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At least 559 records · Page 31

Using XR for Improving Scientific Discovery With Numerical Weather Models

Earth science (ES) digital twins will help us understand the complex interactions and interrelationships that make up our Earth system and the impacts of earth science phenomena on it. Our work addresses two underdeveloped areas in current ES digital twin work: improving the understanding and interaction with ES model outputs by using Virtual and Mixed Reality (XR) tools and improving the non-intuitive mapping of continuous ES natural phenomena to gridded reference frames in current numerical models. Traditionally, scientists working on ES view and analyze the results of calculated or measured observables with static 1-dimensional (1D), 2D or 3D plots displayed on flat computer screens or paper. Using such limited mediums, it can be very difficult to identify, track and understand the evolution of key features due to poor viewing angles and the nature of flat computer screens. In addition, numerical models, such as the NASA Goddard Earth Observing System (GEOS) ES model, are almost exclusively formulated, visualized and analyzed in an Eulerian reference frame with fixed grid points in space and time. However, ES phenomena such as convective clouds, hurricanes and wildfire smoke plumes are visualized and analyzed in a Lagrangian reference frame: therefore it is often difficult and unnatural to understand these phenomena in relation to each other, visualized either in an Eulerian or Lagrangian context. In 3D visualizations, data generally takes one of three forms: gridded (e.g., voxelized) data, where space is divided into regions; point clouds, where data is represented as a set of points; and meshes, where objects are rendered as surfaces composed of small polygons (usually triangles). A gridded, Eulerian reference frame has been the default representation for the 2D visual analysis of atmospheric data in part because the numerical methods used to generate atmospheric model data in the first place use a gridded approach, with equations defining the relationships between the physical variables in each of a grid's cells across successive timesteps. In our work, we are particularly interested in data from GEOS. Another reason why gridded representations tend to be used for visualizing data from such models is because trajectories are difficult to interpret from representations on 2D surfaces, due to line-of-sight ambiguity. Instead of a fixed grid from GEOS, we embed a trajectory model to simulate particles' movement throughout a GEOS run. We then ingest these particle trajectories as animated point clouds with a NASA open source XR toolkit, the Mixed Reality Exploration Toolkit (MRET), and merge GEOS data with ES phenomena data onto one combined visualization that the user can intuitively interact with. Efficient rendering of arbitrarily large point clouds is an ongoing challenge being addressed by the computer science community, with the GPU-based optimizations and efficient GPU memory utilization a common theme of recent advances, especially for XR, where sustained high frame rate is mandatory to save the user from suffering due to simulation sickness. In this work, we describe and evaluate our progress in choosing and implementing appropriate methods for rendering arbitrarily large point clouds within MRET for XR. While tracking the XR headset enables the immersion of a user within a 3D scene of a data visualization, tracking of XR handheld controllers or user’s hands enables us to implement intuitive user interactions with the visualized datasets. Conventional tools require a user working with an ES visualization to conduct many interactions to commit their intended selections or manipulations with a visualized dataset; for example to specify a set of points in 3D space. Doing so in a 2D flat screen interface has traditionally required specifying a set of points in three distinct 2D coordinate systems (XY, XZ, and YZ), which is cumbersome. In other scientific domains, it has been shown that specifying or selecting a location or volume in XR using handheld controllers or tracked hands allows for greater speed and accuracy. We anticipate the same will hold true for atmospheric data, and we will share initial results of measuring the utility of such an interface. Notably, as the data being visualized is generated by GEOS as a prediction based on initial conditions, an intended application of our tool is to serve as part of an iterative feedback loop. Through XR, a scientist will review and manipulate a GEOS model run, modifying the conditions as needed to do subsequent runs of GEOS. Thereby, XR-based improvements to speed and accuracy of 3D tagging of points minimizes the effort required by both the scientist and the computer cluster conducting the necessary calculations.

Thomas Grubb↗

Automating Microbial Directed Evolution For Bioengineering Applications

From a micro-biology perspective, directed evolution is a technique that uses controlled environmental pressures to select for a desired phenotype. Directed evolution has the distinct advantage over rational design of not needing extensive knowledge of the genome or pathways associated with a microorganism to induce phenotypes. However, there are currently limitations to the applicability of this technique including being time-consuming, error-prone, and dependent on existing assays that may lack selectivity for the given phenotype. The AADEC (Autonomous Adaptive Directed Evolution Chamber) system is a proof-of-concept instrument to automate and improve the technique such that directed evolution can be used more effectively as a general bioengineering tool. A series of tests using the automated system and comparable by-hand survival assay measurements have been carried out using UV-C radiation and Escherichia coli cultures in order to demonstrate the advantages of the AADEC versus traditional implementations of directed evolution such as random mutagenesis. AADEC uses UV-C exposure as both a source of environmental stress and mutagenesis, so in order to evaluate the UV-C tolerance obtained from the cultures, a manual UV-C exposure survival assay was developed alongside the device to compare the survival fractions at a fixed dosage. This survival assay involves exposing E. coli to UV-C radiation using a custom-designed exposure hood to control the flux and dose. Surviving cells are counted then transferred to the next iteration and so on for several iterations to calculate the survival fractions for each exposure iteration.This survival assay primarily serves as a baseline for the AADEC device, allowing quantification of the differences between the AADEC system over the manual approach. The primary data of comparison is survival fractions; this is obtained by optical density and plate counts in the manual assay and by optical density growth curve fits pre- and post-exposure in the automated case. This data can then be compiled to calculate trends over the iterations to characterize increasing UV-C resistance of the E.coli strains. The observed trends are statistically indistinguishable through several iterations from both sources.

Bioengineering↗

An open source knowledge graph ecosystem for the life sciences

Translational research requires data at multiple scales of biological organization. Advancements in sequencing and multi-omics technologies have increased the availability of these data, but researchers face significant integration challenges. Knowledge graphs (KGs) are used to model complex phenomena, and methods exist to construct them automatically. However, tackling complex biomedical integration problems requires flexibility in the way knowledge is modeled. Moreover, existing KG construction methods provide robust tooling at the cost of fixed or limited choices among knowledge representation models. PheKnowLator (Phenotype Knowledge Translator) is a semantic ecosystem for automating the FAIR (Findable, Accessible, Interoperable, and Reusable) construction of ontologically grounded KGs with fully customizable knowledge representation. The ecosystem includes KG construction resources (e.g., data preparation APIs), analysis tools (e.g., SPARQL endpoint resources and abstraction algorithms), and benchmarks (e.g., prebuilt KGs). We evaluated the ecosystem by systematically comparing it to existing open-source KG construction methods and by analyzing its computational performance when used to construct 12 different large-scale KGs. With flexible knowledge representation, PheKnowLator enables fully customizable KGs without compromising performance or usability.

96 KNOWLEDGE MANAGEMENT AND PRESERVATION↗

Quantitative investigation of sooting dynamics in droplet combustion using an automated image analysis algorithm

This paper reports an image analysis approach using a newly-developed open-source program to extract quantitative measurements of soot volume fraction (SVF) from digital video images of burning n-heptane droplets. The automated program developed in this work can analyze images of fixed and untethered droplets to quantify sooting dynamics. The images analyzed in the program were taken from experiments carried out in the Multi-user Droplet Combustion Apparatus (MDCA) onboard the International Space Station (ISS). In these experiments, video imaging of burning droplets was obtained using backlighting by a laser diode with a wavelength of 653 nm. Here, the light was collimated before it passed through the droplet and soot-containing region, after which the light was then attenuated and projected onto the camera’s sensors. This technique facilitates the measurements of SVF based on the principles of the full field light extinction method (FFLEM). The measurements provide quantitative data that reveal the sooting dynamics of liquid fuels during droplet combustion processes. The analyses of a soot-attenuating image (ISS n-heptane, untethered droplet) at an instant during the burning show that the SVF distribution has a peak at the soot shell location. It then decreases due to soot oxidation when the location is further away from the burning droplet. Regarding temporal effects on the maximum SVF (SVF max ), results show that SVF max first increases after the burning is initiated until a peak value is reached, after which SVF max decreases. The SVF max values identified in this study for n-heptane are quantitatively consistent with previously reported values for fiber-supported droplets and are reached relatively early in the burning history. n-Heptane images are also analyzed to show the effects of initial droplet sizes on the maximum soot volume fraction. Results show that SVF max decreases with increasing initial droplet size, which is consistent with visual observations of less soot formed and dimmer flame brightness as Do increases.

42 ENGINEERING↗

Modeling diffusion and depletion in high-aspect-ratio atomic layer deposition processes: Process parameters and manufacturing impacts

Atomic layer deposition (ALD) is a powerful technique for modifying the surface chemistry and properties of substrates with complex and nonplanar topologies. However, achieving uniform and conformal deposition on ultrahigh-aspect-ratio substrates remains challenging, typically requiring large quantities of precursors and long exposure times. Furthermore, process optimization is often performed empirically and involves substantial trial and error. In this work, we perform a combined experimental and computational study of ALD Al 2 O 3 infiltration into silica aerogel monoliths (aspect ratio >10 5 ). A reaction-diffusion model is used to explore the effects of key processing parameters, namely, exposure time per dose, precursor source temperature, number of aerogels in the reactor, and reactor volume. The model is based on quasi-static mode ALD, where the dosed precursor is held in the chamber for a fixed period of time before purging. We analyze the trade-offs between process throughput and precursor utilization for each of these parameters. Furthermore, we investigate the co-optimization and interactions between multiple process parameters, demonstrating the potential for further improvements. Furthermore, this physics-based model can be used to identify a set of process parameters for high-aspect-ratio ALD that meet specific manufacturing objective functions, including throughput, cost, and sustainability.

Aerogel↗

Analysis of FRAM Measurements to Establish Methodology Uncertainty

Qualification measurements were performed at Oak Ridge National Laboratory (ORNL) on a variety of measurement standards. These measurements will be used to qualify the Fixed-Energy, Response Function Analysis with Multiple Efficiency (FRAM) code with a high purity germanium (HPGe) detector for use at ORNL. Measured items include uranium isotopic standards, U 3 O 8 line sources, and a uranium tetrafluoride source. The 235 U enrichment was estimated using the FRAM isotopic analysis software for each source and compared with the declared isotopic values.

46 INSTRUMENTATION RELATED TO NUCLEAR SCIENCE AND ↗

Resolving the Discontinuity Between Thermal Scattering Data and Fast Data

The task of resolving discontinuities between thermal cross sections and fast cross sections in AMPX processing is part of a broader project to provide guidance on the potential effect of unknown thermal neutron scattering law (TNSL) data, primarily from the standpoint of criticality safety. The primary goal of this work is to deliver code fixes in AMPX that increase confidence that SCALE libraries provide physically correct cross sections across the full range of neutron energies encountered in transport applications. This report discusses the resolution of two sources of discontinuity. The first issue occurs when the Bragg edges in an evaluated nuclear data file do not extend to 5 eV. The second issue concerns parameters chosen during the processing of the nuclear data library—specifically, the parameter that defines the energy at which the thermal data ends and the fast nuclide data begins. This report also discusses a third issue, which is related to the calculation of probability distributions from a densely gridded double-differential cross section.

73 NUCLEAR PHYSICS AND RADIATION PHYSICS↗

Precise micromotion compensation of a tilted ion chain

Excess micromotion can be a substantial source of errors in trapped-ion based quantum processors and clocks due to the sensitivity of the internal states of the ion to external fields and motion. This problem can be fixed by compensating background electric fields in order to position ions at the RF node and minimize their driven micromotion. Here we describe techniques for compensating ion chains in scalable surface ion traps. These traps are capable of cancelling stray electric fields with fine spatial resolution in order to compensate multiple closely spaced ions due to their large number of relatively small control electrodes. We demonstrate a technique that compensates an ion chain to better than 5 V/m and within 0.1 degrees of chain rotation.

71 CLASSICAL AND QUANTUM MECHANICS, GENERAL PHYSIC↗

Transparent sound screens

Transparent sound screens consisting of glass (organic glass) plates placed at fixed angles with respect to the floor are considered. Noise levels in the screened area depend on the cumulative effect of direct, reverberated and refracted components of sound energy radiated by the source. This effect is analyzed on the analogy of the summation of electrical impedances. Inasmuch as under given circumstances sufficient noise control can be obtained, transparent screens seem to solve the problem of unimpeded supervision of installations in noisy workshops and power plants; in administrative buildings, computing centers, design bureaus, etc., they ensure acoustic comfort without space losses and without inspiring claustrophobia.

Bizo, F.↗

Dynamics of early planetary gear trains

A method to analyze the static and dynamic loads in a planetary gear train was developed. A variable-variable mesh stiffness (VVMS) model was used to simulate the external and internal spur gear mesh behavior, and an equivalent conventional gear train concept was adapted for the dynamic studies. The analysis can be applied either involute or noninvolute spur gearing. By utilizing the equivalent gear train concept, the developed method may be extended for use for all types of epicyclic gearing. The method is incorporated into a computer program so that the static and dynamic behavior of individual components can be examined. Items considered in the analysis are: (1) static and dynamic load sharing among the planets; (2) floating or fixed Sun gear; (3) actual tooth geometry, including errors and modifications; (4) positioning errors of the planet gears; (5) torque variations due to noninvolute gear action. A mathematical model comprised of power source, load, and planetary transmission is used to determine the instantaneous loads to which the components are subjected. It considers fluctuating output torque, elastic behavior in the system, and loss of contact between gear teeth. The dynamic model has nine degrees of freedom resulting in a set of simultaneous second order differential equations with time varying coefficients, which are solved numerically. The computer program was used to determine the effect of manufacturing errors, damping and component stiffness, and transmitted load on dynamic behavior. It is indicated that this methodology offers the designer/analyst a comprehensive tool with which planetary drives may be quickly and effectively evaluated.

August, R.↗

Noise constraints effecting optimal propeller designs

A preliminary design tool for advanced propellers was developed combining a fast vortex lattice aerodynamic analysis, a fast subsonic point source noise analysis, and an optimization scheme using a conjugate directions method. Twist, chord and sweep distributions are optimized to simultaneously improve both the aerodynamic performance and the noise observed at a fixed relative position. The optimal noise/performance tradeoffs for straight and advanced concept blades are presented. The techniques used include increasing the blade number, blade sweep, reducing the rotational speed, shifting the spanwise loading and diameter changes.

Miller, C. J.↗

Noise constraints effecting optimal propeller designs

A preliminary design tool for advanced propellers was developed combining a fast vortex lattice aerodynamic analysis, a fast subsonic point source noise analysis, and an optimization scheme using a conjugate directions method. Twist, chord and sweep distributions are optimized to simultaneously improve both the aerodynamic performance and the noise observed at a fixed relative position. The optimal noise/performance tradeoffs for straight and advanced concept blades are presented. The techniques used include increasing the blade number, blade sweep, reducing the rotational speed, shifting the spanwise loading and diameter changes.

Miller, C. J.↗

Propagation of Light Elements in the Galaxy

The origin and evolution of isotopes of the lightest elements d, He-3, Li, Be, and B in the universe is a key problem in such fields as astrophysics of CR, Galactic evolution, non-thermal nucleosynthesis, and cosmological studies. One of the major sources of these species is spallation by CR nuclei in the interstellar medium. On the other hand, it is the Boron/Carbon ratio in CR and Be-10 abundance which are used to fix the propagation parameters and thus spallation rate. We study production and Galactic propagation of these species using the numerical propagation code GALPROP and updated production cross sections.

Moskalenko, I. V.↗

Project Report: Reducing Color Rivalry in Imagery for Conjugated Multiple Bandpass Filter Based Stereo Endoscopy

A pair of conjugated multiple bandpass filters (CMBF) can be used to create spatially separated pupils in a traditional lens and imaging sensor system allowing for the passive capture of stereo video. This method is especially useful for surgical endoscopy where smaller cameras are needed to provide ample room for manipulating tools while also granting improved visualizations of scene depth. The significant issue in this process is that, due to the complimentary nature of the filters, the colors seen through each filter do not match each other, and also differ from colors as seen under a white illumination source. A color correction model was implemented that included optimized filter selection, such that the degree of necessary post-processing correction was minimized, and a chromatic adaptation transformation that attempted to fix the imaged colors tristimulus indices based on the principle of color constancy. Due to fabrication constraints, only dual bandpass filters were feasible. The theoretical average color error after correction between these filters was still above the fusion limit meaning that rivalry conditions are possible during viewing. This error can be minimized further by designing the filters for a subset of colors corresponding to specific working environments.

conjugated multiple bandpass filters (CMBF)↗

Temperature and abundances in the Jovian auroral stratosphere. 1: Ethane as a probe of the millibar region

We report infrared heterodyne spectroscopy (lambda/delta lambda is approximately 10(exp 6)) of C2H6 emission at 11.9 microns from the northern Jovian auroral region, in observations conducted over December 2-7, 1989. Accurately measured line shapes provide information on C2H6 abundance as well as temperature and permit retrieval of the source pressure region. Enhanced emission was observed in the longitude range approximately 150-180 deg at approximately 60 deg north latitude, approximately corresponding to the CH4 7.8 micron hot spot and the region of brightest UV aurora. Significant brightness variations were observed in the hot spot emissions on a time scale of approximately 20 hours. Analysis of the brightest hot spot spectra indicates C2H6 mole fractions of approximately (6.3-6.8) x 10(exp -6) at temperatures of approximately 182-184 K at 1 mbar, compared to mole fractions of (3.8 +/- 1.4) x 10(exp -6) averaged over spectra outside the hot spot at a temperature of approximately 172 K at the same pressure. Fixing the mole fraction to the lower limit retrieved in the quiescent (non-hot spot) region allows the temperature at 1 mbar to be as high as approximately 200 K within the hot spot. These results provide upper limits to the temperature increase near the source of the C2H6 thermal infrared emission. Combined with results from similar measurements of ethylene emission probing the approximately 10-microbar region (Kostiuk et al., this issue), altitude information on the thermal structure of the Jovian auroral stratosphere can be obtained for the first time.

Livengood, Timothy A.↗

Exponential concentration in quantum kernel methods

Kernel methods in Quantum Machine Learning (QML) have recently gained significant attention as a potential candidate for achieving a quantum advantage in data analysis. Among other attractive properties, when training a kernel-based model one is guaranteed to find the optimal model’s parameters due to the convexity of the training landscape. However, this is based on the assumption that the quantum kernel can be efficiently obtained from quantum hardware. In this work we study the performance of quantum kernel models from the perspective of the resources needed to accurately estimate kernel values. We show that, under certain conditions, values of quantum kernels over different input data can be exponentially concentrated (in the number of qubits) towards some fixed value. Thus on training with a polynomial number of measurements, one ends up with a trivial model where the predictions on unseen inputs are independent of the input data. We identify four sources that can lead to concentration including expressivity of data embedding, global measurements, entanglement and noise. For each source, an associated concentration bound of quantum kernels is analytically derived. Lastly, we show that when dealing with classical data, training a parametrized data embedding with a kernel alignment method is also susceptible to exponential concentration. Our results are verified through numerical simulations for several QML tasks. Altogether, we provide guidelines indicating that certain features should be avoided to ensure the efficient evaluation of quantum kernels and so the performance of quantum kernel methods.

97 MATHEMATICS AND COMPUTING↗

Polarization transmission in the Hadron Storage Ring of the Electron-Ion Collider

The successful operation of the future Electron-Ion Collider is contingent on maintaining high hadron beam polarization up to 275 GeV. The Hadron Storage Ring lattice, however, features a symmetry-breaking interaction region that excites strong, nonsystematic spin resonances, posing a significant threat to polarization preservation. This paper systematically investigates two complementary strategies to ensure high polarization transmission. The first method involves optimizing the vertical betatron phase advance between Siberian snakes to orchestrate a cancellation of depolarizing kicks across the ring. We demonstrate through simulations that both dynamic and fixed-optics solutions based on this principle can successfully preserve polarization through the strongest resonances. The second, more powerful approach involves optimizing the snake rotation axes to suppress resonance driving terms at their source. We revisit established symmetric configurations, such as the Lee-Courant schemes, and introduce a novel, highly symmetric “Doubly Lee-Courant” (DLC) scheme, which enforces a local 𝜋 spin phase advance across every consecutive pair of snakes. Our analysis reveals a clear performance hierarchy, with the DLC configuration providing an exceptionally robust and energy-insensitive baseline for polarization preservation. We conclude that a hybrid strategy, using a DLC snake scheme as a symmetric foundation and betatron phase tuning for fine corrections, offers the most effective path forward for the EIC and future high-energy polarized-beam facilities.

73 NUCLEAR PHYSICS AND RADIATION PHYSICS↗

Inference of Multichannel r -process Element Enrichment in the Milky Way Using Binary Neutron Star Merger Observations

Observations of GW170817 strongly suggest that binary neutron star (BNS) mergers produce rapid neutron-capture nucleosynthesis ( r -process) elements. However, it remains an open question whether these mergers can account for all the r -process element enrichment in the Milky Way’s history. Here, we constrain the contributions of the BNS channel using astrophysical neutron star observations. The rate and mass distributions are constrained by LIGO/Virgo/Kagra through the latest catalog GWTC-3, the neutron star equation of state by gravitational-wave, radio, and X-ray observations, and the delay time distribution by short gamma-ray burst (GRB) host galaxy associations. We present a Bayesian framework to consistently combine these observations with abundance information to quantify the contribution and uncertainties of single and multiple astrophysical enrichment sources, and obtain a distribution of per-event BNS r -process element yields consistent with geophysical and astrophysical abundance constraints. We then adopt a Galactic chemical evolution model assuming an instantaneous and fixed amount of Fe enrichment from core-collapse supernovae, and show that BNS-only enrichment scenarios remain inconsistent with the observed r-process abundance trend of disk stars in the Galaxy even with the uncertainties in BNS merger observations. Using stellar abundance observations instead of the short GRB constraints, we can infer a shorter BNS delay time distribution with power-law index α ≤ −2.0 and minimum delay time ${t}_{{\rm{\min }}}\leqslant 40$ Myr at 90% confidence, consistent with detailed Galactic chemical evolution models. Such delay times are in tension with those predicted by standard BNS formation models. Alternatively, we confirm that a two-channel scenario, in which the second channel tracks the star formation history without significant delay, can account for both Galactic stellar and short GRB observations. We estimate that 45%–90% of the r -process abundance in the Milky Way today would have been produced by this star formation-tracking channel, rather than BNS mergers with significant delay times.

gravitational wave astronomy↗