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At least 613 records · Page 34
All sourcesNASA NTRSDOE OSTI
DOE OSTI2025

Photometry of Outer Solar System Objects from the Dark Energy Survey. II. A Joint Analysis of Trans-Neptunian Absolute Magnitudes, Colors, Light Curves and Dynamics

For the 696 trans-Neptunian objects (TNOs) with absolute magnitudes 5.5 < H r < 8.2 detected in the Dark Energy Survey, we characterize the relationships between their dynamical state and physical properties—namely H r , indicating size; colors, indicating surface composition; and flux variation semiamplitude A, indicating asphericity and surface inhomogeneity. We seek “birth” physical distributions that can recreate these parameters in every dynamical class. We show that the observed colors of these TNOs are consistent with two Gaussian distributions in griz space, “near-infrared bright” (NIRB) and “near-infrared faint” (NIRF), presumably an inner and outer birth population, respectively. We find a model in which both the NIRB and NIRF H r and A distributions are independent of current dynamical states, supporting their assignment as birth populations. All objects are consistent with a common rolling p(H r ), but NIRF objects are significantly more variable. Cold classicals (CCs) are purely NIRF, while hot classical (HC), scattered, and detached TNOs are consistent with ≈ 70% NIRB and the resonance NIRB fractions show significant variation. The NIRB components of the HCs and of some resonances have broader inclination distributions than the NIRFs, i.e. their current dynamics retains information about birth location. We find evidence for radial stratification within the birth NIRB population, in that HC NIRBs are on average redder than detached or scattered NIRBs; a similar effect distinguishes CCs from other NIRFs. We estimate total object counts and masses of each class within our H r range. These results will strongly constrain models of the outer solar system.

79 ASTRONOMY AND ASTROPHYSICS↗
DOE OSTI2022

Resolving the Chemical Formula of Nesquehonite via NMR Crystallography, DFT Computation, and Complementary Neutron Diffraction

Nesquehonite is a magnesium carbonate mineral relevant to carbon sequestration envisioned for carbon capture and storage of CO 2 . Its chemical formula remains controversial today, assigned as either a hydrated magnesium carbonate [MgCO 3 · 3H 2 O], or a hydroxy- hydrated- magnesium bicarbonate [Mg(HCO 3 )OH · 2H 2 O]. Here, the resolution of this controversy is central to understanding this material‘s thermodynamic, phase, and chemical behavior. In an NMR crystallography study, using rotational-echo double-resonance 13 C{ 1 H} (REDOR), 13 C- 1 H distances are determined with precision, and the combination of 13 C static NMR lineshapes and density functional theory (DFT) calculations are used to model different H atomic coordinates. [MgCO 3 · 3H 2 O] is found to be accurate, and evidence from neutron powder diffraction bolsters these assignments. Refined H positions can help understand how H-bonding stabilizes this structure against dehydration to MgCO 3 . More broadly, these results illustrate the power of NMR crystallography as a technique for resolving questions where X-ray diffraction is inconclusive.

37 INORGANIC, ORGANIC, PHYSICAL, AND ANALYTICAL CH↗
NASA NTRS1987

Robust eigenstructure assignment by a projection method: Application using multiple optimization criteria

New ideas which lead to feedback control laws for large flexible structures which are insensitive to model uncertainty are presented. A pole placement method is presented which leads to near-unitary closed loop eigenvectors, and a new method is introduced to design the control while simultaneously considering three competing measures of optimality. Robustness versus Integral algorithms are applicable to at least moderately high-dimensioned systems. In the present discussion, controls for two coupled flexible bodies are considered. A 6x24 gain matrix is designed to control a 12 modes system using 6 actuators. Researchers also developed control laws for the R2P2 simulator at Martin Marietta; in this case 3 actuators are used to control a 12th order system. Simulation studies indicate that researchers indeed achieved robust designs without significant difficulties associated with spillover into the uncontrolled modes. Here, several key ideas and numerical results are given. In the references, details of the formulation, discussions of salient features, and connection to the availiable literature are given.

Junkins, J. L.↗
NASA NTRS1993

Aspects of modelling the tectonics of large volcanoes on the terrestrial planets

Analytic solutions for the responses of planetary lithospheres to volcanic loads have been used to model faulting and infer elastic plate thicknesses. Predictions of the distribution of faulting around volcanic loads, based on the application of Anderson's criteria for faulting to the results of the models, do not agree well with observations. Such models do not give the stress state in the load itself, but only suggest a state of horizontal compressive stress there. Further, these models have considered only the effect of an instantaneously emplaced load. They do not address the time evolution of stresses, nor do they consider the effect of a load which grows. A finite element approach allows us to assign elements to the load itself, and thus permits calculation of the stress state and stress history within the edifice. The effects of episodic load growth can also be treated. When these effects are included, models give much better agreement with observations. We use the finite element code TECTON to construct axisymmetric models of volcanoes resting on an elastic lithospheric plate overlying a viscoelastic asthenosphere. We have implemented time-dependent material properties in order to simulate incremental volcano growth. The viscoelastic layer was taken to extend to a sufficient depth so that a rigid lower boundary has no significant influence on the results. The code first calculates elastic deformations and stresses and then determines the time-dependent viscous deformations and stresses. Time in the model scales as the Maxwell time tau(m) in the asthenosphere. We consider a volcano 25 km in height and 200 km in radius on an elastic lithosphere 40 km thick (parameters approximately appropriate to Ascraeus Mons). The volcano consists of three load increments applied at intervals of 1000 tau(m). Contours of maximum deviatoric stress in the fully-grown edifice at the conclusion of flexure (t = 3000 tau(m)) are shown.

Mcgovern, Patrick J.↗
DOE OSTI2022

An energy-based study of the embedded element method for explicit dynamics

Abstract The embedded finite element technique provides a unique approach for modeling of fiber-reinforced composites. Meshing fibers as distinct bundles represented by truss elements embedded in a matrix material mesh allows for the assignment of more specific material properties for each component rather than homogenization of all of the properties. However, the implementations of the embedded element technique available in commercial software do not replace the material of the matrix elements with the material of the embedded elements. This causes a redundancy in the volume calculation of the overlapping meshes leading to artificially increased stiffness and mass. This paper investigates the consequences in the energy calculations of an explicit dynamic model due to this redundancy. A method for the correction of the edundancy within a finite element code is suggested which removes extra energy and is shown to be effective at correcting the energy calculations for large amounts of redundant volume.

Martin, Valerie A.↗
DOE OSTI2023

Files and scripts to support manuscript Shuman et al 2023 FATES-SPITFIRE ecosystem assembly across tropics

The dataset includes the parameter and domain files, relevant output files, and scripts to generate simulations and perform analysis with Jupyter notebooks that support the manuscript Shuman, JK et al 2023 “Dynamic ecosystem assembly and escaping the “fire-trap” in the tropics: Insights from FATES_15.0.0”. We have adapted the fire-behavior and effects module, SPITFIRE, for use with the Functionally Assembled Terrestrial Ecosystem Simulator (FATES), a size-structured vegetation demographic model. We test how climate, fire regime and fire-tolerance plant traits interact to determine the biogeography of tropical forests and grasslands. We assign different fire-tolerance strategies based on crown, leaf and bark characteristics, which are key observed fire-tolerance traits across woody plants. For these simulations, three types of vegetation compete for resources: a fire-vulnerable tree with thin bark, a vulnerable deep crown and fire-intolerant foliage; a fire-tolerant tree with thick bark, a thin crown and fire-tolerant foliage; and a fire-promoting C4 grass. We explore the model sensitivity to a critical parameter governing fuel moisture, and show that drier fuels promote increased burning, an expansion of area for grass and fire-tolerant trees and a reduction of area for fire-vulnerable trees. This conversion to lower biomass or grass areas with increased fuel drying results in increased fire burned area and its effects, which could fee back to local climate variables. Simulated size-based fire mortality for trees less than 20 cm in diameter and those with fire-vulnerable traits is higher than that for larger and/or fire-tolerant trees, in agreement with observations. Fire-disturbed forests demonstrate reasonable productivity and capture observed patterns of aboveground biomass in areas dominated by natural vegetation for the recent historical period, but have a large bias in less disturbed areas. Though the model predicts a greater extent of burned fraction than observed in areas with grass dominance, the resulting biogeography of fire-tolerant, thick-bark trees and fire-vulnerable, thin-bark trees corresponds to observations across the tropics. In areas with more than 2500 mm of precipitation, simulated fire frequency and burned area are low, with fire intensities below 150 kW m-1, consistent with observed understory fire behavior across the Amazon. Areas drier than this demonstrate fire intensities consistent with those measured in savannas and grasslands, with high values up to 4000 kW m-1. The results support a positive grass-fire feedback across the region, and suggest that forests which have existed without frequent burning may be vulnerable at higher fire intensities, which is of greater concern under intensifying climate and land use pressures. The ability of FATES to capture the connection between fire disturbance and plant fire-tolerance strategies in determining biogeography provides a useful tool for assessing the vulnerability and resilience of these critical carbon storage areas under changing conditions across the tropics.

54 ENVIRONMENTAL SCIENCES↗
DOE OSTI2024

Dynamic ecosystem assembly and escaping the “fire trap” in the tropics: insights from FATES_15.0.0

Abstract. Fire is a fundamental part of the Earth system, with impacts on vegetation structure, biomass, and community composition, the latter mediated in part via key fire-tolerance traits, such as bark thickness. Due to anthropogenic climate change and land use pressure, fire regimes are changing across the world, and fire risk has already increased across much of the tropics. Projecting the impacts of these changes at global scales requires that we capture the selective force of fire on vegetation distribution through vegetation functional traits and size structure. We have adapted the fire behavior and effects module, SPITFIRE (SPread and InTensity of FIRE), for use with the Functionally Assembled Terrestrial Ecosystem Simulator (FATES), a size-structured vegetation demographic model. We test how climate, fire regime, and fire-tolerance plant traits interact to determine the biogeography of tropical forests and grasslands. We assign different fire-tolerance strategies based on crown, leaf, and bark characteristics, which are key observed fire-tolerance traits across woody plants. For these simulations, three types of vegetation compete for resources: a fire-vulnerable tree with thin bark, a vulnerable deep crown, and fire-intolerant foliage; a fire-tolerant tree with thick bark, a thin crown, and fire-tolerant foliage; and a fire-promoting C4 grass. We explore the model sensitivity to a critical parameter governing fuel moisture and show that drier fuels promote increased burning, an expansion of area for grass and fire-tolerant trees, and a reduction of area for fire-vulnerable trees. This conversion to lower biomass or grass areas with increased fuel drying results in increased fire-burned area and its effects, which could feed back to local climate variables. Simulated size-based fire mortality for trees less than 20 cm in diameter and those with fire-vulnerable traits is higher than that for larger and/or fire-tolerant trees, in agreement with observations. Fire-disturbed forests demonstrate reasonable productivity and capture observed patterns of aboveground biomass in areas dominated by natural vegetation for the recent historical period but have a large bias in less disturbed areas. Though the model predicts a greater extent of burned fraction than observed in areas with grass dominance, the resulting biogeography of fire-tolerant, thick-bark trees and fire-vulnerable, thin-bark trees corresponds to observations across the tropics. In areas with more than 2500 mm of precipitation, simulated fire frequency and burned area are low, with fire intensities below 150 kW m−1, consistent with observed understory fire behavior across the Amazon. Areas drier than this demonstrate fire intensities consistent with those measured in savannas and grasslands, with high values up to 4000 kW m−1. The results support a positive grass–fire feedback across the region and suggest that forests which have existed without frequent burning may be vulnerable at higher fire intensities, which is of greater concern under intensifying climate and land use pressures. The ability of FATES to capture the connection between fire disturbance and plant fire-tolerance strategies in determining biogeography provides a useful tool for assessing the vulnerability and resilience of these critical carbon storage areas under changing conditions across the tropics.

54 ENVIRONMENTAL SCIENCES↗
DOE OSTI2021

Structure of 3-mercaptopropionic acid dioxygenase with a substrate analog reveals bidentate substrate binding at the iron center

Thiol dioxygenases are a subset of nonheme iron oxygenases that catalyze the formation of sulfinic acids from sulfhydryl-containing substrates and dioxygen. Among this class, cysteine dioxygenases (CDOs) and 3-mercaptopropionic acid dioxygenases (3MDOs) are the best characterized, and the mode of substrate binding for CDOs is well understood. However, the manner in which 3-mercaptopropionic acid (3MPA) coordinates to the nonheme iron site in 3MDO remains a matter of debate. A model for bidentate 3MPA coordination at the 3MDO Fe-site has been proposed on the basis of computational docking, whereas steady-state kinetics and EPR spectroscopic measurements suggest a thiolate-only coordination of the substrate. To address this gap in knowledge, we determined the structure of Azobacter vinelandii 3MDO (Av3MDO) in complex with the substrate analog and competitive inhibitor, 3-hydroxypropionic acid (3HPA). The structure together with DFT computational modeling demonstrates that 3HPA and 3MPA associate with iron as chelate complexes with the substrate-carboxylate group forming an additional interaction with Arg168 and the thiol bound at the same position as in CDO. A chloride ligand was bound to iron in the coordination site assigned as the O 2 -binding site. Supporting HYSCORE spectroscopic experiments were performed on the (3MPA/NO)-bound Av3MDO iron nitrosyl (S = 3/2) site. In combination with spectroscopic simulations and optimized DFT models, this work provides an experimentally verified model of the Av3MDO enzyme–substrate complex, effectively resolving a debate in the literature regarding the preferred substrate-binding denticity. These results elegantly explain the observed 3MDO substrate specificity, but leave unanswered questions regarding the mechanism of substrate-gated reactivity with dioxygen.

36 MATERIALS SCIENCE↗
NASA NTRS2014

GRAIL Refinements to Lunar Seismic Structure

Joint interpretation of disparate geophysical datasets helps reduce drawbacks that can result from analyzing them individually. The Apollo seismic network was situated on the lunar nearside surface in a roughly equilateral triangle having sides approximately 1000 km long, with stations 12/14 nearly co-located at one corner. Due to this limited geographical extent, near-surface ray coverage from moonquakes is low, but increases with depth. In comparison, gravity surveys and their resulting gravity anomaly maps have traditionally offered optimal resolution at crustal depths. Gravimetric maps and seismic data sets are therefore well suited to joint inversion, since the complementary information reduces inherent model ambiguity. Previous joint inversions of the Apollo seismic data (seismic phase arrival times) and Clementine- or Lunar Prospector-derived gravity data (mass and moment of inertia) attempted to recover the subsurface structure of the Moon by focusing on hypothetical lunar compositions that explored the density/velocity relationship. These efforts typically searched for the best fitting thermodynamically calculated velocity/density model, and allowed variables like core size, velocity, and/or composition to vary freely. Seismic velocity profiles derived from the Apollo seismic data through travel time inversion vary both in the depth of the crust and mantle layers, and the seismic velocities and densities assigned to those layers. The lunar mass and moment of inertia likewise only constrain gross variations in the density profile beyond that of a uniform density sphere. As a result, composition and structure models previously obtained by jointly inverting these data retain the original uncertainties inherent in the input data sets. We perform a joint inversion of Apollo seismic delay times and gravity data collected by the GRAIL lunar gravity mission, in order to recover seismic velocity and density as a function of latitude, longitude, and depth within the Moon. We relate density (p) to seismic velocity (v) using a depth-dependent linear relationship. The corresponding coefficient (B) can reflect a variety of material properties, including temperature and composition. The inversion seeks to recover the set of p, v, and B perturbations that minimize (in a least-squares sense) the difference between the observed and calculated data.

Weber, Renee C.↗
NASA NTRS2013

GRAIL Refinements to Lunar Seismic Structure

Joint interpretation of disparate geophysical datasets helps to reduce drawbacks that can result from analyzing them individually. The Apollo seismic network was situated on the lunar nearside surface in a roughly equilateral triangle having sides approximately 1000 km long, with stations 12/14 nearly co‐located at one corner. Due to this limited geographical extent, near‐surface ray coverage from moonquakes is low, but increases with depth. In comparison, gravity surveys and their resulting gravity anomaly maps have traditionally offered optimal resolution at crustal depths. Gravimetric maps and seismic data sets are therefore well suited to joint inversion, since the complementary information reduces inherent model ambiguity. Previous joint inversions of the Apollo seismic data (seismic phase arrival times) and Clementine‐ or Lunar Prospector‐derived gravity data (mass and moment of inertia) attempted to recover the subsurface structure of the Moon by focusing on hypothetical lunar compositions that explore the density/velocity relationship. These efforts typically search for the best fitting thermodynamically calculated velocity/density model, allowing variables like core size, velocity, and/or composition to vary freely. Seismic velocity profiles previously derived from the Apollo seismic data through inversion of travel times vary both in the depth of the crust and mantle layers, and the seismic velocities and densities assigned to those layers. The lunar mass and moment of inertia likewise only constrain gross variations in the density profile beyond that of a uniform density sphere. As a result, composition and structure models previously obtained by jointly inverting these data retain the original uncertainties inherent in the input data sets. We will perform a joint inversion of Apollo seismic delay times and gravity data collected by the GRAIL lunar gravity mission, in order to recover seismic velocities and density as a function of latitude, longitude, and depth within the Moon. We will relate density to seismic velocity using a linear relationship that is allowed to be depth‐dependent. The corresponding coefficient (B) can reflect a variety of material properties that vary with depth, including temperature and composition. The inversion seeks to recover the set of density, velocity, and B‐coefficient perturbations that minimize (in a least‐squares sense) the difference between the observed and calculated data.

Weber, Renee C.↗
NASA NTRS2005

Partial Model of Insulator/Insulator Contact Charging

Two papers present a two-phase equilibrium model that partly explains insulator/ insulator contact charging. In this model, a vapor of ions within a gas is in equilibrium with a submonolayer of ions of the same species that have been adsorbed on the surface of an insulator. The surface is modeled as having localized states, each with a certain energy of adsorption for an ion. In an earlier version of the model described in the first paper, the ions do not interact with each other. Using the grand canonical ensemble, the chemical potentials of both vapor and absorbed phases are derived and equated to determine the vapor pressure. If a charge is assigned to the vapor particles (in particular, if single ionization is assumed), then the surface charge density associated with adsorbed ions can be calculated as a function of pressure. In a later version of the model presented in the second paper, the submodel of the vapor phase is extended to include electrostatic interactions between vapor ions and adsorbed ones as well as the screening effect, at a given distance from the surface, of ions closer to the surface. Theoretical values of this model closely match preliminary experimental data on the discharge of insulators as a function of pressure.

Hogue, Michael↗
NASA NTRS1976

Monte Carlo calculations of diatomic molecule gas flows including rotational mode excitation

The direct simulation Monte Carlo method was used to solve the Boltzmann equation for flows of an internally excited nonequilibrium gas, namely, of rotationally excited homonuclear diatomic nitrogen. The semi-classical transition probability model of Itikawa was investigated for its ability to simulate flow fields far from equilibrium. The behavior of diatomic nitrogen was examined for several different nonequilibrium initial states that are subjected to uniform mean flow without boundary interactions. A sample of 1000 model molecules was observed as the gas relaxed to a steady state starting from three specified initial states. The initial states considered are: (1) complete equilibrium, (2) nonequilibrium, equipartition (all rotational energy states are assigned the mean energy level obtained at equilibrium with a Boltzmann distribution at the translational temperature), and (3) nonequipartition (the mean rotational energy is different from the equilibrium mean value with respect to the translational energy states). In all cases investigated the present model satisfactorily simulated the principal features of the relaxation effects in nonequilibrium flow of diatomic molecules.

Yoshikawa, K. K.↗
DOE OSTI2023

Ion exchange behavior of astatine and bismuth

Astatine and bismuth sorption on several ion exchange resins from nitric acid media has been studied. This work covers commercially available resins Dowex 50 × 4, MP thiol, Dowex 1 × 8, and TEVA. One of the main advantages of using ion exchangers for astatine separation and purification is the absence of any organic media in the effluent in comparison with extraction chromatography resins. The behavior of the above-mentioned metals was investigated in up to 4 M HNO 3 solutions. The determined distribution coefficients are greater than 1 for all the resins studied, reaching 10 4 for MP thiol and TEVA resins. The interaction of nitric acid with an anion exchanger in Cl-form results in an exchange reaction, where AtO + chloro complexes can form. To understand the astatine behavior under these conditions, stability constants of AtOCl and AtOCl 2 – complexes have been reevaluated and discrepancy in the literature values has been eliminated. For each resin a thermodynamic model has been developed to suggest a possible mechanism of astatine sorption. Literature and new experimental data on bismuth sorption by studying resins in nitric acid media have been reviewed and a mathematical model to describe its behavior has been suggested. Furthermore, a ratio of corresponding fit functions of At and Bi assigned to the same resin and acidity has been used to estimate the separation factors of these elements.

37 INORGANIC, ORGANIC, PHYSICAL, AND ANALYTICAL CH↗
DOE OSTI2023

Impact of bioenergy feedstock carbon farming on sustainable aviation fuel viability in the United States

Biomass-derived sustainable aviation fuel holds significant potential for decarbonizing the aviation sector. Its long-term viability depends on crop choice, longevity of soil organic carbon (SOC) sequestration, and the biomass-to-biojet fuel conversion efficiency. We explored the impact of fuel price and SOC value on viable biojet fuel production scale by integrating an agroecosystem model with a field-to-biojet fuel production process model for 1,4-dimethylcyclooctane (DMCO), a representative high-performance biojet fuel molecule, from Miscanthus, sorghum, and switchgrass. Assigning monetary value to SOC sequestration results in substantially different outcomes than an increased fuel selling price. If SOC accumulation is valued at $185/ton CO 2 , planting Miscanthus for conversion to DMCO would be economically cost-competitive across 66% of croplands across the continental United States (US) by 2050 if conventional jet fuel remains at $0.74/L (in 2020 US dollars). Cutting the SOC sequestration value in half reduces the viable area to 54% of cropland, and eliminating any payment for SOC shrinks the viable area to 16%. If future biojet fuel prices increase to $1.24/L-Jet A-equivalent, 48 to 58% of the total cultivated land in the United States could support a more diverse set of feedstocks including Miscanthus, sorghum, or switchgrass. Among these options, only 8–14% of the area would be suitable exclusively for Miscanthus cultivation. These findings highlight the intersection of natural solutions for carbon removal and the use of deep-rooted feedstocks for biofuels and biomanufacturing. The results underscore the need to establish clear and consistent values for SOC sequestration to enable the future bioeconomy.

09 BIOMASS FUELS↗
DOE OSTI2022

α-cluster structure of 18 Ne

In this work, we investigate α-clustering in 18 Ne and compare it with what is known about clustering in the mirror nucleus 18 O. The excitation function for resonant elastic scattering of 14 O + α was measured in inverse kinematics using the TexAT active-target detector system, covering excitation energies from 8 to 17 MeV. The data were analyzed using a multi-channel R-matrix approach. Detailed spectroscopic information—including excitation energies, spin and parity assignments, and partial α and total widths—was extracted from the R-matrix analysis and compared with theoretical models and previously available data. Correspondence between levels in 18 O and 18 Ne is established. An extensive shell-model analysis of the 18 O– 18 Ne mirror pair shows very good agreement between theory and experiment, especially in the distribution of clustering strength. The comparison reveals that certain states, particularly at higher excitation energies, exhibit significantly stronger α-cluster character than predicted. This suggests that these states have a collective structure aligned with the corresponding α-reaction channel.

6 ≤ A ≤ 19↗
DOE OSTI2025

Direct observation of 𝛽 and 𝛾 decay from a high-spin long-lived isomer in 187 Ta

187 Ta (Z = 73, N = 114) is located in the neutron-rich A ≈ 190 region where a prolate-to-oblate shape transition via triaxial softness is predicted to take place. A preceding work on the K π = (25/2 - ) isomer and a rotational band to which the isomer decays carried out by the same collaboration revealed that axial symmetry is slightly violated in this nucleus. Here, this paper focuses on a higher-lying isomer, which was previously identified at 2933(14) keV by mass measurements with the Experimental Storage Ring at GSI. The isomer of interest has been populated by a multinucleon transfer reaction with a 136 Xe primary beam incident on a natural tungsten target, using the KEK Isotope Separation System at RIKEN. New experimental findings obtained in the present paper include the internal and external β-decay branches from the high-spin isomer and a revised half-life of 136(24) s. The evaluated hindrances for K-forbidden transitions put constraints on the spin-parity assignment, which can be interpreted as being ascribed to a prolate shape with a five-quasiparticle configuration by model calculations.

beta decay↗
DOE OSTI2025

Autonomous Anomaly Detection For Continuous Streams

The code implements the Isolation Forest (IFML) algorithm within the digital twin (DT) of the AGN-201 nuclear reactor. The DT captures real-time operational data including control rod positions, reactor power, and temperature. The IFML model isolates anomalies by detecting patterns that deviate from expected operational behavior. The algorithm recursively partitions the data and assigns anomaly scores based on the isolation of rare and different events. By tuning parameters specific to the reactor’s operational data, the IFML identifies deviations such as unauthorized material insertions or reactor reactivity shifts. The system streams data using LabView and integrates with the DeepLynx data warehouse for anomaly processing.

Trevino, Eduardo↗
DOE OSTI2023

classLog: Logistic regression for the classification of genetic sequences

Introduction Sequencing and phylogenetic classification have become a common task in human and animal diagnostic laboratories. It is routine to sequence pathogens to identify genetic variations of diagnostic significance and to use these data in realtime genomic contact tracing and surveillance. Under this paradigm, unprecedented volumes of data are generated that require rapid analysis to provide meaningful inference. Methods We present a machine learning logistic regression pipeline that can assign classifications to genetic sequence data. The pipeline implements an intuitive and customizable approach to developing a trained prediction model that runs in linear time complexity, generating accurate output rapidly, even with incomplete data. Our approach was benchmarked against porcine respiratory and reproductive syndrome virus (PRRSv) and swine H1 influenza A virus (IAV) datasets. Trained classifiers were tested against sequences and simulated datasets that artificially degraded sequence quality at 0, 10, 20, 30, and 40%. Results When applied to a poor-quality sequence data, the classifier achieved between >85% to 95% accuracy for the PRRSv and the swine H1 IAV HA dataset and this increased to near perfect accuracy when using the full dataset. The model also identifies amino acid positions used to determine genetic clade identity through a feature selection ranking within the model. These positions can be mapped onto a maximum-likelihood phylogenetic tree, allowing for the inference of clade defining mutations. Discussion Our approach is implemented as a python package with code available at https://github.com/flu-crew/classLog .

Zeller, Michael A.↗