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Search indexed NASA NTRS and DOE OSTI research on propulsion, heat transfer, battery materials and energy systems. Follow report and document links to the original sources.

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All sourcesNASA NTRSDOE OSTI
DOE OSTI2021

Graph convolutional networks applied to unstructured flow field data

Abstract Many scientific and engineering processes produce spatially unstructured data. However, most data-driven models require a feature matrix that enforces both a set number and order of features for each sample. They thus cannot be easily constructed for an unstructured dataset. Therefore, a graph based data-driven model to perform inference on fields defined on an unstructured mesh, using a graph convolutional neural network (GCNN) is presented. The ability of the method to predict global properties from spatially irregular measurements with high accuracy is demonstrated by predicting the drag force associated with laminar flow around airfoils from scattered velocity measurements. The network can infer from field samples at different resolutions, and is invariant to the order in which the measurements within each sample are presented. The GCNN method, using inductive convolutional layers and adaptive pooling, is able to predict this quantity with a validation R 2 above 0.98, and a Normalized Mean Squared Error below 0.01, without relying on spatial structure.

Ogoke, Francis (ORCID:0000000224327783)↗
DOE OSTI2024

GalaxyFlow: upsampling hydrodynamical simulations for realistic mock stellar catalogues

ABSTRACT Cosmological N-body simulations of galaxies operate at the level of ‘star particles’ with a mass resolution on the scale of thousands of solar masses. Turning these simulations into stellar mock catalogues requires ‘upsampling’ the star particles into individual stars following the same phase-space density. In this paper, we introduce two new upsampling methods. First, we describe GalaxyFlow, a sophisticated upsampling method that utilizes normalizing flows to both estimate the stellar phase-space density and sample from it. Secondly, we improve on existing upsamplers based on adaptive kernel density estimation (KDE), using maximum likelihood estimation to fine-tune the bandwidth for such algorithms in a way that improves both the density estimation accuracy and upsampling results. We demonstrate our upsampling techniques on a neighbourhood of the Solar location in two simulated galaxies: Auriga 6 and h277. Both yield smooth stellar distributions that closely resemble the stellar densities seen in the Gaia DR3 catalogue. Furthermore, we introduce a novel multimodel classifier test to compare the accuracy of different upsampling methods quantitatively. This test confirms that GalaxyFlow more accurately estimates the density of the underlying star particles than methods based on KDE, at the cost of being more computationally intensive.

Lim, Sung Hak (ORCID:0000000330981092)↗
DOE OSTI2016

Giant clumps in simulated high- z Galaxies: properties, evolution and dependence on feedback

Here, we study the evolution and properties of giant clumps in high- z disc galaxies using adaptive mesh refinement cosmological simulations at redshifts z ∼ 6–1. Our sample consists of 34 galaxies, of halo masses 10 11 –10 12 M⊙ at z = 2, run with and without radiation pressure (RP) feedback from young stars. While RP has little effect on the sizes and global stability of discs, it reduces the amount of star-forming gas by a factor of ∼2, leading to a similar decrease in stellar mass by z ∼ 2. Both samples undergo extended periods of violent disc instability continuously forming giant clumps of masses 10 7 –10 9 M ⊙ at a similar rate, though RP significantly reduces the number of long-lived clumps (LLCs). When RP is (not) included, clumps with circular velocity ≲ 40 (20) km s -1 , baryonic surface density ≲ 200 (100)M ⊙ pc -2 and baryonic mass ≲ 10 8.2 (10 7.3 ) M ⊙ are short-lived, disrupted in a few free-fall times. More massive and dense clumps survive and migrate towards the disc centre over a few disc orbital times. In the RP simulations, the distribution of clump masses and star formation rates (SFRs) normalized to their host disc is similar at all redshifts, exhibiting a truncated power law with a slope slightly shallower than -2. The specific SFR (sSFR) of the LLCs declines with age as they migrate towards the disc centre, producing gradients in mass, stellar age, gas fraction, sSFR and metallicity that distinguish them from the short-lived clumps which tend to populate the outer disc. Ex situ mergers comprise ~37 percent of the mass in clumps and ~29 percent of the SFR. They are more massive and with older stellar ages than the in situ clumps, especially near the disc edge. Lastly, roughly half the galaxies at redshifts z = 4–1 are clumpy, with ~3–30 percent of their SFR and ~0.1–3 percent of their stellar mass in clumps.

79 ASTRONOMY AND ASTROPHYSICS↗
DOE OSTI2014

TU-F-18C-03: X-Ray Scatter Correction in Breast CT: Advances and Patient Testing

Purpose: To further develop and perform patient testing of an x-ray scatter correction algorithm for dedicated breast computed tomography (BCT). Methods: A previously proposed algorithm for x-ray scatter signal reduction in BCT imaging was modified and tested with a phantom and on patients. A wireless electronic positioner system was designed and added to the BCT system that positions a tungsten plate in and out of the x-ray beam. The interpolation used by the algorithm was replaced with a radial basis function-based algorithm, with automated exclusion of non-valid sampled points due to patient motion or other factors. A 3D adaptive noise reduction filter was also introduced to reduce the impact of scatter quantum noise post-reconstruction. The impact on image quality of the improved algorithm was evaluated using a breast phantom and seven patient breasts, using quantitative metrics such signal difference (SD) and signal difference-to-noise ratios (SDNR) and qualitatively using image profiles. Results: The improvements in the algorithm resulted in a more robust interpolation step, with no introduction of image artifacts, especially at the imaged object boundaries, which was an issue in the previous implementation. Qualitative evaluation of the reconstructed slices and corresponding profiles show excellent homogeneity of both the background and the higher density features throughout the whole imaged object, as well as increased accuracy in the Hounsfield Units (HU) values of the tissues. Profiles also demonstrate substantial increase in both SD and SDNR between glandular and adipose regions compared to both the uncorrected and system-corrected images. Conclusion: The improved scatter correction algorithm can be reliably used during patient BCT acquisitions with no introduction of artifacts, resulting in substantial improvement in image quality. Its impact on actual clinical performance needs to be evaluated in the future. Research Agreement, Koning Corp., Hologic Inc., Barco Corp Consultant Agreement, Fujifilm Medical Systems.

60 APPLIED LIFE SCIENCES↗
DOE OSTI2019

Cloud Condensation Nuclei Particle Counter Instrument Handbook - Airborne Version

The cloud condensation nuclei counter (CCN) is a U.S. Department of Energy (DOE) Atmospheric Radiation Measurement (ARM) user facility instrument for measuring the concentration of aerosol particles that can act as cloud condensation nuclei. Note: ARM deploys both ground and airborne versions of this instrument. This handbook covers only the airborne instrument; the ground version is covered by DOE/SC-ARM-TR-168. The main differences between the two are that the airborne CCN operates at fixed supersaturation and adapts thermal efficiency calculation in the data process. The CCN draws sample aerosol through a column with thermodynamically unstable supersaturated water vapor that can condense onto aerosol particles. Particles that are activated, i.e., grown larger in this process, are counted (and sized) by an optical particle counter (OPC). Thus, activated ambient aerosol particle number concentration as a function of supersaturation is measured. Models CCN-100 and CCN- 200 differ only in the number of humidifier columns and related subsystems: CCN-100 has one column and CCN-200 has two columns along with dual flow systems and electronics.

54 ENVIRONMENTAL SCIENCES↗
DOE OSTI2024

High Throughput Genome Releaser

In this study, we present the development of a High Throughput Genome Releaser, an innovative device addressing common challenges in screening PCR. This genome DNA releaser is designed for rapid, cost-effective, and efficient DNA extraction, optimized for subsequent PCR reactions. Our experimentation with various synthetic materials led us to select a particular type of plastic that mirrors the properties of glass cover slides, providing a smooth surface and effective compression capabilities. We engineered a 96-well device equipped with a 96-well plate and a top rod, operable both manually and automatically, which is compatible with widely used liquid-handling robot decks. This compatibility enhances ease of use in high-throughput PCR setups. Additionally, we developed software to support its automatic functions. The genome releaser facilitates the extraction of PCR-amplifiable genomic DNA from 96 samples within minutes, eliminates the need for extraction buffers, and is adaptable to a wide range of microorganisms and cells. This versatility could significantly advance biomanufacturing processes.

42 ENGINEERING↗
DOE OSTI2025

An Innovative High Throughput Genome Releaser for Rapid and Efficient PCR Screening

High-throughput PCR screening is vital in synthetic biology and metabolic engineering as it allows researchers to rapidly analyze and detect numerous targeted genetic mutation in the genome. Current challenges for high-throughput PCR screening in synthetic biology include efficiently preparing genomic DNA, optimizing protocols for diverse sample types, managing contamination risks, and effectively analyzing the large volumes of data generated while ensuring consistent and accurate results. In this study, we present the development of a High Throughput Genome Releaser (HTGR), an innovative device addressing common challenges in screening PCR. This genome DNA releaser is designed based on a squash method for rapid, cost-effective, and efficient DNA release, optimized for subsequent PCR reactions. After experimenting with various synthetic materials, we selected a plastic that closely replicates the smooth surface and compression properties of microscope slides, ensuring reliable performance. We engineered a device featuring a 96-Well Plate and a shear applicator, operable both manually and automatically, and compatible with standard liquid-handling robot platform. This compatibility enhances ease of use in high-throughput PCR workflows. Additionally, we developed software to support its automatic functions. Our results demonstrated that the specially engineered 96-Well Plate and HTGR can effectively squash fungal spores , which release enough genome DNA for PCR screening. The genome releaser facilitates the preparation of PCR-amplifiable genomic DNA substrate from 96 samples within minutes, eliminates the need for extraction buffers, and is adaptable to a wide range of microorganisms and cells, which could significantly advance biomanufacturing processes.

Yuan, Guoliang [BATTELLE (PACIFIC NW LAB)]↗
NASA NTRS1972

ALLMAG, GDALMG, LINTRA: Computer programs for geomagnetic field and field-line calculations

A set of computer programs has been developed for the calculation of the geomagnetic field and the tracing of field lines in space. The basic subroutine, geocentric ALLMAG, contains coefficients for seven recently-published field models as built-in data statements. At execution time the user can vary the model and/or the time period by simply changing input parameters. Subroutine GDALMG is adapted for input and output in geodetic coordinates. ALLMAG and GDALMG are equivalent to Cain's FIELD and FIELDG, with the added flexibility of the choice of seven models. LINTRA traces field lines from any point in space to a specified altitude intersect in the same or opposite hemisphere, using any of the models contained in ALLMAG. Input is in either geocentric or geodetic coordinates, and output is returned in both. McIlwain's INVAR package, which calculates B and L, has been adapted to use ALLMAG. All programs are described in detail, and sample calculations are given.

Stassinopoulos, E. G.↗
NASA NTRS1971

A variable-step-size robust delta modulator.

Description of an analytically obtained optimum adaptive delta modulator-demodulator configuration. The device utilizes two past samples to obtain a step size which minimizes the mean square error for a Markov-Gaussian source. The optimum system is compared, using computer simulations, with a linear delta modulator and an enhanced Abate delta modulator. In addition, the performance is compared to the rate distortion bound for a Markov source. It is shown that the optimum delta modulator is neither quantization nor slope-overload limited. The highly nonlinear equations obtained for the optimum transmitter and receiver are approximated by piecewise-linear equations in order to obtain system equations which can be transformed into hardware. The derivation of the experimental system is presented.

Song, C. L.↗
NASA NTRS1979

Adaptable structural synthesis using advanced analysis and optimization coupled by a computer operating system

A finite element program is linked with a general purpose optimization program in a 'programing system' which includes user supplied codes that contain problem dependent formulations of the design variables, objective function and constraints. The result is a system adaptable to a wide spectrum of structural optimization problems. In a sample of numerical examples, the design variables are the cross-sectional dimensions and the parameters of overall shape geometry, constraints are applied to stresses, displacements, buckling and vibration characteristics, and structural mass is the objective function. Thin-walled, built-up structures and frameworks are included in the sample. Details of the system organization and characteristics of the component programs are given.

Sobieszczanski-Sobieski, J.↗
NASA NTRS1987

Fast Melting and Freezing for Microgravity Experiments

Commercial tube welders adapted to metallurgical research. Proposed furnace melts and resolidifies small metal samples during brief periods. In furnace, sample surrounded by large heat sinks and rapidly heated near midlength by intense source of heat. Furnace intended for use in experiments in microgravity: entire melting-and-freezing process requires less than 20 s of near weightlessness experienced in parabolic climb and dive of KC-135 airplane.

Poorman, Richard M.↗
NASA NTRS1990

Differential Sampling For Fast Acquisition Of Frequency

Algorithm rapidly estimates frequency of sinusoidal signal corrupted by zero-mean, additive, white Gaussian noise. Incorporates differential mathematical model of signal, cyclic sampling of signal, and least-squares best-estimate criterion. Adapts to changing signal frequency. Amount of computation required to obtain estimate increases only linearly with number of successive measurements processed.

Kumar, Rajendra↗
NASA NTRS1992

Effects of guar gum and cellulose on glucose absorption, hormonal release and hepatic metabolism in the pig

Six Large White pigs (mean body-weight 59 (SE 1.7) kg) were surgically fitted with permanent catheters in the portal vein, the brachiocephalic artery and the right hepatic vein, as well as with electromagnetic flow probes around the portal vein and the hepatic artery, and allowed to recover. The non-anaesthetized animals were given a basal non-fibre diet (diet A) alone or together with 60 g guar gum/kg (diet B) or 150 g purified cellulose/kg (diet C) by substitution for mica. The diets were given for weekly periods and according to a replicated 3 x 3 Latin square design. On the last day of each such adaptation period, test meals of 800 g were given before blood sampling. Sampling was continued for 8 h. Guar gum strongly reduced glucose apparent absorption without changing the absorption and the hepatic uptake profiles. Production rates of insulin, gastric inhibitory polypeptide and insulin-like growth factor-1 (IGF-1) were lowest after guar gum ingestion. However, the reductions in peripheral blood insulin levels caused by guar gum were not associated with a change in hepatic insulin extraction. IGF-1 appeared to be strongly secreted by the gut, whereas the liver had a net uptake of the peptide. Ingestion of guar gum increased the hepatic extraction coefficient of gut-produced IGF-1. Guar gum ingestion appeared also to decrease glucagon secretion. Cellulose at the level consumed had very few effects on the variables considered. It is suggested that the modulation of intestinal mechanisms by guar gum was sufficient to mediate the metabolic effects described.

Cellulose/administration & dosage↗
DOE OSTI2018

Superinfection and cure of infected cells as mechanisms for hepatitis C virus adaptation and persistence

Significance Viral populations exhibit an extraordinary ability to survive abrupt changes in host environment by rapidly generating adaptive mutations. However, our understanding of how viral populations respond to selection pressure and the underlying molecular mechanisms supporting viral adaptation in vivo is limited. Here, we report a set of clinical data sampled from subjects chronically infected by hepatitis C virus (HCV). The data show rapid expansion and turnover of drug-resistant viruses following treatment with an HCV protease inhibitor. By fitting mathematical models to the data, we propose that superinfection and cure of infected cells play critical roles in facilitating the rapid expansion and turnover of viral populations. Our results highlight the importance of considering intracellular viral competition in understanding rapid viral adaptation.

59 BASIC BIOLOGICAL SCIENCES↗
NASA NTRS2012

Background Noise Reduction Using Adaptive Noise Cancellation Determined by the Cross-Correlation

Background noise due to flow in wind tunnels contaminates desired data by decreasing the Signal-to-Noise Ratio. The use of Adaptive Noise Cancellation to remove background noise at measurement microphones is compromised when the reference sensor measures both background and desired noise. The technique proposed modifies the classical processing configuration based on the cross-correlation between the reference and primary microphone. Background noise attenuation is achieved using a cross-correlation sample width that encompasses only the background noise and a matched delay for the adaptive processing. A present limitation of the method is that a minimum time delay between the background noise and desired signal must exist in order for the correlated parts of the desired signal to be separated from the background noise in the crosscorrelation. A simulation yields primary signal recovery which can be predicted from the coherence of the background noise between the channels. Results are compared with two existing methods.

Spalt, Taylor B.↗
DOE OSTI2014

Development and evaluation of a device for simultaneous uniaxial compression and optical imaging of cartilage samples in vitro

In this paper, we present a system that allows imaging of cartilage tissue via optical coherence tomography (OCT) during controlled uniaxial unconfined compression of cylindrical osteochondral cores in vitro. We describe the system design and conduct a static and dynamic performance analysis. While reference measurements yield a full scale maximum deviation of 0.14% in displacement, force can be measured with a full scale standard deviation of 1.4%. The dynamic performance evaluation indicates a high accuracy in force controlled mode up to 25 Hz, but it also reveals a strong effect of variance of sample mechanical properties on the tracking performance under displacement control. In order to counterbalance these disturbances, an adaptive feed forward approach was applied which finally resulted in an improved displacement tracking accuracy up to 3 Hz. A built-in imaging probe allows on-line monitoring of the sample via OCT while being loaded in the cultivation chamber. We show that cartilage topology and defects in the tissue can be observed and demonstrate the visualization of the compression process during static mechanical loading.

46 INSTRUMENTATION RELATED TO NUCLEAR SCIENCE AND ↗