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DOE OSTI2021

Machine Learning Self-Diffusion Prediction for Lennard-Jones Fluids in Pores

Predicting the diffusion coefficient of fluids under nanoconfinement is important for many applications including the extraction of shale gas from kerogen and product turnover in porous catalysts. Due to the large number of important variables, including pore shape and size, fluid temperature and density, and the fluid–wall interaction strength, simulating diffusion coefficients using molecular dynamics (MD) in a systematic study could prove to be prohibitively expensive. Here, we use machine learning models trained on a subset of MD data to predict the self-diffusion coefficients of Lennard-Jones fluids in pores. Our MD data set contains 2280 simulations of ideal slit pore, cylindrical pore, and hexagonal pore geometries. We use the forward feature selection method to determine the most useful features (i.e., descriptors) for developing an artificial neutral network (ANN) model with an emphasis on easily acquired features. Our model shows good predictive ability with a coefficient of determination (i.e., R 2 ) of ~0.99 and a mean squared error of ~2.9 × 10 –5 . Finally, we propose an alteration to our feature set that will allow the ANN model to be applied to nonideal pore geometries.

37 INORGANIC, ORGANIC, PHYSICAL, AND ANALYTICAL CH↗

DOE OSTI2024

Trends and Drivers of Terrestrial Sources and Sinks of Carbon Dioxide: An Overview of the TRENDY Project

The terrestrial biosphere plays a major role in the global carbon cycle, and there is a recognized need for regularly updated estimates of land-atmosphere exchange at regional and global scales. An international ensemble of Dynamic Global Vegetation Models (DGVMs), known as the “Trends and drivers of the regional scale terrestrial sources and sinks of carbon dioxide” (TRENDY) project, quantifies land biophysical exchange processes and biogeochemistry cycles in support of the annual Global Carbon Budget assessments and the REgional Carbon Cycle Assessment and Processes, phase 2 project. DGVMs use a common protocol and set of driving data sets. A set of factorial simulations allows attribution of spatio-temporal changes in land surface processes to three primary global change drivers: changes in atmospheric CO 2 , climate change and variability, and Land Use and Land Cover Changes (LULCC). Here, we describe the TRENDY project, benchmark DGVM performance using remote-sensing and other observational data, and present results for the contemporary period. Simulation results show a large global carbon sink in natural vegetation over 2012–2021, attributed to the CO 2 fertilization effect (3.8 ± 0.8 PgC/yr) and climate (–0.58 ± 0.54 PgC/yr). Forests and semi-arid ecosystems contribute approximately equally to the mean and trend in the natural land sink, and semi-arid ecosystems continue to dominate interannual variability. The natural sink is offset by net emissions from LULCC (–1.6 ± 0.5 PgC/yr), with a net land sink of 1.7 ± 0.6 PgC/yr. Despite the largest gross fluxes being in the tropics, the largest net land-atmosphere exchange is simulated in the extratropical regions.

58 GEOSCIENCES↗

DOE OSTI2021

Modeling and simulation of transitional Rayleigh–Taylor flow with partially averaged Navier–Stokes equations

In this work, the partially averaged Navier–Stokes (PANS) equations are used to predict the variable-density Rayleigh–Taylor (RT) flow at Atwood number 0.5 and maximum Reynolds number 500. This is a prototypical problem of material mixing, featuring laminar, transitional, and turbulent flow, instabilities and coherent structures, density fluctuations, and production of turbulence kinetic energy by both shear and buoyancy mechanisms. These features pose numerous challenges to modeling and simulation, making the RT flow ideal to develop the validation space of the recently proposed PANS Besnard–Harlow–Rauenzahn-linear eddy viscosity model closure. The numerical simulations are conducted at different levels of physical resolution and test three approaches to set the parameters $f_\phi$ defining the range of physically resolved scales. The computations demonstrate the efficiency (accuracy vs cost) of the PANS model predicting the spatiotemporal development of the RT flow. Results comparable to large-eddy simulations and direct numerical simulations are obtained at significantly lower physical resolution without the limitations of the Reynolds-averaged Navier–Stokes equations in these transitional flows. The data also illustrate the importance of appropriate selection of the physical resolution and the resolved fraction of each dependent quantity $\phi$ of the turbulent closure, $f_\phi$. These two aspects determine the ability of the model to resolve the flow phenomena not amenable to modeling by the closure and, as such, the computations’ fidelity.

Navier Stokes equations↗

DOE OSTI2025

From Existing and New Nuclear and Astrophysical Constraints to Stringent Limits on the Equation of State of Neutron-Rich Dense Matter

Through continuous progress in nuclear theory and experiment and an increasing number of neutron-star (NS) observations, a multitude of information about the equation of state (EOS) for matter at extreme densities is available. To constrain the EOS across its entire density range, this information needs to be combined consistently. However, the impact and model dependency of individual observations vary. Given their growing number, assessing the various methods is crucial to compare the respective effects on the EOS and discover potential biases. For this purpose, we present a broad compendium of different constraints and apply them individually to a large set of EOS candidates within a Bayesian framework. Specifically, we explore different ways of how chiral effective field theory and perturbative quantum chromodynamics can be used to place a likelihood on EOS candidates. We also investigate the impact of nuclear experimental constraints, as well as different radio and x-ray observations of NS masses and radii. This is augmented by reanalyses of the existing data from binary neutron star coalescences, in particular of GW170817, with improved models for the tidal waveform and kilonova light curves, which we also utilize to construct a tight upper limit of 2.39 M ⊙ on the TOV mass based on GW170817’s remnant. Our diverse set of constraints is eventually combined to obtain stringent limits on NS properties. We organize the combination in a way to distinguish between constraints where the systematic uncertainties are deemed small and those that rely on less conservative assumptions. For the former, we find the radius of the canonical 1.4 M ⊙ neutron star to be R 1.4 = 12.2 6 − 0.91 + 0.80 km and the TOV mass at M TOV = 2.2 5 − 0.22 + 0.42 M ⊙ (95% credibility). Including all the presented constraints yields R 1.4 = 12.2 0 − 0.48 + 0.50 km and M TOV = 2.3 0 − 0.20 + 0.07 M ⊙ . When comparing these limits to individual data points, we find that the quoted radius of HESS J1731-347 displays noticeable tension with other constraints. Constraining microphysical properties of the EOS proves more challenging. For instance, the symmetry energy slope is restricted to L sym = 48 − 25 + 21 MeV , where this constraint is mainly dominated by our reanalysis of the PREX-II and CREX experiment. Published by the American Physical Society 2025

73 NUCLEAR PHYSICS AND RADIATION PHYSICS↗

DOE OSTI2025

Reweighting simulated events using machine-learning techniques in the CMS experiment

Data analyses in particle physics rely on an accurate simulation of particle collisions and a detailed simulation of detector effects to extract physics knowledge from the recorded data. Event generators together with a GEANT -based simulation of the detectors are used to produce large samples of simulated events for analysis by the LHC experiments. These simulations come at a high computational cost, where the detector simulation and reconstruction algorithms have the largest CPU demands. This article describes how machine-learning (ML) techniques are used to reweight simulated samples obtained with a given set of parameters to samples with different parameters or samples obtained from entirely different simulation programs. The ML reweighting method avoids the need for simulating the detector response multiple times by incorporating the relevant information in a single sample through event weights. Results are presented for reweighting to model variations and higher-order calculations in simulated top quark pair production at the LHC. This ML-based reweighting is an important element of the future computing model of the CMS experiment and will facilitate precision measurements at the High-Luminosity LHC.

46 INSTRUMENTATION RELATED TO NUCLEAR SCIENCE AND ↗

DOE OSTI2020

Determination of Solar System R-Process Abundances using ENDF/B-VIII.0 and TENDL-2015 libraries

Recent multi-messenger detection of the binary neutron star merger (GW170817) energized the astrophysical community and encouraged further research for determination of nuclear physics observables. Comprehensive studies of atomic nuclei in the cosmos provide an opportunity for investigating these astrophysical phenomena and acquiring complementary information on stellar nucleosynthesis processes that can be verified using the latest nuclear data. Evaluated Nuclear Data File (ENDF) libraries contain complete collections of reaction cross sections over the energy range relevant to astrophysics, fission yields and decay data. These data collections have been used worldwide in nuclear science, industry and national security applications. There is great interest in exploring the ENDF/B-VIII.0 and TALYS Evaluated Nuclear Data Library (TENDL-2015) for nuclear astrophysics purposes and comparing findings with the Karlsruhe Astrophysical Database of Nucleosynthesis in Stars (KADoNiS). The Maxwellian-averaged cross sections (MACS) and astrophysical reaction rates have been calculated using the ENDF/B-VIII.0 and TENDL-2015 evaluated data sets. The calculated cross sections were combined with the solar system abundances and fitted using the classical model of stellar nucleosynthesis. Astrophysical rapid- and slow-neutron capture, r- and s-process, respectively, abundances were obtained from present data and compared with available values. Further analysis of MACS reveals potential evaluated libraries data deficiencies and a strong need for new measurements. The current results demonstrate a large nuclear astrophysics potential of evaluated libraries and mutually beneficial relations between nuclear industry and research e orts.

73 NUCLEAR PHYSICS AND RADIATION PHYSICS↗

DOE OSTI2023

Modular droplet injector for sample conservation providing new structural insight for the conformational heterogeneity in the disease-associated NQO1 enzyme

Droplet injection strategies are a promising tool to reduce the large amount of sample consumed in serial femtosecond crystallography (SFX) measurements at X-ray free electron lasers (XFELs) with continuous injection approaches. Here, we demonstrate a new modular microfluidic droplet injector (MDI) design that was successfully applied to deliver microcrystals of the human NAD(P)H:quinone oxidoreductase 1 (NQO1) and phycocyanin. We investigated droplet generation conditions through electrical stimulation for both protein samples and implemented hardware and software components for optimized crystal injection at the Macromolecular Femtosecond Crystallography (MFX) instrument at the Stanford Linac Coherent Light Source (LCLS). Under optimized droplet injection conditions, we demonstrate that up to 4-fold sample consumption savings can be achieved with the droplet injector. In addition, we collected a full data set with droplet injection for NQO1 protein crystals with a resolution up to 2.7 Å, leading to the first room-temperature structure of NQO1 at an XFEL. NQO1 is a flavoenzyme associated with cancer, Alzheimer's and Parkinson's disease, making it an attractive target for drug discovery. Further, our results reveal for the first time that residues Tyr128 and Phe232, which play key roles in the function of the protein, show an unexpected conformational heterogeneity at room temperature within the crystals. These results suggest that different substates exist in the conformational ensemble of NQO1 with functional and mechanistic implications for the enzyme's negative cooperativity through a conformational selection mechanism. Our study thus demonstrates that microfluidic droplet injection constitutes a robust sample-conserving injection method for SFX studies on protein crystals that are difficult to obtain in amounts necessary for continuous injection, including the large sample quantities required for time-resolved mix-and-inject studies.

59 BASIC BIOLOGICAL SCIENCES↗

DOE OSTI2025

Diagenesis is key to unlocking outcrop fracture data suitable for quantitative extrapolation to geothermal targets

Exceptionally large, well-exposed sandstone outcrops in New York provide insights into folds, deformation bands, and fractures that could influence permeability, heat exchange, and stimulation outcomes of geothermal reservoir targets. Cambrian Potsdam Sandstone with <5% porosity contains decimeter-scale open, angular-limbed monoclines <0.5 km apart with associated low-porosity mm-wide cataclastic deformation bands. Crossing and abutting relationships among sub-vertical opening-mode fractures show four chronological Sets A–D, striking NNW, NE, NW, and ENE, respectively. Fracture lengths and heights range from millimeters to tens of meters. Sets A and C macro-fractures, and possibly B and D, contain quartz deposits. All sets have abundant associated quartz cemented microfractures that also record set orientations and crosscutting relations. Quartz cement deposits—evidence of diagenesis—are the key to identifying attributes of outcrop fractures suitable for extrapolation to geothermal targets in sandstones because they show which fractures formed in the subsurface. Set A fluid inclusion homogenization temperatures (120°C–129°C) are compatible with fracture at >3 km depth. Fractures are stiff and those ≥0.05 mm (Set C) and ≥0.1 mm (Set A) are open and potentially conducive to flow. Sets A and D are abundant in outcrops with close fracture spacing—0.18 m and 0.68 m, respectively—and define a rectangular connectivity network dominated by crossing and abutting X and Y nodes. Set A aperture distributions follow a power law with slope –0.8 up to 0.15 mm; other sets have lognormal distributions. Set A and D microfractures are weakly clustered, while macro-fractures commonly have 1D anticlustered (regular or periodic) arrangements at shorter length scales (<0.2 m). Sub-horizontal fractures are barren and may have formed near the surface. Fracture heights, lengths, and spatial arrangements show good trace connectivity but low open connectivity. For geothermal applications, outcrop results predict low initial well-test permeabilities owing to quartz disconnecting open fractures, but stimulation of closely spaced microfractures and partly open macro-fractures could yield high surface area for heat exchange. Quantitative extrapolation of key fracture attributes like abundance, orientation, spatial arrangement, length, and open fracture connectivity is possible from outcrops to fractured reservoirs if differing thermal histories and diagenesis are accounted for.

02 PETROLEUM↗

DOE OSTI2023

Search for leptoquarks decaying into the bτ final state in pp collisions at $\sqrt{\textrm{s}}$ = 13 TeV with the ATLAS detector

A search for leptoquarks decaying into the $bτ$ final state is performed using Run 2 proton-proton collision data from the Large Hadron Collider, corresponding to an integrated luminosity of 139 fb —1 at $\sqrt{\textrm{s}}$ = 13 TeV recorded by the ATLAS detector. The benchmark models considered in this search are vector leptoquarks with electric charge of 2/3e and scalar leptoquarks with an electric charge of 4/3e. No significant excess above the Standard Model prediction is observed, and 95% confidence level upper limits are set on the cross-section times branching fraction of leptoquarks decaying into bτ. For the vector leptoquark production two models are considered: the Yang-Mills and Minimal coupling models. In the Yang-Mills (Minimal coupling) scenario, vector leptoquarks with a mass below 1.58 (1.35) TeV are excluded for a gauge coupling of 1.0 and below 2.05 (1.99) TeV for a gauge coupling of 2.5. In the case of scalar leptoquarks, masses below 1.28 (1.53) TeV are excluded for a Yukawa coupling of 1.0 (2.5). Finally, an interpretation of the results with minimal model dependence is performed for each of the signal region categories, and limits on the visible cross-section for beyond the Standard Model processes are provided.

72 PHYSICS OF ELEMENTARY PARTICLES AND FIELDS↗

DOE OSTI2021

Charged Particle Tracking via Edge-Classifying Interaction Networks

Recent work has demonstrated that geometric deep learning methods such as graph neural networks (GNNs) are well suited to address a variety of reconstruction problems in high-energy particle physics. In particular, particle tracking data are naturally represented as a graph by identifying silicon tracker hits as nodes and particle trajectories as edges, given a set of hypothesized edges, edge-classifying GNNs identify those corresponding to real particle trajectories. In this work, we adapt the physics-motivated interaction network (IN) GNN toward the problem of particle tracking in pileup conditions similar to those expected at the high-luminosity Large Hadron Collider. Assuming idealized hit filtering at various particle momenta thresholds, we demonstrate the IN’s excellent edge-classification accuracy and tracking efficiency through a suite of measurements at each stage of GNN-based tracking: graph construction, edge classification, and track building. The proposed IN architecture is substantially smaller than previously studied GNN tracking architectures; this is particularly promising as a reduction in size is critical for enabling GNN-based tracking in constrained computing environments. Furthermore, the IN may be represented as either a set of explicit matrix operations or a message passing GNN. Efforts are underway to accelerate each representation via heterogeneous computing resources towards both high-level and low-latency triggering applications.

accelerator physics↗

DOE OSTI2025

Gradient-based optimization of complex nanoparticle heterostructures enabled by deep learning on heterogeneous graphs

Applications of deep learning (DL) to design nanomaterials are hampered by a lack of suitable data representations and training data. Here, in this study, we report efforts to overcome these limitations and leverage DL to optimize the nonlinear optical properties of core–shell upconverting nanoparticles (UCNPs). UCNPs, which have applications in fields such as biosensing, super-resolution microscopy and three-dimensional printing, can emit visible and ultraviolet light from near-infrared excitations. We report a large-scale dataset of UCNP emission spectra based on accurate but expensive kinetic Monte Carlo simulations (N > 6,000) and use these data to train a heterogeneous graph neural network using a physically motivated representation of UCNP nanostructure. Applying gradient-based optimization on the trained graph neural network, we identify structures with 6.5× higher predicted emission under 800-nm illumination than any UCNP in our training set. Our work reveals design principles for UCNP heterostructures and presents a roadmap for DL-based inverse design of nanomaterials.

Sivonxay, Eric [Lawrence Berkeley National Laborat↗

DOE OSTI2023

Dynamics in Star-forming Cores (DiSCo): project overview and the first look towards the B1 and NGC 1333 regions in Perseus

The internal velocity structure within dense gaseous cores plays a crucial role in providing the initial conditions for star formation in molecular clouds. However, the kinematic properties of dense gas at core scales (~0.01–0.1 pc) has not been extensively characterized because of instrument limitations until the unique capabilities of GBT-Argus became available. The ongoing GBT-Argus Large Program, Dynamics in Star-forming Cores (DiSCo) thus aims to investigate the origin and distribution of angular momentum of star-forming cores. DiSCo will survey all starless cores and Class 0 protostellar cores in the Perseus molecular complex down to ~0.01 pc scales with <0.05 km s –1 velocity resolution using the dense gas tracer N 2 H + . Here, we present the first data sets from DiSCo towards the B1 and NGC 1333 regions in Perseus. Our results suggest that a dense core’s internal velocity structure has little correlation with other core-scale properties, indicating these gas motions may be originated externally from cloud-scale turbulence. These first data sets also reaffirm the ability of GBT-Argus for studying dense core velocity structure and provided an empirical basis for future studies that address the angular momentum problem with a statistically broad sample.

79 ASTRONOMY AND ASTROPHYSICS↗

DOE OSTI2025

Applying Machine Learning and Bayesian Inference to Identify and Locate Moving Anthropogenic Sources Using Distributed Acoustic Sensing Data

Distributed acoustic sensing (DAS) systems, which use existing telecommunication fibers, offer high‐resolution capabilities ideal for recording anthropogenic sources. However, the complexity of urban environments and the large amount of data recorded by DAS require automated methods to efficiently detect and categorize anthropogenic sources. Here, we evaluate how well three machine learning models (k‐nearest neighbor [k‐NN], convolutional neural networks, and recurrent‐convolutional neural networks) can identify various anthropogenic sources recorded by DAS. Our findings reveal that both k‐NN and neural network methods perform well in high signal‐to‐noise ratio (SNR) settings. However, their accuracy decreases at SNRs <4. We also use Kalman filtering, a form of Bayesian inference, on backprojected locations of these sources to recover locations that generally fall within standard smartphone Global Positioning System errors. By combining machine learning and Kalman filter results, we calculate a multidimensional model of moving anthropogenic sources. These results demonstrate the potential of DAS data in urban seismology for accurately identifying and locating such sources. Depending on the research objectives, these sources can be further studied or filtered out to improve the quality of seismic data for earthquake studies. Such methods provide a valuable tool for urban seismology and seismic hazard analysis.

Luckie, Thomas William [Sandia National Laboratori↗

DOE OSTI2024

MLOps for Beam Controls

Machine learning operations (MLOps) is the standardization and streamlining of the ML development lifecycle to address the challenges associated with large-scale machine learning applications. The full MLOps pipeline consists of open-source tools: DataHub, MinIO and MLflow. It is being used for dataset management and model development to handle changing data dependencies, varying business needs, reproducibility, and diverse teams working with differing tools and skills. To demonstrate the completion of an MLOps pipeline for particle accelerator operations, we are deploying a simple script that computes settings for the Booster’s gradient magnet power supply. Once the demonstration is complete, we will develop and deploy ML-based optimization algorithms to improve Booster’s overall efficiency. This MLOps pipeline opens the gate to systematically develop and deploy ML applications for accelerator controls and diagnostics.

43 PARTICLE ACCELERATORS↗

DOE OSTI2025

AI in Astrophysics: Tackling Domain Shift, Model Robustness and Uncertainty

Artificial Intelligence (AI) is revolutionizing physics research from probing the large-scale structure of the Universe to modeling subatomic interactions and fundamental forces. Yet, a major challenge persists: AI models trained on simulations or old experiment / astronomical survey often perform poorly when applied to new data exposing issues of dataset (domain) shift, model robustness, and uncertainty in predictions. This talk will introduce common challenges in applying AI across domains and present solutions based on domain adaptation a set of techniques designed to improve model generalization under domain shift. We will cover foundational ideas, practical strategies, and current research frontiers in this area. Through examples in astrophysics, we'll explore how domain adaptation can help bridge the gap between synthetic and real-world data, improve trust in model outputs, and advance scientific discovery.

Ciprijanvoic, Aleksandra [Fermilab] (ORCID:0000000↗

DOE OSTI2024

Structure of Low-spin States in $^{45}$Sc Studied via Coulomb Excitation

The electromagnetic structure of 45 Sc at low excitation energy was investigated via low-energy Coulomb excitation at the Heavy Ion Laboratory (HIL) of the University of Warsaw and at the Inter-University Accelerator Centre (IUAC) in New Delhi. A set of reduced E2, E3, and M1 matrix elements was extracted from the collected data using the GOSIA code. The reduced transition probability B(E2; 11/2 – → 7/2 – ) has been determined, allowing us to deduce the lifetime of the 11/2 – state at 1237 keV. In addition, the upper limit on the reduced transition probability B(E3; 7/2 – → 5/2 + ) has been determined for the first time. Finally, new large-scale shellmodel and beyond-mean-field calculations were performed to interpret the structure of this nucleus.

73 NUCLEAR PHYSICS AND RADIATION PHYSICS↗

DOE OSTI2023

Accurate Prediction of Algal Biomass Lipid, Protein, and Carbohydrate Composition with Machine Learning Regression Modelling of Near-IR Spectra

During large scale algal biomass cultivation, it is difficult to reliably control relative composition to target levels. Rapid determination of chemical composition is feasible by using near infrared (NIR) spectral data. We sought to build and improve on reliable high-throughput screening prediction method based on partial least squares regression (PLSR) by the application of artificial neural networks (ANN) and associated optimization strategies. The algal biomass sample set was designed and created in an iterative process of culturing in physiologically diverse conditions at the GAI field site, followed by compositional analyses at NREL. The workflow allowed us to identify gaps in compositional space for informing the subsequent cultivation and sampling efforts and generated a high quality set of 210 unique samples with chemical analysis results, spectral scanning data, and cultivation metadata. We observed a significant improvement in the performance of carbohydrate content predictions using an optimized ANN model compared to PLSR, with > 16% reduction in mean absolute percent error (MAPE) when tested on the same set of reserved data. The optimized ANN models for FAME and protein prediction performed exceptionally well with 5.99% and 5.09% MAPE, respectively. Application of these methods to detection and quantification of minor biomass constituents that are relevant to certain product streams has shown positive preliminary results, opening the possibility for extensions to the outputs of this powerful data type. All models are accompanied by prediction uncertainties and unsupervised spectral outlier detection to alert an operator to unreliable spectral data. These tools can be deployed for rapid determination of algal culture status, and cultivation and biomass quality improvement.

algal biofuels↗

DOE OSTI2024

MLOps for Beam Controls

43 PARTICLE ACCELERATORS↗