biotechnology and Biosciences, University of Milano-Bicocca,20126, Milan, Italy]·Marzucchi, Matilde [Dipartimento di Scienze della Terra e del Mare, Università di Palermo, 90128, Palermo, Italia; Dipartimento di Scienze della Vita, Università di Siena, 53100, Siena, Italia]·Gorla, Margherita Emma [Department of Biotechnology and Biosciences, University of Milano-Bicocca, 20126, Milan, Italy]·Caracciolo, Alessandra [Department of Biotechnology and Biosciences, University of Milano-Bicocca, 20126, Milan, Italy]·Sala, Alessio [Department of Biotechnology and Biosciences, University of Milano-Bicocca, 20126, Milan, Italy]·Makarycheva, Polina [School of Biosciences and Veterinary Medicine, University of Camerino, Camerino, Italy]·Rubrica, Sharon Cristal [Department of Biotechnology and Biosciences, University of Milano-Bicocca, 20126, Milan, Italy]·Ferrier, Andrea [Department of Agricultural, Forest and Food Sciences, University of Turin, 10124 Turin, Italy]·Armanni, Alice [Department of Biotechnology and Biosciences, University of Milano-Bicocca, 20126, Milan, Italy]·Fumagalli, Sara [Department of Biotechnology and Biosciences, University of Milano-Bicocca, 20126, Milan, Italy]·Wood-Charlson, Elisha [Environmental Genomics and Systems Biology Division, E.O. Lawrence Berkeley National Laboratory, Berkeley, CA, USA]·Bruno, Antonia [Department of Biotechnology and Biosciences, University of Milano-Bicocca, 20126, Milan, Italy]
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Abstract

The Bicocca Sampling Days (BSDs) model offers a reproducible “citizen science” framework integrating research, education, and public engagement through large-scale microbiome sampling, followed by a workshop of data analysis on select samples. We identified 9 bacterial and archaeal metagenome-assembled genomes from six soil samples across three separate sampling days in two approaches with indidivual sample and replicate co-assembly spanning three unique classes, providing genomic insights into microbial nutrient cycling in these systems.

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Ghisleni, Giulia [Department of Biotechnology and Biosciences, University of Milano-Bicocca, 20126, Milan, Italy], Dow, Ellen Dow [Environmental Genomics and Systems Biology Division, E.O. Lawrence Berkeley National Laboratory, Berkeley, CA, USA], Iovino, Teresa [Department of Biotechnology and Biosciences, University of Milano-Bicocca, 20126, Milan, Italy], Colman-Vega, Pamela Jael [Catalan Institute for Water Research (ICRA-CERCA), Girona 17003, Spain], Dicesare, Alessia [Department of Biotechnology and Biosciences, University of Milano-Bicocca, 20126, Milano, Italy; Department of Material Science and Nanotechnology, University of Milano-Bicocca, 20125, Milano, Italy], Guanella, Emanuele [Department of Biotechnology and Biosciences, University of Milano-Bicocca, 20126, Milano, Italy], Bacchi, Yodit Maria [Department of Biotechnology and Biosciences, University of Milano-Bicocca,20126, Milan, Italy], Colombo, Althea [Department of Biotechnology and Biosciences, University of Milano-Bicocca,20126, Milan, Italy], Leccese, Maristella [Department of Biotechnology and Biosciences, University of Milano-Bicocca,20126, Milan, Italy], Marzucchi, Matilde [Dipartimento di Scienze della Terra e del Mare, Università di Palermo, 90128, Palermo, Italia; Dipartimento di Scienze della Vita, Università di Siena, 53100, Siena, Italia], Gorla, Margherita Emma [Department of Biotechnology and Biosciences, University of Milano-Bicocca, 20126, Milan, Italy], Caracciolo, Alessandra [Department of Biotechnology and Biosciences, University of Milano-Bicocca, 20126, Milan, Italy], Sala, Alessio [Department of Biotechnology and Biosciences, University of Milano-Bicocca, 20126, Milan, Italy], Makarycheva, Polina [School of Biosciences and Veterinary Medicine, University of Camerino, Camerino, Italy], Rubrica, Sharon Cristal [Department of Biotechnology and Biosciences, University of Milano-Bicocca, 20126, Milan, Italy], Ferrier, Andrea [Department of Agricultural, Forest and Food Sciences, University of Turin, 10124 Turin, Italy], Armanni, Alice [Department of Biotechnology and Biosciences, University of Milano-Bicocca, 20126, Milan, Italy], Fumagalli, Sara [Department of Biotechnology and Biosciences, University of Milano-Bicocca, 20126, Milan, Italy], Wood-Charlson, Elisha [Environmental Genomics and Systems Biology Division, E.O. Lawrence Berkeley National Laboratory, Berkeley, CA, USA], Bruno, Antonia [Department of Biotechnology and Biosciences, University of Milano-Bicocca, 20126, Milan, Italy]. 2026-07-15. From Reads to Function Workshop - Milano 2026. https://doi.org/10.25982/243825.51%2F3374872

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