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At least 613 records · Page 34

All sources NASA NTRS DOE OSTI

NASA NTRSDate not supplied

Optimizing a Small RNAseq Analysis Pipeline for NASA GeneLab Using Open-Source Tools and Libraries

Small RNA sequencing (small RNAseq) is a powerful tool for studying the regulation of gene expression in various organisms. Small RNAseq has been leveraged in space biology research to study how expression of small RNAs, e.g. micro RNAs (miRNAs), small interfering RNAs (siRNAs), and piwi-interacting RNAs (piRNAs), change upon exposure to the space environment. NASA GeneLab currently hosts small RNAseq raw data derived from space-relevant experiments on the Open Science Data Repository (OSDR). To maximize the accessibility of these data to the scientific community, in addition to hosting raw data, which is only interpretable by bioinformaticians, GeneLab plans to process all small RNAseq datasets and make those processed data available to the scientific community via the OSDR. In this study, we present the development of the GeneLab standardized pipeline for processing small RNAseq datasets. Using human, plant, and synthetic small RNAseq datasets, we interrogate various open-source software and publicly available databases to evaluate their accuracy and reproducibility in each step of the pipeline. For quality control and adapter detection and trimming, we evaluated TrimGalore!, FASTX, SeqKit, and DNApi methods to optimize alignment to reference genomes. We compared BWA, Bowtie, and Bowtie2 to determine the optimal alignment tool. For each alignment tool we also assessed various reference databases, including Ensembl reference genomes and different types of small RNA reference databases, including genome, hairpin, and miRNA references from the miRbase and MirGeneDB databases. To quantify the aligned data, we compared SAMtools, HTSeq, and RSEM for counting alignment events from each alignment tool used. Finally, we evaluated various tools, including DESeq2 and EdgeR, for data normalization and subsequent differential expression analysis. We will present the results from our comparative analyses for each pipeline step and propose a consensus pipeline for processing small RNAseq data derived from various organisms exposed to the space environment.

SmallRNAseq, NASA GeneLab, quality control, adapte↗

NASA NTRSDate not supplied

Aviary: An Open-Source Multidisciplinary Design, Analysis, and Optimization Tool for Modeling Aircraft with Analytic Gradients

In recent years demands on aircraft design methods have begun to require higher degrees of coupling between disciplines and optimization in order to satisfy competing objectives involving large numbers of design parameters that define unconventional configurations. These expanding requirements have amplified a need for new and improved aircraft design, analysis, and optimization codes that are capable of performing coupled design and exploiting analytic gradients to perform gradient-based optimization where possible. To address this need, a new multidisciplinary design optimization and analysis tool called Aviary is presented. This tool, built on OpenMDAO, allows for tightly coupled, simultaneous aircraft and subsystem design using analytic gradients. Aviary includes methods from two NASA developed legacy aircraft analysis tools and provides native analytically differentiated calculations for five different disciplines (weights and sizing, aerodynamics, geometry, propulsion, and mission analysis), while also allowing external discipline analysis tools to be coupled, regardless of whether those tools can provide analytic gradients. Verification and preliminary examples and modeling efforts show Aviary’s ability to effectively model novel concepts and explore large and non-intuitive design spaces. Additionally, a multi-level user interface in Aviary creates an easy entry point for users with any level of multidisciplinary design, analysis, and optimization experience.

optimization↗

NASA NTRSDate not supplied

A Web-Based Negotiation Tool for Conflict Resolution in Upper Class E Traffic Management

In Upper Class E airspace 60,000 feet (or Flight level / FL600), vehicles such as High Altitude Long Endurance (HALE) balloons and slow fixed-wing gliders have diverse vehicle characteristics and limited maneuverability. Due to these unique characteristics of high-altitude operations, a new type of strategic negotiation-based conflict resolution method has been proposed to avoid potential conflict between vehicles in Upper Class E airspace, well in advance of the conflict point and with ample time for bilateral negotiation. This paper introduces the first real-time web-based negotiation tool for high-altitude operations. To facilitate negotiation, this tool incorporates a bilateral negotiation model with an algorithm to assess conflict risks and generate new flight trajectories with a given flight path deviation. This tool allows users to make decisions during negotiation manually and automatically while enforcing the needed constraints for negotiation to be successful. Operators can make decisions at every step while they interact with each other on separate devices. To conduct sensitivity analysis, a mechanism that automates human inputs to the user interface is also developed for this web-based negotiation tool, such that fast-time simulations can be constructed and used to explore various scenarios to gain insights into this web-based negotiation model. Using this tool, a study was conducted to evaluate the impact of different negotiation strategies, vehicle types, vehicle crossing angles, and operator response times during the negotiations on metrics such as total negotiation completion time, number of negotiation rounds, and extra flight distance to avoid the conflict due to negotiation, compared to ones without negotiation. The results suggest that operators benefit from using negotiated flight paths with quick response times, across various crossing angles and vehicle types. Various Negotiation Strategies are investigated to simulate the behaviors associated with different types of negotiations. The findings demonstrate that, in comparison to the conventional method where a single operator assumes full responsibility, negotiation-based strategic deconfliction reduces the total extra flight distance by an average of 24% - 27%. On an individual basis, each operator may be able to save an average of 65% of their extra flight distance.

Upper Class E Traffic Management (ETM)↗

NASA NTRSDate not supplied

Operationalizing “Wickedness” as Analytical and Creative Tools to Transform Aviation

As the world grows increasingly networked and complex, so do challenges faced by aviation and technology professionals (e.g., fighting wildfires and increasing access to healthcare). There is a need to develop new methods to tackle complex socio-technical problems relevant to aviation. The concept of “wicked” problems offers new methods and perspectives for framing complex challenges. In this paper, we present two modes of operationalizing “wickedness” used by NASA’s Convergent Aeronautics Solutions (CAS) Project to develop transformative innovations in aviation: as an analytical, evaluative tool and a creative, generative tool. Through project examples, we demonstrate that using wickedness as a creative tool during the design process enables rich problem exploration with diverse stakeholders and reflection on how a problem is formulated, while usage as an analytical tool can provide criteria for project selection if internal agreement on the definitions of such criteria is established. Operationalizing wickedness as a creative tool may also enable organizational development of a generative mindset to better adapt to our rapidly changing future.

Robyn C Richmond↗

NASA NTRSDate not supplied

Operationalizing “Wickedness” as Analytical and Creative Tools to Transform Aviation

Robyn Richmond↗

DOE OSTI2014

simuwatt - A Tablet Based Electronic Auditing Tool

'simuwatt Energy Auditor' (TM) is a new tablet-based electronic auditing tool that is designed to dramatically reduce the time and cost to perform investment-grade audits and improve quality and consistency. The tool uses the U.S. Department of Energy's OpenStudio modeling platform and integrated Building Component Library to automate modeling and analysis. simuwatt's software-guided workflow helps users gather required data, and provides the data in a standard electronic format that is automatically converted to a baseline OpenStudio model for energy analysis. The baseline energy model is calibrated against actual monthly energy use to ASHRAE Standard 14 guidelines. Energy conservation measures from the Building Component Library are then evaluated using OpenStudio's parametric analysis capability. Automated reporting creates audit documents that describe recommended packages of energy conservation measures. The development of this tool was partially funded by the U.S. Department of Defense's Environmental Security Technology Certification Program. As part of this program, the tool is being tested at 13 buildings on 5 Department of Defense sites across the United States. Results of the first simuwatt audit tool demonstration are presented in this paper.

32 ENERGY CONSERVATION, CONSUMPTION, AND UTILIZATI↗

DOE OSTI2015

Sampling Tools for Contaminated Hot Cells and Remotely Accessed Tanks

The U.S. Department of Energy (DOE) and the Pacific Northwest National Laboratory in collaboration with the Andronikashvili Institute of Physics in Tbilisi, Georgia have developed and tested technologies which sample contaminated areas inside hot cell facilities. Sampling locations in the facility include drains, ventilation exhaust ducts, sumps and shielded waste tanks. Tool designs for sampling each location include the ability to introduce the tool using existing ports, pass-throughs or inter-cells trolley and operate the tool with the existing remote manipulators. Areas inside the hot cell facility that would likely be contaminated from chemically processing irradiated reactor targets and fuel even after decontamination have been identified as potential sampling locations. Andronikashvili Institute of Physics in Tbilisi, Georgia has access to a reactor, hot cells, glove boxes and storage facilities that have been used to develop and test hot cell sampling technologies. These facilities are uncontaminated with radiological material and provide the ability to test these sampling technologies on representative equipment without contaminating the tools. Prototype tools have been fabricate and tested at these facilities using simulants representative of radiological contamination and waste.

Rostomashvili, Z.↗

DOE OSTI2018

Review of City Energy and Emissions Analysis Needs, Methods, and Tools

Currently over $300B is spent in US city economies to pay for energy. Many US cities are taking leading roles in exploring and promoting activities to improve energy efficiency and reduce green house gas (GHG) emissions. This paper summarizes a series of interviews with several leading cities regarding their needs, methods and tools they are using to model energy use and evaluate policies to reduce GHG. We also present a review of several analysis tools evaluated and used to explore urban scale design scenarios for two new major developments in the San Francisco area. We found that cities face great challenges managing data on their building stock, obtaining energy use data, and evaluating the different tools that are available to them. There is a need for better data management systems that allow tools to be more interoperable. The wide variety and features of today’s tools, and the fact that many of them are not open data models, create sub-optimal environments to conduct the energy analysis many cities are seeking to conduct.

32 ENERGY CONSERVATION, CONSUMPTION, AND UTILIZATI↗

DOE OSTI2019

Plant Water Profiler: A Tool for Understanding Water Use, Cost and Savings Potential for Manufacturing Plants

In the 1746 Poor Richard’s Almanack, Benjamin Franklin published “When the well’s dry, we know the worth of water” (Franklin, 1746); industrial water users have begun to see the truth in these words as they examine the potential and reality of water scarcity becoming a significant business risk. Through the authors’ interactions with manufacturers via the U.S. Department of Energy’s Better Plants program and Strategic Analysis projects, they realized that manufacturing facilities often do not fully understand the risks to the water supply and the consequential risks to their business. The authors’ also noticed that many facilities do not know how their water is used (baselining), how they compare with their peers (benchmarking), the actual cost impacts of water use (true cost of water), and potential areas for water savings. This results in a lack of motivation and ability to identify and implement effective water-efficiency measures.The Plant Water Profiler Tool (PWP) was created to help manufacturing plant management address these issues by identifying and accounting for water use in manufacturing operations, helping determine the true cost of water, and providing some high-level estimates for peer comparison. The PWP uses a water mass balance and common engineering equations to estimate water use by each of the facility’s systems (e.g., differentiating process water use from cooling and restroom water use), even when no submetering data is available. This new tool also helps users identify possible areas for water savings and associated water and energy cost savings, making it a potentially useful resource for corporations conducting water assessments. Additionally, governments and private organizations can use the methodology behind this tool to design a survey to help build a database of industrial water use. This paper and corresponding presentation provide an overview of current industrial water use practices and tools, as well as the value of determining the true cost of water. It also briefly describes the methodology behind the tool, then focuses on its functionality through an industrial case study and lessons learned from implementing the case study.

Armstrong, Kristina O.↗

DOE OSTI2022

Solid Oxide Cell Manufacturing Cost Tool

NETL has developed a detailed solid oxide cell (SOC) cost modeling tool. The tool provides a fully customizable spreadsheet that aids in cost estimation of large volume manufacturing of SOC (both fuel cell and electrolysis cell). The tool can be used to assist commercial developers and other end users to evaluate the costs of producing cells and stack components as SOC systems increase in scale. The manufacturing materials, labor, component costs, and specific equipment can be tailored to accurately reflect the desired manufacturing process. The tool is paired with a detailed user manual to assist in the understanding of the full functionality. This document is the spreadsheet tool. To access the associated user guide, please visit: <a href="https://netl.doe.gov/energy-analysis/details?id=f5823130-0d20-4a04-9c53-341682e58ac1" rel="noopener noreferrer">Energy Analysis | netl.doe.gov</a>

cost modeling↗

DOE OSTI2017

Pile Fuel Cladding Silo Deflector Plate Removal Project Using Long Reach Tooling and Suspended Abrasive Water Jet Cutting System - 17541

The Pile Fuel Cladding Silo (PFCS) at the Sellafield decommissioning, reprocessing and nuclear waste management facility in the UK was constructed in the late 1940-s and used for the storage of Intermediate Level Waste (ILW) arising from the Windscale Piles, Calderhall and Chapelcross Reactors until the 1960's. The PFCS is 21 metres high and comprises 6 identical tall compartments with the waste added to the silo via a charge-hole at the top of each compartment; each compartment is split by a central dividing wall that runs from the base of the silo to a few metres below the underside of the silo roof. A deflector plate assembly (DPA) supported on two horizontal beams is located between the top of the dividing wall and the roof and allowed the waste to spread as it fell into the silo and prevent excessive mounding. Sellafield Ltd is currently engaged in an overall programme of works to remove the waste for storage within modern ILW containers. Prior to the commencement of these works the Deflector Plate Assemblies (DPA) and beam structures within the silos are required to be removed to allow access for the waste retrievals equipment through the side of the silo at the point where the DPAs are situated. James Fisher Nuclear (JFN) and Sellafield Ltd have developed a system using suspended water jet cutting equipment combined with custom long reach tooling, installed through penetrations made in the side of the silo, to enable the remote size reduction of the DPA and beams within each compartment. The use of a low pressure suspended water jet cutting system has enabled a single water/abrasive hose to be routed down a tool deployment pole and allowed long hose lengths up to 80 m from pump to nozzle enabling siting of equipment on a congested and difficult access site. The use of lightweight, yet high strength, carbon fibre poles within the tools has enabled the deployment of tool end effectors at distances of up to 6.5 m from the compartment walls using a relatively small 60 mm diameter pole. This maximised articulation of the pole within the 300 mm wall penetrations to reach all areas of the DPA. Capability of the operators to install the tooling and size reduce DPA and beam assemblies have been demonstrated through the training on a Full Scale Test Rig (FSTR). The FSTR was integral to the development of the equipment and techniques and to providing assurance to the client that the project was technically achievable given the tight building restraints and safety issues. (authors)

12 MANAGEMENT OF RADIOACTIVE AND NON-RADIOACTIVE W↗

DOE OSTI2015

Enhancing performance assessments using the ASCEM tool-set - 15222

The Office of Soil and Groundwater Remediation within the U.S. Department of Energy's Office of Environmental Management (EM) is supporting development of the Advanced Simulation Capability for Environmental Management (ASCEM). ASCEM is an open source and modular computing framework that incorporates new advances and tools for predicting contaminant fate and transport in natural and engineered systems. ASCEM integrates modeling tools into a common work-flow that facilitates integrated approaches to modeling and site characterization, and enables robust and standardized assessments of performance and risk for EM cleanup and closure activities. The ASCEM project includes collaboration with end users engaged in performance assessments and subsurface simulation. Two working groups are engaged in performance assessment activities at the Hanford Site and Savannah River Site (SRS). The Hanford Site working group is focused on evaluating an alternative conceptual model that includes fine-scale heterogeneities. The baseline conceptual model for the performance assessment includes the large-scale stratigraphy at the site. The working group is applying the ASCEM tool-set to develop and evaluate alternative conceptual models and evaluate the effect of heterogeneities on long-term transport under rainfall-driven conditions. Because the heterogeneous models require long compute times due to increased model complexity, the simulations are implemented on a high-performance computing platform to reduce simulation times. The ASCEM Akuna work-flow enables efficient organization, simulation execution, and processing and visualization of results. Current performance assessments for waste tank closure at the SRS are limited to two-dimensional axi-symmetric representations. The SRS working group is collaborating with the site contractor to address technical review issues by resolving fine-scale tank features and simulating three-dimensional flow with Richards equation for selected closure scenarios using the ASCEM simulator, Amanzi. The Akuna tool-set is being applied to support model setup, sensitivity analysis, uncertainty quantification, and visualization. Both of the ASCEM working groups are addressing issues that cannot readily be evaluated with the existing tools. In these efforts, ASCEM is being used to provide technical underpinnings for ongoing performance assessments. (authors)

12 MANAGEMENT OF RADIOACTIVE AND NON-RADIOACTIVE W↗

DOE OSTI2016

Development of an Execution Strategy Analysis (ESA) Capability and Tool for the Management of Spent Nuclear Fuel (SNF) - 16575

An Execution Strategy Analysis (ESA) capability and tool are being developed to evaluate alternative execution strategies for future deployment of a consolidated Interim Storage Facility using a consent-based siting process per the Administration's Strategy for the Management and Disposal of Used Nuclear Fuel and High-Level Radioactive Waste (Strategy). Application of an ESA approach not only leverages but also goes beyond traditional project analysis tools. The ESA tool allows for ongoing performance assessment of the evolving project execution plan that takes into account significant assumptions, risks, and uncertainties throughout the project lifecycle. The ESA process and tool will be used to support the development of plans, budgets, and alternative execution/implementation strategies for meeting the goals of the Strategy. This paper describes the development of the ESA capability and tool and identifies the value of applying such a capability in implementing a long-term strategy for managing spent nuclear fuel and high-level radioactive waste. (authors)

12 MANAGEMENT OF RADIOACTIVE AND NON-RADIOACTIVE W↗

DOE OSTI2018

Systems and Process Engineering Supporting Tool Development for Reactor Internals Decommissioning - 18552

One process of arriving at optimized design or selection of tooling for decommissioning of nuclear reactors is examined. The methodical process, as descried in this presentation is one that has been very successfully implemented on a number of CANDU{sup R} reactor internals projects to date and is still being pursued on current projects. The influencing factors and data used to define the design requirements and technical specifications of the tooling systems and individual tools are briefly described. The various stages of the process are described in some detail with examples of actual tooling systems thus built. Finally the benefits of this type of systematic approach to tool design, is described. (author)

12 MANAGEMENT OF RADIOACTIVE AND NON-RADIOACTIVE W↗

DOE OSTI2019

Panel Session 91: Benefits of Commercial Tools and Practices to DOE Cleanup Nuclear Sites

This panel focused on the benefits of applying commercial tools and best practices to DOE cleanup sites. The panelist presented tools and applications that have been demonstrated on commercial and other government sites that are readily available to address similar challenges found on many DOE cleanup sites. Attendees gained an understanding of a few of the commercial applications that have resulted in innovation and cost savings. Presentations proposed include: 1 - Internet of Things and Humans - IoTH (Javid Kelley, Perma-Fix Environmental Services (USA)); 2 - Commercial Tools and Practices to Cleanup DOE Nuclear Sites (Mark Lesinski, Canadian Nuclear Laboratories (Canada)); 3 - Stakeholder-Engaged Structured Decision Making and GISDT - Guided Interactive Statistical Decision Tools (Paul Black, Neptune and Company, Inc. (USA)); 4 - Benefits of Commercial Tools and Practices to DOE Cleanup of Nuclear Sites - Panel 091 (Kevin Smith, PAE (USA)); 5 - MAECTITE Treatment Process Overview (Daniel Caputo, Sevenson Environmental Services, Inc. (USA))

12 MANAGEMENT OF RADIOACTIVE AND NON-RADIOACTIVE W↗

DOE OSTI2020

ISOCS-based Extended In Situ Gamma Spectrometry Services Tool SuperISOCS for Waste Measurements - 20275

Canberra's In Situ Object Counting System (ISOCS) is an established tool used for gamma spectrometry. It allows physical representation of complex geometries and mathematical calculation of the calibration function while avoiding the need for radioisotope standards. ISOCS provides a large range of templates to generate the geometry for most nuclear waste components in nuclear facilities. Nonetheless, there are some complex geometries where the accuracy attainable is limited by the conventional ISOCS templates. An ISOCS-based extended in-situ Gamma Spectrometry service tool has been developed, based on the so-called SuperISOCS (SISOCS) software. This tool was developed to generate the most complex geometries. The principle of geometry construction is based on the composition of 8 different primitive geometries. The primitive object is able to be cut and to change a part of an object. An object is able to overlap to another one to form a more complex object. These functions refine the modelled geometry compared to the real objects and decrease the measurement systematic error because they allow the mathematical model to represent the real-life geometry more faithfully through reducing the approximations and simplifications that need to be made The algorithm of SISOCS is the same as that of standard ISOCS. A set of calculations was done in comparison with MCNP efficiency calculation and SISOCS results. 80 different models were compared between SISOCS and MCNP, with added 30 cases compared between ISOCS and SISOCS. The average differences were less than 2%, for all energy's efficiency calculations. In this paper we illustrate the benefits that this new tool can provide, in terms of improved accuracy for complex realistic geometries, through simulation of some example scenarios. Furthermore, we demonstrate, through SISOCS modelling of the real object data test, the comparison between SISOCS to ISOCS calculations for the same geometry. This paper describes the added functions that are easily employed using SISOCS. Our results show the potential application and benefit of this technique for real waste assay projects and the way to integrate the tool into the waste assay systems. (authors)

12 MANAGEMENT OF RADIOACTIVE AND NON-RADIOACTIVE W↗

DOE OSTI2022

Need for advanced research reactors for the next-generation reactor physics, analysis tools, and technology

Full text of publication follows. There is an urgent need for design and deployment of advanced research and test reactors in support of design, licensing and operation of advanced power reactors and education of next generation nuclear workforce. Existing research reactors mostly were designed and constructed decades ago with the main objectives of training operators, performing reactor physics experiments, and educating nuclear engineers and scientists. There are already gaps and significant concern about future capabilities for the existing research reactor facilities to address modern instrumentation and/or flexible environments for: performing reactor physics studies for advanced designs which have significantly different core materials forms and compositions, reactor shapes and size; validation of advanced high-fidelity software; development of machine learning algorithms for enhancement of human-machine collaboration in support of reactor monitoring, operation and safeguards; and, effective education of the next-generation workforce. The authors will focus on the need for advanced research reactors to improve and validate fast and accurate simulation tools for high-fidelity modeling and analysis of nuclear reactors in support of their design, optimization, licensing, operation, and monitoring. In the past, simulation tools were limited to relatively coarse models using approximate methodologies that benefited from two main factors: i) allowance for large margins and tolerances; ii) ability to construct prototype (e.g., zero power) reactors for adjustment of approximate methodologies. The next generation reactors have to be designed mainly by using novel high-fidelity computational tools that are accurate and fast, and therefore can be used for parametric studies and uncertainty quantification. To sufficiently demonstrate the accuracy of these tools, advanced research reactors are needed. The authors argue the need for new computational paradigms such as the MRT (Multistage, Response- function Transport) methodology which has resulted in the development of the novel high-fidelity RAPID (Real-time Analysis for Particle-transport and In-situ Detection) code system. Such code systems have to be robust in modeling any complex system, and should be fast and accurate, henceforth their uncertainties can be quantified at reasonable costs. Again, advanced research reactors are needed for the validation of the fidelity and accuracy of new computational tools. (authors)

21 SPECIFIC NUCLEAR REACTORS AND ASSOCIATED PLANTS↗

DOE OSTI2024

Developing a Mapping Inquiry Tool and Geodatabase to Support Characterization of Candidate Geologic Carbon Storage Sites

Poster to showcase the Class VI Mapping Inquiry Tool (C6 MapIT) and support geodatabase available on EDX. C6 MapIT and the underpinning Class VI Data Support Tool Geodatabase serve as comprehensive resources to aid with understanding data availability and supporting the initial stages of Class VI siting and permit applications. In addition to enabling users to explore available spatial data, additional resources are provided to empower users to find more information, such as links to documentation to support project goals, a query tool for USGS publications, and links to relevant sections of the EPA Class VI documentation. Safe and appropriate selection of UIC Class VI well sites is key as the U.S. makes the energy transition. The Class VI Mapping Inquiry Tool and Class VI Data Tool Geodatabase are valuable, intuitive resources that empower commercial and industry stakeholders to explore, analyze, and acquire Class VI related data.

Pantaleone, Scott↗