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At least 937 records · Page 52

Campylobacter jejuni resistance to human milk involves the acyl carrier protein AcpP

Campylobacter jejuni is a common foodborne pathogen worldwide that is associated with high rates of morbidity and mortality among infants in low- to middle-income countries (LMICs). Human milk provides infants with an important source of nutrients and contains antimicrobial components for protection against infection. However, recent studies, including our own, have found significantly higher levels of Campylobacter in diarrheal stool samples collected from breastfed infants compared to non-breastfed infants in LMICs. We hypothesized that C. jejuni has unique strategies to resist the antimicrobial properties of human milk. Transcriptional profiling found human milk exposure induces genes associated with ribosomal function, iron acquisition, and amino acid utilization in C. jejuni strains 81–176 and 11168. However, unidentified proteinaceous components of human milk prevent bacterial growth. Evolving both C. jejuni isolates to survive in human milk resulted in mutations in genes encoding the acyl carrier protein (AcpP) and the major outer membrane porin (PorA). Introduction of the PorA/AcpP amino acid changes into the parental backgrounds followed by electron microscopy showed distinct membrane architectures, and the AcpP changes not only significantly improved growth in human milk, but also yielded cells surrounded with outer membrane vesicles. Analyses of the phospholipid and lipooligosaccharide (LOS) compositions suggest an imbalance in acyl chain distributions. For strain 11168, these changes protect both evolved and 11168ΔacpP G33R strains from bacteriophage infection and polymyxin killing. Taken together, this study provides insights into how C. jejuni may evolve to resist the bactericidal activity of human milk and flourish in the hostile environment of the gastrointestinal tract.

60 APPLIED LIFE SCIENCES↗

Anatomy of a Turtle Confiscation: What to Expect When You're Not Expecting and Recommendations for Improving Outcomes

Turtles are being subjected to unprecedented collection for the illegal wildlife trade, but only a portion of the trade is detected. When confiscations do happen, wildlife agencies must decide what to do with those animals—euthanize them, place them in permanent captivity, or release them back into the wild. Here, we present a case study of a confiscation of .200 eastern box turtles (Terrapene carolina carolina) and our efforts to repatriate them back to the wild. Twentyfive percent of turtles died in captivity, and at least another 33% died during the soft-release phase. Approximately half of the confiscated turtles survived until they were released from their soft-release pen 9 months post-confiscation. For each phase, from the time turtles were seized until released, we describe our objectives, the challenges we encountered, and our recommendations for improving future turtle confiscations. Given the extended stressful conditions that confiscated turtles often experience before being seized, it is important to recalibrate our expectations regarding future confiscation outcomes.

60 APPLIED LIFE SCIENCES↗

Persistent Current Simulation for CCT Testing Magnet Used in EIC

The Electron-Ion Collider (EIC), a powerful new facility to be built in the United States at the U.S. Department of Energy's Brookhaven National Laboratory in collaboration with Thomas Jefferson National Accelerator Facility, will explore the most fundamental building blocks of nearly all visible matter. Here, there are many different types of superconducting magnets near the interaction region (IR) of EIC. Due to space constraints and special lattice requirements, Tapered CCT (canted-cosine theta) magnets have been used for EIC. At beam injection, the magnetic field is only ~5.5% of the maximum operating field. Considerable field errors will be generated from persistent current in superconducting strands even using very fine filament for those superconductors. A tapered CCT demonstrator magnet has been built and tested successfully at BNL since July 2020 to evaluate the key technologies for future tapered CCT magnets. In October 2023, BNL team also measured the persistent current in this demonstrator magnet. To validate the persistent current simulation methods for CCT magnets in EIC, this paper used a full 3D Opera Model and measured magnetization data from superconducting strand for the simulation. Simulation results showed reasonable agreement with recent measurement results.

73 NUCLEAR PHYSICS AND RADIATION PHYSICS↗

The Dark Energy Survey supernova program: a reanalysis of cosmology results and evidence for evolving dark energy with an updated Type Ia supernova calibration

We present improved cosmological constraints from a re-analysis of the Dark Energy Survey (DES) 5-year sample of Type Ia supernovae (DES-SN5YR). This re-analysis includes an improved photometric cross-calibration, recent white dwarf observations to cross-calibrate between DES and low-redshift surveys, retraining the salt3 light-curve model and fixing a numerical approximation in the host-galaxy colour law. Our fully recalibrated sample, which we call DES-Dovekie, comprises ~1600 likely Type Ia SNe from DES and ~200 low-redshift SNe from other surveys. With DES-Dovekie, we obtain Ω m = 0.330 ± 0.015 in flat Lambda-cold dark matter (⁠ΛCDM) which changes Ω m by –0.022 compared to DES-SN5YR. Combining DES-Dovekie with cosmic microwave background data from Planck, Atacama Cosmology Telescope, and South Pole Telescope and the DESI DR2 measurements in a flat CDM cosmology, we find ω 0 = –0.803 ± 0.054 and ω a = –0.72 ± 0.21⁠. Our results hold a significance of 3.2σ, reduced from 4.2σ for DES-SN5YR, to reject the null hypothesis that the data are compatible with the cosmological constant. This significance is equivalent to a Bayesian model preference odds of approximately 5:1 in favour of the flat ω 0 ω a CDM model. Using generally accepted thresholds for model preference, our updated data exhibits only a weak preference for evolving dark energy.

dark energy↗

Quench Simulation and Validation for EIC Direct Wind Magnets

The Electron-Ion Collider (EIC), a new facility to be built in the United States at the U.S. Department of Energy’s Brookhaven National Laboratory in collaboration with Thomas Jefferson National Accelerator Facility-will be the only new particle collider in the U.S. for the next 10∼20 years. The EIC project will investigate the origin of mass and building blocks of the Universe. It will accelerate and collide beams of electrons with protons and nuclei. Unlike any collider that has ever existed before, both EIC’s particle beams will be polarized, meaning their spins will be aligned in a controlled way to allow for precision measurements. Different types of new superconducting magnets will be required near the interaction region (IR) of EIC. A 6-around-1 NbTi cable will be used for some of those new superconducting magnets. Given the relatively smaller conductors used for those direct wind magnets, the overall engineering current density will be 2–3 times higher in comparison to traditional collared superconducting magnets in other accelerator magnets. This is technically challenging and potentially represents high risks for quench protection. Here, in this paper we use different tools and methods for quench simulation for several EIC direct wind magnets. We also present results of a sensitivity study, exploring different material properties and Jc curves. This paper also discusses and validates the quench simulation results with measurement results from a small-scale serpentine magnet tested at BNL in October 2024.

73 NUCLEAR PHYSICS AND RADIATION PHYSICS↗

Integrating science for water security governance

Hydrological extremes are intensifying globally, increasing the complexity of decisions required to ensure water security. Advances in hydrological science, modeling, and data systems have expanded the technical frontier of water research, yet uptake of scientific insights in policy and management decisions remains limited. This persistent science–policy gap is not primarily a failure of knowledge generation or robustness, but an institutional challenge shaped by how scientific and governance systems are organized, coordinated, and connected to support the effective use of scientific knowledge. These challenges are particularly pronounced in multi-level and transboundary water governance, where decisions span jurisdictions and require coordination across institutional and political boundaries. We synthesize research at the science–policy interface and evidence from water security initiatives to show how institutional arrangements, scientific tool development, and research practices enable or constrain the sustained use of scientific knowledge in water-security governance processes. Building on these insights, we develop ‘shared decision infrastructure’ as a framing to describe how scientific knowledge is embedded within the institutional, relational, and procedural arrangements that connect science to decision-making processes over time. We translate this framing into a practical intervention roadmap centered on institutional design, tool translation, sustained co-production, and outcome-oriented evaluation to support the integration of science into ongoing governance processes. By positioning science as shared decision infrastructure, the roadmap clarifies how researchers can design scientific efforts that support more coordinated, accountable, and adaptive water security decisions amid deepening uncertainty.

M whitney, Kristen [NASA Goddard Space Flight Cent↗

Characterizing the vertical structure of forests in the Brazilian Amazon

Little is known about the structure of tropical forests despite its critical role in the provisioning of ecosystem services. Here we assess the vertical structure of forests in the Brazilian Amazon with a large-scale airborne LiDAR dataset. We show that fire has greater impact in the lowest forest strata, differently from selective logging and windthrow. We also find that secondary forests quickly recover or even exceed reference areas at the 1-10 m height stratum but that full recovery for the 20-30 m height stratum has not been achieved even after 35 years. Our modeling results suggest that proximity to roads, elevation, precipitation, soil pH, and proportion of sand in the soil are the most important predictors of forest structure. Finally, we identify 5 forest structural types (FSTs) and use them to visualize the spatial distribution of forest structure. This study provides important information for forest monitoring, management, and conservation.

Biogeography↗

Assessment of Knowledge, Attitudes, and Practices Toward Ticks and Tickborne Disease among Healthcare Professionals Working in Schools in New York and Maryland

Healthcare Professionals Working in Schools (HPWS) are responsible for providing health services to students and play a role in providing education to prevent illnesses, including tickborne diseases (TBD). Providing TBD education to children has been shown to increase prevention behaviors and knowledge of TBD symptoms, but little is known regarding the current state of TBD awareness among HPWS. In spring 2019 we conducted a cross-sectional knowledge, attitudes, and practices (KAP) survey of HPWS in two states with a high incidence of Lyme disease (LD) to inform design of TBD prevention programs. The survey queried general knowledge of TBDs, school practices regarding TBDs, and availability of TBD resources. Overall, higher confidence, experience, risk perception, prior training on TBD, and more years employed as a HPWS were independently associated with knowledge of LD transmission, symptoms, and correct tick removal practices. State and local health departments should consider prioritizing engagement with HPWS to provide educational opportunities about tickborne diseases.

Nursing↗

Videos, photos, and AI-derived grain size data associated with “High-throughput AI Video Surveys Enable Reproducible Multiscale Sediment Size Mapping, with Implications for Hydrobiogeochemical Parameterization”

NOTE: The manuscript associated with this data package is currently in review. The data may be revised based on reviewer feedback. Upon manuscript acceptance, this data package will be updated with the final dataset and additional metadata. This data package is associated with the manuscript “High-throughput AI Video Surveys Enable Reproducible Multiscale Sediment Size Mapping, with Implications for Hydrobiogeochemical Parameterization” under review. This data package includes five data types: 1) raw photos and videos from drone survey and walking smartphone surveys; 2) images derived from raw videos; 3) manual labeling of reference scales; 4) metadata for all images and photo resolution derived from artificial intelligence (AI) models or manual labels, 5) grain size data obtained from AI models for all photos, 6) metadata and grain size data after quality control, 7) summaries of sample efficiency for all data, and 8) computational fluid dynamics (CFD) data used to support hydro-biogeochemical (HBGC) parameter estimation. Such data is used to 1) demonstrate significant improvements in accuracy, efficiency, and quality control for grain size data collection with the help of AI models, 2) study the spatial heterogeneity of grain size and observation reproducibility based on tens of thousands of data points generated by the AI models, and 3) evaluate the impacts of grain size heterogeneity on key HBGC parameters across sediment-to-reach and hourly-to-yearly scales. In particular, the data package contains 116 folders and 179696 files. The files include 41 videos in .mov format, 64047 photos in .jpg format, 13541 video-derived photos in .png format, 12747 segmentation mask data in .tif format, 12747 segmentation data in .json format, 24771 .csv files that with metadata and grain size for each individual photo as well as water depth and velocity data from CFD and observation, 51791 .txt files of raw AI predicted labels, and 11 flight record data in .srt format. The summary for all metadata and grain size statistics information is included in “Scales_V3_NG.csv” and “Statistics_V3_NG.csv”. The summary for data that pass data quality control (QC) level 0-2 is included in “QCStatistics_V3_NG.csv”. The QC level 0 represents photos whose photo resolution is positive, excluding photos that miss reference scale. The QC level 1 means reference scale circularity uncertainty is less than 5% for smartphone images while representing photo resolution is larger than 0.44 mm/pixel for drone images. The QC level 2 means excluding photos whose grain number is less than 100, a minimum number of grains recommended by classic literature. The summary for each video’s name, length, frame rates, survey area, grain number, survey efficiency, etc. can be found in “QCSummary_V3_NG.csv”. The summary for site name, GPS coordinates, and number of images at each site can be found in “SitesSummary_V3_*.csv” files. Overall computational efficiency summary is reported in Table 4 of accompanying manuscript. Additionally, the nitrate concentration data used in this work was downloaded from an existing dataset published on ESS-DIVE (Boat-Dragged Sensor Hanford Reach.csv; Conner A. et al., 2020). We thank the United States Forest Service, Washington Department of Fish and Wildlife, Washington Department of Natural Resources, Cowiche Canyon Conservatory, Port of Benton, and the Confederated Tribes and Bands of the Yakama Nation for access to field locations where the data were collected. We also thank the Yakama Nation Tribal Council and Yakama Nation Fisheries for working with us to facilitate data collection and optimization of data usage according to their values and worldview.

54 ENVIRONMENTAL SCIENCES↗

Energy Community Atlas

The Energy Community Atlas provides efficient access to authoritative, curated, and relevant data that is vital to supporting energy planning, development, and economic growth across the U.S. In this effort, researchers at the National Energy Technology Laboratory (NETL) are utilizing advanced data visualization and transformation capabilities to develop an integrated, data atlas and resource focused on supporting energy community transitions to new manufacturing opportunities. Specifically, this project is working to find, acquire, integrate, and virtually host in a user-friendly, public and private solution from available resources, relevant to understanding and characterizing fossil energy communities themselves and inform energy planning, development, and economic growth opportunities, including opportunities for co-development to support manufacturing, critical materials, and more. This Atlas when complete is to offer a one-stop-shop for stakeholders to derive new insights to accelerate energy investments and strategic decision support needs. These are following datasets that are available as part of this ongoing project • Energy Community Atlas Map Package - This is ArcPro Map package and it contains all of the symbolized layers along with ArcPro map and geodatabase • Energy Community Atlas ArcGIS REST service - https://www.arcgis.com/apps/mapviewer/index.html?panel=gallery&suggestField=true&layers=537ced69bd88440380a62c2ec8aca30c • README Energy Community Atlas - Read me word document that has details about feature classes in Map package, ArcPro map and ArcGIS Rest Service

Bipartisan Infrastructure Law↗

ARM Shortwave Spectral Radiometry Strategy Review Report

A meeting of experts in shortwave (SW) spectral measurements was held in February 2019 to discuss the current state of the U.S. Department of Energy (DOE) Atmospheric Radiation Measurement (ARM) user facility instrumentation and the potential scientific impact of these measurements. Instrument mentors and users reported significant progress in hyperspectral measurement quality, with good-quality data sets now possible at several field campaigns and fixed sites. Ongoing filter-based measurement improvements, including addition of the 1.6-micron channel to the multifilter rotating shadowband radiometer (MFRSR) and lunar tracking mode of the Cimel sun photometers, were also lauded as exciting developments to improve retrievals of aerosol radiative properties and size distributions.

54 ENVIRONMENTAL SCIENCES↗

ARM Shortwave Spectral Radiometry Strategy Review Report

A meeting of experts in shortwave (SW) spectral measurements was held in February 2019 to discuss the current state of the U.S. Department of Energy (DOE) Atmospheric Radiation Measurement (ARM) user facility instrumentation and the potential scientific impact of these measurements. Instrument mentors and users reported significant progress in hyperspectral measurement quality, with good-quality data sets now possible at several field campaigns and fixed sites. Ongoing filter-based measurement improvements, including addition of the 1.6-micron channel to the multifilter rotating shadowband radiometer (MFRSR) and lunar tracking mode of the Cimel sun photometers, were also lauded as exciting developments to improve retrievals of aerosol radiative properties and size distributions.

54 ENVIRONMENTAL SCIENCES↗

DISCOVR: Development of Integrated Screening, Cultivar Optimization, and Verification Research

The DISCOVR consortium has developed and is applying an integrated platform and workflow for standardized, deep characterization of highly productive and resilient microalgae strains. New strains are screened using three consecutive tiers in a conceptual down-selection funnel to arrive at the most promising strains. At tier I, strains are screened on gradient incubators to determine their temperature and salinity tolerance range, and to evaluate their resistance to infectious agents (e.g., chytrids). At tier II, the strains’ winter and summer season biomass productivities are quantified in Laboratory Environmental Algae Pond Simulator (LEAPS) photobioreactors, and biomass composition is determined under N-replete and N-deplete conditions. At tier III, the best winter and summer season strains are evaluated in indoor crash ponds to determine their resilience to induced infections, and strains are tested in outdoor raceway ponds to confirm high biomass productivity and culture stability. The top strains are then evaluated in seasonal SOT outdoor pond culture trials at AzCATI, the dedicated Department of Energy SOT (State of Technology) testbed. Additional research is carried out on evaluating growth promoting molecules, reducing the impact of oxygen inhibition, optimizing pond operational conditions, measuring compositional shift dynamics, developing integrated pest management strategies, analysing culture health using 96 well-plate tools, implementing spectroradiometric monitoring and using machine learning to predict culture crashes.

Huesemann, Michael H↗

A Framework for Readiness Assessments of Utility-Scale Energy Storage

This report is part of a series investigating the potential for utility-scale energy storage in South Asia. This Readiness Assessment Framework for Utility-Scale Energy Storage forms the basis for forthcoming country-specific evaluations of policy and regulatory environments for energy storage in the region, beginning with India. These evaluations provide insights on the opportunities and barriers for energy storage growth and deployment in each country. This report offers the overarching framework for these evaluations. It is designed to be allow policymakers and regulators to quickly gauge how well existing policy and regulatory frameworks support investments in energy storage and can be applied in any jurisdiction regardless of its governance, regulatory, or market structure. It is not designed to recommend specific policy or regulatory solutions and does not inform whether energy storage is the best solution, among a range of possible technical and non-technical interventions, to meet system needs.

29 ENERGY PLANNING, POLICY, AND ECONOMY↗

An Overview of Policies Influencing Air Pollution from the Electricity Sector in South Asia

The electricity sector is a substantial source of air pollution and associated health problems in South Asia and elsewhere. Fossil-fueled power plants emit a wide variety of harmful pollutants. Those with the greatest health impacts are particulate matter and ozone. Once released into the atmosphere, there is no practical way to remove air pollutants, which means that policies designed to improve air quality have to limit the pollutants before release. However, tackling such pollution is challenging because developing economies also need to provide electricity as a basic necessity for their citizens and as an engine of economic growth. This report provides examples of policies impacting air pollution from the fossil-fuel electricity sector in the South Asian countries of Afghanistan, Bangladesh, Bhutan, India, the Maldives, Nepal, Pakistan, and Sri Lanka. Some of this information was difficult to locate, so this is not a comprehensive study, but rather an overview or "scan" of the sector that includes examples of (1) policies that directly regulate air quality by limiting emissions from specific point sources (by restricting operating hours, for instance), and (2) indirect policies that incentivize or disincentivize polluting activities, such as policies to encourage fuel switching, for example. The report shows (1) the great variation among the policy instruments used in each country, (2) that many countries, especially those that have a mismatch between seasonal demand and resource availability, could improve energy security and reduce air pollution through increased cross-border electricity trade, and (3) some countries have contradictory policies (promoting both coal and renewables, for instance).

29 ENERGY PLANNING, POLICY, AND ECONOMY↗