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At least 1,441 records · Page 80
All sourcesNASA NTRSDOE OSTI
DOE OSTI2022

Genome-wide fetalization of enhancer architecture in heart disease

Heart disease is associated with re-expression of key transcription factors normally active only during prenatal development of the heart. However, the impact of this reactivation on the regulatory landscape in heart disease is unclear. Here, we use RNA-seq and ChIP-seq targeting a histone modification associated with active transcriptional enhancers to generate genome-wide enhancer maps from left ventricle tissue from up to 26 healthy controls, 18 individuals with idiopathic dilated cardiomyopathy (DCM), and five fetal hearts. Healthy individuals have a highly reproducible epigenomic landscape, consisting of more than 33,000 predicted heart enhancers. In contrast, we observe reproducible disease-associated changes in activity at 6,850 predicted heart enhancers. Combined analysis of adult and fetal samples reveals that the heart disease epigenome and transcriptome both acquire fetal-like characteristics, with 3,400 individual enhancers sharing fetal regulatory properties. We also provide a comprehensive data resource (http://heart.lbl.gov) for the mechanistic exploration of DCM etiology.

60 APPLIED LIFE SCIENCES↗
DOE OSTI2022

Spatial Study 2021: Sample-Based Surface Water Chemistry and Organic Matter Characterization across Watersheds in the Yakima River Basin, Washington, USA (v3)

This dataset supports a broader study examining the drivers of spatial variability in sediment respiration rates in the Yakima River Basin. The dataset provides geochemistry and organic matter characterization data generated from samples collected during the same two-week period at 47 sites within multiple rivers throughout the Yakima River Basin in Washington, USA. Related sensor data are published at https://data.ess-dive.lbl.gov/datasets/doi:10.15485/1892054. This data package was originally published September 2022. It was updated May 2023 (modified files) and November 2024 (new and modified files). See the change history section in the readme for more details. This dataset is comprised of one main data folder containing (1) file-level metadata; (2) data dictionary; (3) field metadata; (4) dissolved inorganic carbon (DIC), dissolved organic carbon (DOC; reported as non-purgeable organic carbon; NPOC), total nitrogen (TN), total suspended solids (TSS), ions, and benzene polycarboxylic acid (BPCA) concentration and stable isotope data; (5) averaged values from water chemistry data; (6) surface water sampling protocol; (7) sensor protocol (8) readme; (9) methods codes; (10) international generic-sample number (IGSN) mapping file; and (11) folder of high resolution characterization of organic matter via 12 Tesla Fourier transform ion cyclotron resonance mass spectrometry (FTICR-MS) through the Environmental Molecular Sciences Laboratory (EMSL; https://www.pnnl.gov/environmental-molecular-sciences-laboratory). This folder contains two subfolders, one containing the .xml data files and the other containing instructions for using Formultitude (https://github.com/PNNL-Comp-Mass-Spec/Formultitude) and an R script to process the data based on the user's specific needs. All files are .csv, .pdf, .R, .ref, or .xml. We thank the United States Forest Service, Washington Department of Natural Resources, Washington Department of Fish and Wildlife, Washington State Parks, Confederated Tribes and Bands of the Yakama Nation, and Cowiche Canyon Conservancy for access to field locations where these samples were collected. We also thank the Yakama Nation Tribal Council and Yakama Nation Fisheries for working with us to facilitate sample collection and optimization of data usage according to their values and worldview.

54 ENVIRONMENTAL SCIENCES↗
DOE OSTI2025

Postdoctoral insights on mentoring excellence: a framework for best practices at Sandia National labs

The Sandia National Laboratories Strategic Plan FY24-FY27, updated for FY25, outlines Sandia’s two Big Labs-wide Goals, Accelerate Innovation and Lead in Modern Engineering. The goal of Accelerate Innovation is that “by FY27, Sandia will be a leader in scientific, engineering and operational innovation and an employer of choice for highly innovative and creative talent.” Sandia’s postdocs are leaders in innovation, well-versed in emerging techniques and cutting-edge methods, and capable of acting as a highly agile technical force across domains at the lab. As a federally funded research and development center (FFRDC), Sandia National Laboratories attracts top doctoral talent by offering a unique opportunity for postdoctoral researchers to develop at the crossroads of government, academia, and industry, working in multi-disciplinary teams and performing cutting-edge, mission-specific research that responds to immediate needs of national interest. However, this creates unique opportunities and demands of both postdoctoral appointees and the Sandia staff who act as their mentors, making mentorship key to attract talent. Since 2007 the Sandia Postdoctoral Development (SPD) Board, originally Postdoc To Professional (PD2P), a networking group at Sandia composed of a voluntary board of current postdocs and two staff liaisons, has advocated for postdoctoral development within Sandia National Labs. In this white paper, SPD board members and the Sandia Postdoctoral Development Office, organized in 2019, have come together to develop a comprehensive overview of the postdoctoral mentoring landscape at Sandia National Labs as we currently know it. By scouring various forms of data from efforts since 2018, we’ve compiled a community-derived perspective on what makes postdoctoral mentorship at Sandia unique. First, we analyze working sessions held between mentors and mentees to develop a comprehensive map of who is involved in postdoctoral mentorship at the lab and how the responsibilities are divided amongst mentors and mentees. We then combine multiple forms of data, including exit surveys, annual surveys, and community workshops, to identify the specific challenges that mentors and mentees encounter at the national lab. Finally, we use text mining and sentiment analysis to analyze mentoring award data to develop an idea of what postdocs are self-identifying as excellent mentorship within the lab. It is our goal that this white paper act as an ongoing resource to the postdoc and postdoc mentoring communities and provide a firm foundation for further conversations on the future of postdoctoral mentorship at Sandia National Labs.

99 GENERAL AND MISCELLANEOUS↗
NASA NTRS1973

Monitoring California's forage resource using ERTS-1 and supporting aircraft data

NASA's Earth Resource Technology Satellite (ERTS-1) launched July 23, 1972, offers for the first time the unique capabilities for regional monitoring of forage plant conditions. The repetitive coverage every 18 days, the synoptic view and the real-time recovery of the imagery for immediate analysis, combine to make the ERTS satellite a valuable tool for improving the evaluation of our rangeland resources. Studies presently underway at the University of California, Berkeley (sponsored jointly by NASA and the Bureau of Land Management), seek to determine if imagery obtained from high altitude aircraft and spacecraft (ERTS) can provide: (1) a means for monitoring the growth and development of annual and perennial range plants in California, and for determining the time and the rate of initial plant growth (germination) and terminal plant growth (maturation and senescence); (2) a means for determining or predicting the relative amount of forage that is produced; and (3) a means for mapping rangeland areas having different forage producing capabilities.

Carneggie, D. M.↗
NASA NTRS1982

Use of LANDSAT 2 data technique to estimate silverleaf sunflower infestation

The feasibility of the technique using the Earth Resources Technology Satellite (LANDSAT-2) multispectral scanner (MSS) was tested; to distinguish silverleaf sunflowers (Helianthus argophyllus Torr. and Gray) from other plant species and to estimate the hectarage percent of its infestation. Sunflowers gave high mean digital counts in all four LANDSAT MSS bands that were manifested as a pinkish image response on the LANDSAT color composite imagery. Photo- and LANDSAT-estimated hectare percentages for silverleaf sunflower within a 23,467 ha study area were 9.1 and 9.5%, respectively. The geographic occurrence of sunflower areas on the line-printer recognition map was in good agreement with their known aerial photographic locations.

Richardson, A. J.↗
NASA NTRS2012

PHOBOS Exploration using Two Small Solar Electric Propulsion Spacecraft

Primitive bodies are exciting targets for exploration as they provide clues to the early Solar system conditions and dynamical evolution. The two moons of Mars are particularly interesting because of their proximity to an astrobiological target. However, after four decades of Mars exploration, their origin and nature remain enigmatic. In addition, when considering the long-term objectives of the flexible path for the potential human exploration to Mars, Phobos and Deimos present exciting intermediate opportunities without the complication and expense of landing and ascending from the surface. As interest in these targets for the next frontier of human exploration grows, characterization missions designed specifically to examine surface properties, landing environments, and surface mapping prior to human exploration are becoming increasingly important. A precursor mission concept of this sort has been developed using two identical spacecraft designed from low cost, flight proven and certified off-the-shelf component and utilizing Solar Electric Propulsion (SEP) to orbit both targets as secondary payloads launched aboard any NASA or GTO launch. This precursor mission has the potential to address both precursor measurements that are strategic knowledge gaps and decadal science, including soil physical properties at the global and local (human) scale and the search for in situ resources.

Phobos↗
DOE OSTI2024

Fast and deep phosphoproteome analysis with the Orbitrap Astral mass spectrometer

Owing to its roles in cellular signal transduction, protein phosphorylation plays critical roles in myriad cell processes. That said, detecting and quantifying protein phosphorylation has remained a challenge. We describe the use of a novel mass spectrometer (Orbitrap Astral) coupled with data-independent acquisition (DIA) to achieve rapid and deep analysis of human and mouse phosphoproteomes. With this method, we map approximately 30,000 unique human phosphorylation sites within a half-hour of data collection. The technology is benchmarked to other state-of-the-art MS platforms using both synthetic peptide standards and with EGF-stimulated HeLa cells. We apply this approach to generate a phosphoproteome multi-tissue atlas of the mouse. Altogether, we detect 81,120 unique phosphorylation sites within 12 hours of measurement. With this unique dataset, we examine the sequence, structural, and kinase specificity context of protein phosphorylation. Finally, we highlight the discovery potential of this resource with multiple examples of phosphorylation events relevant to mitochondrial and brain biology.

37 INORGANIC, ORGANIC, PHYSICAL, AND ANALYTICAL CH↗
DOE OSTI2025

Adaptive Graph Learning with Transformer for Multi-Reservoir Inflow Prediction

Reservoir inflow prediction is crucial for water resource management, yet existing approaches mainly focus on single-reservoir models that ignore spatial dependencies among interconnected reservoirs. We introduce AdaTrip as an adaptive, time-varying graph learning framework for multi-reservoir inflow forecasting. AdaTrip constructs dynamic graphs where reservoirs are nodes with directed edges reflecting hydrological connections, employing attention mechanisms to automatically identify crucial spatial and temporal dependencies. Evaluation on thirty reservoirs in the Upper Colorado River Basin demonstrates superiority over existing baselines, with improved performance for reservoirs with limited records through parameter sharing. Additionally, AdaTrip provides interpretable attention maps at edge and time-step levels, offering insights into hydrological controls to support operational decision-making. Our code is available at https://github.com/humphreyhuu/AdaTrip.

Hu, Pengfei [ORNL] (ORCID:0009000367130950)↗
DOE OSTI2023

A Unified Metric for Fast Frequency Response in Low-Inertia Power Systems

Future power systems with more inverter-based resources (IBRs), will be vulnerable to frequency decline contingencies. Fast frequency response (FFR) provided by IBRs is a good candidate to arrest frequency excursions. Diverse types of FFR have been proposed, and some have been deployed in our power systems. Without a unified quantification of FFR, it is hard for the grid operators to compare and fully leverage the FFR capabilities of IBRs. This work introduces a potential unified metric that quantifies two key characteristics of FFR and describes its application to three prevailing FFR types. We then use metric-to-frequency mapping to validate the accuracy of the metric in predicting the impact of a given FFR on the trajectory of a frequency event. The results show that the proposed metric is simple yet accurately captures the ability of diverse forms of FFR to improve system frequency dynamics.

effective inertia↗
DOE OSTI2026

Cis-regulatory evolution shapes facial diversity in birds and mammals

Birds and mammals exhibit extraordinary facial diversity, reflecting adaptations to distinct ecological niches and feeding strategies. While core face-building developmental programs are conserved and orchestrated by interactions between ectodermal organizers and the underlying mesenchyme, mechanisms driving facial shape variation remain poorly understood. Here, we integrate single-cell transcriptomic and chromatin accessibility profiling of mouse and chicken developing face to construct a comparative regulatory map. Although both ectodermal and mesenchymal populations display distinct regulatory features in each species, the mesenchyme exhibits markedly greater divergence, pointing to its central role in shaping facial morphology. We further reveal unexpected molecular complexity in the main face-shaping organizer, including a mouse-specific Shh/Wnt5a expression domain. At key morphogen loci (Bmp4, Fgf8, and Wnt5a), conserved and lineage-specific enhancers exhibit spatially restricted activity patterns that mirror divergent signaling domains. These findings demonstrate how cis-regulatory evolution modulates conserved developmental programs to generate morphological novelty, providing a valuable resource for studying vertebrate facial evolution.

Kyomen, Stella [Max Planck Institute for Evolution↗
DOE OSTI2024

Avian Activity Classification Using Recurrent Networks to Fuse Videos with Metadata on Imbalanced Datasets

Activity classification plays a crucial role in various real-life scenarios involving both humans and animals. There is an increasing need for precise activity classification focused on avian-solar interactions, as the usage of solar energy facilities, such as photovoltaic array power stations, has been observed to impact bird species richness, behavior, and activity. However, there has been no work to develop an automated system to monitor and classify these avian-solar interactions. All current methods rely on human observers, which is time and human resources costly and subject to errors related to searcher efficiency. With the recent success of Deep Learning models in activity classification problems, this paper develops a recurrent neural network-based model to automatically classify six avian activities around solar energy facilities. Our proposed model integrates critical feature engineering metadata with video frame data, enabling improved learning and more accurate activity classification. Furthermore, we address the challenge of data imbalance during training and demonstrate the efficacy of our model in detecting and classifying different activities within video tracks. Additionally, we analyze the saliency/backpropagation map of the trained proposed model and validate its decision-making rationale.

Avian activity classification; bidirectional LSTM;↗
DOE OSTI2020

Perspectives on ENCODE

The Encyclopedia of DNA Elements (ENCODE) Project launched in 2003 with the long-term goal of developing a comprehensive map of functional elements in the human genome. These included genes, biochemical regions associated with gene regulation (for example, transcription factor binding sites, open chromatin, and histone marks) and transcript isoforms. The marks serve as sites for candidate cis-regulatory elements (cCREs) that may serve functional roles in regulating gene expression. The project has been extended to model organisms, particularly the mouse. Finally, in the third phase of ENCODE, nearly a million and more than 300,000 cCRE annotations have been generated for human and mouse, respectively, and these have provided a valuable resource for the scientific community.

59 BASIC BIOLOGICAL SCIENCES↗
DOE OSTI2025

Examining future changes in coastal low-level jet properties offshore California through dynamical downscaling

The coastal low-level jet, or coastal low-level jet (CLLJ), is a synoptically-forced meteorological feature frequently present offshore the western United States (U.S.). Characterized by a wind speed maximum that resides at the top of the marine boundary layer, the CLLJ is largely controlled by the location and strength of the North Pacific High (NPH) as well as the coastal geometry. Considering the rich wind resource available in this offshore region, the Bureau of Ocean Energy Management identified wind energy lease areas offshore California and supported the deployment of two U.S. Department of Energy wind lidar buoys near Morro Bay and Humboldt. Despite our relatively good understanding of the fundamental mechanisms responsible for large-scale CLLJ properties offshore the western U.S., future changes in CLLJ characteristics are less clear. To address this research challenge, and ultimately to better inform future wind turbine deployments, we use simulations driven by three global climate models (GCMs). We apply self-organizing maps to the model outputs for a historical and two future climate periods to show the range of NPH regimes that support CLLJ conditions during the warm seasons, as well as the subtle contribution from land-falling cyclones approaching the mainland during the cold seasons. Compared to the historical period, the three GCM-driven simulations agree that CLLJ conditions will become more (less) prevalent from central California northward (southward). They agree less with respect to future changes in maximum CLLJ wind speeds and CLLJ heights. However, after considering model biases present during the historical period, wind speeds between the models are actually more similar during the 2070–2095 period than during the historical period. The potential combination of more frequent CLLJ conditions characterized by relatively consistent wind speeds occurring at lower heights across northern California suggests that the Humboldt lease area may be ideal for a long-term wind turbine deployment.

54 ENVIRONMENTAL SCIENCES↗
DOE OSTI2020

The Cost of Floating Offshore Wind Energy in California Between 2019 and 2032

California’s energy planning is centered around meeting the emissions reduction and renewable energy requirements of Senate Bill 350 by 2030. However, state power system planning is expected to eventually address California’s requirement to achieve 100% of total retail electricity sales from renewable energy and zero-carbon resources by 2045, as mandated by Senate Bill 100. To comply with these directives, California needs to investigate the further development of energy efficiency, storage, and a diverse range of renewable energy, zero-carbon emission, and transmission resources, including offshore wind. Wind resources off the coast of California have the potential to generate a significant portion of the state’s electric energy as it moves toward a zero-carbon economy and can help diversify its energy mix. Floating offshore wind technology, which is suitable for the deep waters along the California coast, is currently in a precommercial phase, with approximately 84 megawatts (MW) installed worldwide at the end of 2019. Globally there are over 7,000 MW in planning and permitting phases of development, with the first commercial-scale projects expected to be operational in 2024. This study provides site-specific cost and performance data for floating offshore wind to inform California’s long-term energy planning. The identification of new resources to meet California’s policy goals at least cost is part of the Integrated Resource Planning (IRP) process, which is coordinated by the California Public Utilities Commission (CPUC). In 2019–2020 IRP modeling, offshore wind was included for the first time as a candidate resource in some sensitivity cases (CPUC 2019). The data and information presented in this report can be used to update offshore wind inputs in future IRP cycles. The authors conducted a geospatial cost analysis over portions of the offshore wind resource area of California. The analyzed spatial domain includes sites with a mean wind speed of at least 7 meters per second and water depths between 40 meters (m) and 1,300 m. Costs and energy production vary across this analysis domain. We calculated these parameters on a grid layout with over 750 sites, with each site representing a 1,000-MW commercial offshore wind power plant. Levelized cost of energy (LCOE) was calculated at each site over the analysis domain. The resulting variation in LCOE across the analysis domain is illustrated through heat maps in this report. Five study areas were selected within the analysis domain where more detailed cost analysis was conducted and cost parameters, such as annual energy production, capital cost expenditures (CapEx), operational cost expenditures (OpEx), and net capacity factors are reported. These five study areas include Morro Bay, Diablo Canyon, Humboldt, Cape Mendocino and Del Norte.

17 WIND ENERGY↗
NASA NTRS1992

TOPLEX: Teleoperated Lunar Explorer. Instruments and Operational Concepts for an Unmanned Lunar Rover

A Teleoperated Lunar Explorer, or TOPLEX, consisting of a lunar lander payload in which a small, instrument-carrying lunar surface rover is robotically landed and teleoperated from Earth to perform extended lunar geoscience and resource evaluation traverses is proposed. The rover vehicle would mass about 100 kg and carry approximately 100 kg of analytic instruments. Four instruments are envisioned: (1) a Laser-Induced Breakdown Spectrometer (LIBS) for geochemical analysis at ranges up to 100 m, capable of operating in three different modes; (2) a combined x-ray fluorescence and x-ray diffraction (XRF/XRD) instrument for elemental and mineralogic analysis of acquired samples; (3) a mass spectrometer system for stepwise heating analysis of gases released from acquired samples; and (4) a geophysical instrument package for subsurface mapping of structures such as lava tubes.

Blacic, James D.↗
NASA NTRS2022

Haiti Agriculture: Utilizing NASA Earth Observations to Evaluate the Success of Reforestation Practices in Haiti

Haiti is one of the world’s most deforested and environmentally degraded countries. Over the past 30 years, the Haiti Reforestation Partnership (HRP) has provided resources, education, and expertise to support reforestation work in Haiti. The HRP has planted over 15 million trees through their partnership with Comprehensive Development Program (CODEP). However, they have yet to conduct a comprehensive analysis of forest stand survival. The NASA DEVELOP team partnered with the HRP to aid their future silvicultural decisions using satellite imagery. Through the creation of the Monitoring of Vegetation Presence (MVP) tool in Google Earth Engine, the team produced a time series showing trends in enhanced vegetation index (EVI) from 1984 to 2021, as well as a habitat suitability map using a general model for all tree species. These provided the partner with visuals to communicate their reforestation efforts and guidance on where to apply their future efforts. The team utilized Landsat 5 Thematic Mapper (TM), Landsat 7 Enhanced Thematic Mapper Plus (ETM+), Landsat 8 Operational Land Imager (OLI), Landsat 9 OLI-2 and Sentinel-2 Multispectral Instrument (MSI) vegetation indices as indicators of stand success over time. The team also incorporated WorldClim bioclimatic variables such as precipitation and temperature, Centre National de L’Information Geo-Spatiale (CNIGS) Airborne Lidar elevation, and ancillary datasets areas suitable for future reforestation efforts. Overall, the time series showed that the demonstration forest increased in EVI at a greater rate than the surrounding area and the habitat model suggested there are 49,000 hectares of suitable habitat for planting using slope, aspect and temperature as predictor variables.

Kelli Roberts↗
DOE OSTI2022

CLARIFYING THE NEXUS BETWEEN LIFE CYCLE ASSESSMENT AND CIRCULARITY INDICATORS: A SETAC/ACLCA INTEREST GROUP

Purpose Improving the circularity of resources is important to the sustainability of consumer goods. Current research has indicated that circularity practices and circular economy (CE) methods do not always reduce environmental impacts. The aim of this research is to investigate the adoption of the life cycle assessment (LCA) methodology to improve the environmental impacts of circularity practices. Methods As part of the Society for Environmental Toxicology And Chemistry (SETAC) forum, an interest group (IG) on Circularity and LCA was formed in partnership with the American Center for Life Cycle Assessment (ACLCA) to tackle methodological and technical issues related to circularity in LCA. The IG’s research approach is summarized in four key steps: defining goals and objectives, literature review and gap analysis, ideation, and experimentation. The twelve active persons within this IG meet monthly and have been divided into four sub-working groups (sub-WGs) so that complementary tasks can be completed concurrently in an effective manner. Each sub-WG meets monthly and reports back to the main group for collaboration and brainstorming to meet the research objectives. Results and discussion First, the sub-WG #1, focusing on the “pool of circularity and LCA-based indicators”, analyzed the complementarity between two of the most used circularity indicators and LCA. Second, the sub-WG #2, working on the “evaluation of CE loops performance through LCA”, built a mind map of pain points that reflect the challenges that the LCA practitioners face when combining LCA with CE approaches. Third, the sub-WG #3, dealing with the “trade-offs between circularity and sustainability”, highlighted key alignments and/or conflicts between circularity and sustainability performance depending on the scope, product, industry, or system of analysis. Fourth, the sub-WG #4, focusing on “business and industrial cases”, plans to leverage the knowledge base developed within this IG to develop use cases documenting the benefits and challenges associated with CE-related loops modeling in LCA. Conclusions The first findings of this SETAC/ACLCA IG provide a state-of-the-art overview of the synergists of LCA methodology and the CE measurement frameworks reported in the literature. To move forward and capitalize on the first findings, one valuable point will be to discuss and provide concrete solutions to the pain points that emerged when considering circularity in LCA. Eventually, the knowledge base and resources created within this IG ultimately aim to support the proper application of LCA for practitioners in CE contexts, and could provide relevant inputs for the ISO Technical Committee ISO/TC 323 working on the upcoming standard for the measurement of CE performance.

Life cycle assessment, circular economy, circulari↗
NASA NTRS1973

Applications of multispectral imagery to water resources development planning in the lower Mekong Basin (Khmer Republic, Laos, Thailand and Viet-Nam)

The use of ERTS imagery for water resources planning in the lower Mekong Basin relates to three major issues: (1) it complements data from areas, which have been inaccessible in the past because of security; this concerns mainly forest cover of the watersheds, and geological features, (2) it refines ground surveys; this concerns mainly land forms, and soils of existing and planned irrigation perimeters, and (3) it provides new information, which would be almost or entirely impossible to detect with ground surveys or conventional photography; this concerns the mechanism of flooding and drainage of the delta; siltation of the Great Lake and mapping of acidity, possibly also of salinity, in the lower delta; sedimentation and fisheries in the Mekong Delta estuarine areas.

Vankiere, W. J.↗