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At least 55 records · Page 3

Parametric Amplification of High-Frequency Radiation by Point Josephson Junctions Near Shapiro Subharmonic Steps

Parametric amplification of a high-frequency radiation by point-like Josephson junctions in the cavity has been studied within a resistive model. It is shown numerically and analytically that near the subharmonic steps of the current–voltage characteristic there are areas of amplification of electromagnetic radiation. An one-dimensional array of the Josephson point junctions connected in series is treated. It is shown that the junctions in the array near the subharmonic steps of current–voltage characteristic are nonsynchronized and, accordingly, the amplification regions near the subharmonic steps of the array are missing.

75 CONDENSED MATTER PHYSICS, SUPERCONDUCTIVITY AND↗

Monsoon Depression Amplification by Horizontal Shear and Humidity Gradients: A Shallow Water Perspective

Transient, synoptic-scale vortices produce a large fraction of total rainfall in most monsoon regions and are often associated with extreme precipitation. However, the mechanism of their amplification remains a topic of active research. For monsoon depressions, which are the most prominent synoptic-scale vortex in the Asian–Australian monsoon, recent work has suggested that meridional gradients in zonal wind in the vortex environment may produce growth through barotropic instability, while meridional gradients in environmental humidity have also been proposed to cause amplification through coupling with precipitating convection. Here, a two-dimensional shallow water model on a sphere with parameterized precipitation is used to examine the relative role played by these two environmental gradients. By systematically varying the meridional moisture gradient and meridional wind shear for both weak, quasi-linear waves and finite-amplitude isolated vortices, we show that rotational winds in the initial vortex are amplified most strongly by meridional shear of the environmental zonal wind, while vortex precipitation rates are most sensitive to environmental moisture gradients. The growth rate in the presence of both gradients is less than the sum of growth rates in the presence of isolated gradients, as the phase relation between moisture and vorticity anomalies becomes distorted with increasing shear. In conclusion, these results suggest that background meridional gradients in both zonal wind and environmental humidity can contribute to the amplification of vortices to monsoon depression strength, but with some degree of decoupling of the dry rotational flow and the moist convection.

54 ENVIRONMENTAL SCIENCES↗

Fluorescent amplification for next generation sequencing (FA-NGS) library preparation

BACKGROUND: Next generation sequencing (NGS) has become a universal practice in modern molecular biology. As the throughput of sequencing experiments increases, the preparation of conventional multiplexed libraries becomes more labor intensive. Conventional library preparation typically requires quality control (QC) testing for individual libraries such as amplification success evaluation and quantification, none of which occur until the end of the library preparation process. RESULTS: In this study, we address the need for a more streamlined high-throughput NGS workflow by tethering real-time quantitative PCR (qPCR) to conventional workflows to save time and implement single tube and single reagent QC. We modified two distinct library preparation workflows by replacing PCR and quantification with qPCR using SYBR Green I. qPCR enabled individual library quantification for pooling in a single tube without the need for additional reagents. Additionally, a melting curve analysis was implemented as an intermediate QC test to confirm successful amplification. Sequencing analysis showed comparable percent reads for each indexed library, demonstrating that pooling calculations based on qPCR allow for an even representation of sequencing reads. To aid the modified workflow, a software toolkit was developed and used to generate pooling instructions and analyze qPCR and melting curve data. CONCLUSIONS: We successfully applied fluorescent amplification for next generation sequencing (FA-NGS) library preparation to both plasmids and bacterial genomes. As a result of using qPCR for quantification and proceeding directly to library pooling, the modified library preparation workflow has fewer overall steps. Therefore, we speculate that the FA-NGS workflow has less risk of user error. The melting curve analysis provides the necessary QC test to identify and troubleshoot library failures prior to sequencing. While this study demonstrates the value of FA-NGS for plasmid or gDNA libraries, we speculate that its versatility could lead to successful application across other library types.

59 BASIC BIOLOGICAL SCIENCES↗

Optical parametric amplification of spectrally incoherent pulses

The optical parametric amplification of spectrally incoherent signals is analyzed and simulated using a set of normalized equations describing phase-matched three-wave nonlinear mixing. Varying the amplifier’s properties and the seeding conditions reveals different amplification regimes. In particular, the relative temporal walk-off of the signal, idler, and pump has a strong impact on the temporal and spectral properties of the amplified signal. The amplification efficiency for spectrally incoherent signals is not significantly lower than that of a coherent monochromatic signal, provided that the phase-matching bandwidth is sufficient. Here, the results obtained with the normalized set of equations are in good agreement with simulations based on the full description of the crystals’ dispersion for high-gain LBO and BBO preamplifiers and a low-gain DKDP power amplifier.

47 OTHER INSTRUMENTATION↗

Nonlinear regenerative amplification using tunable intracavity cascaded quadratic nonlinearities

Conventional nonlinear regenerative amplification utilizes Kerr (i.e., self-focusing) nonlinearity to broaden the spectrum via self-phase modulation during the direct amplification of ultrashort pulses, which helps overcome spectral gain narrowing for high-energy, ultrashort-pulse generation. We introduce cascaded quadratic nonlinearities from a type-I second-harmonic generation crystal, which can be tuned in both magnitude and sign via the phase-mismatching condition, inside a regenerative amplifier to enable nonlinearity-tunable regenerative amplification. We demonstrate, both experimentally and numerically, a nonlinear Yb:YAG thin-disk regenerative amplifier with either positive or negative net nonlinearity that delivers 1-kHz, >0.4-mJ pulses as short as ∼200 fs and high-quality beams free of self-focusing. The laser’s average power can be scaled to >100 W when seeded and operated at a much higher repetition rate to benefit various applications.

47 OTHER INSTRUMENTATION↗

Investigation of Site Amplifications Using Ambient-Noise-Derived Shallow Velocity Structures Under a Dense Array in Oklahoma

The shear-wave velocity (V S ) structure plays an important role in characterizing site amplification. The Large-n Seismic Survey in Oklahoma (LASSO; 1820 stations) revealed large vertical ground-motion variability in a 25 km × 32 km area in northern Oklahoma. The LASSO array has a relatively simple and flat topography, typical in a sedimentary basin environment in the central United States. In this study, we use the dense array to investigate the velocity structure under the LASSO array and how vertical ground motions relate to the shallow-to-deep structures. We extract the fundamental-mode Rayleigh wave by cross-correlating one month of ambient noise (0.7–5 Hz). We use double-beamforming to measure the group and phase velocities and anisotropy. By jointly inverting the group and phase velocities, we obtain the V S structure. Here, we observe correlations between V S at depths of 0.1–1.5 km and vertical ground motions using sites on the stiffer Permian formations. The shallow Quaternary alluvium and terrace deposits can amplify vertical ground motions by a factor of 2–4.5 between 2 and 25 Hz and attenuate signals above 25 Hz. We use 1D V S profiles to simulate the SV-wave transfer functions. An average V S of 250 m/s in the upper 20–40 m may cause the observed amplification between 2 and 40 Hz. V S estimated by topographic slopes cannot predict the relative amplification. Our results highlight the large variability of site-dependent ground motion in a small local region and the importance of characterizing shallow structures to estimate seismic hazards. Small thickness variations of the shallow formation can significantly change the resonance amplitude and frequency, which likely reduces the coherency of the Rayleigh waves extracted from ambient noise.

Chang, Hilary [Massachusetts Inst. of Technology (↗

Effect of suspension-line viscous damping on parachute opening load amplification.

A digital computer program was used to investigate the effects of suspension-line viscous damping on the opening loads of a high-altitude parachute system having a specified configuration. It was found (1) that the nonlinear elastic characteristics of the suspension system produce an amplification of the opening load when the viscous damping is negligible, (2) that the load amplification is markedly reduced when the suspension-line viscous damping coefficient is increased, and (3) that the suspension-line viscous damping is an important parameter of opening load amplification for high-velocity parachute inflations.

Poole, L. R.↗

The effects of density gradients on the convective amplification of upper hybrid waves in the magnetosphere

Intense (at least 10 mV/m) electrostatic plasma waves have been detected near the upper hybrid frequency between + or -50 deg MLAT during recent GEOS-1 crossings. Wave growth rate and convective amplification calculations were carried out in order to explain the occurrence of intense upper hybrid (IUH) events over such a wide range of latitudes. The effects of wave refractions were taken into account in the convective amplification calculations. Specific results are presented for the upper hybrid wave growth of an IUH event occurring at 10 deg MLAT. It is shown that a density gradient may be necessary to explain the observed amplification at 10 deg MLAT. At the equator, however, the long scale length of the magnetic field gradient enables large amplitudes to be attained without a density gradient. The results of a UH ray tracing analysis are discussed within the framework of current theories concerning magnetospheric continuum radiation.

Engel, J.↗

Hot Raman amplification

A parameter regime is identified for Raman amplification at high temperatures, where deleterious laser–plasma instabilities that limit current amplification experiments are avoided, yet sufficient gain for an effective power amplifier is attained. Furthermore, calculations and kinetic simulations show that even at high temperatures, an amplifier is able to satisfy the criteria set forth to present a proof-of-principle system scalable to high powers, where energy transfer efficiencies are ≥30%, intensity gains are ≥10, and output intensities are ≥100× the pump intensity.

70 PLASMA PHYSICS AND FUSION TECHNOLOGY↗

Natural transformation as a tool in Acinetobacter baylyi : Evolution by amplification of gene copy number

For many years, the natural competency of Acinetobacter baylyi ADP1 facilitated studies of bacterial metabolism, biochemistry, and physiology. With the advent of synthetic biology, new opportunities arise to exploit the remarkable transformability and chromosomal plasticity of this model organism. In this chapter, we describe a recently developed method, “Evolution by Amplification and Synthetic Biology” (EASy). EASy allows the targeted amplification of chromosomal segments that give rise to new phenotypes. Increased gene dosage regulates protein expression in a rudimentary fashion by establishing a chromosomal array in which copy number adjusts via recombination between repeated DNA sequences. Selective conditions enrich for cells within the population that confer a growth advantage. Under continuous selective pressure, beneficial mutations may accumulate in any genomic region. Such mutations favor decreases in the average copy number of the target region. Thus, the genetic flexibility afforded by transient copy number variation helps accelerate the selection of engineered strains with desired traits during laboratory evolution. As a result, thanks to the extremely simple genetic manipulation of Acinetobacter baylyi ADP1, the EASy method can be readily implemented by researchers without the need for advanced instrumentation or complex cloning techniques.

59 BASIC BIOLOGICAL SCIENCES↗

Ytterbium laser system for studying parametric amplification of femtosecond pulses with a centre wavelength of ∼2 μm

A laser system is developed with an optical synchronisation of a femtosecond signal with a pump channel. The signal of a driving ytterbium fibre laser with a 60 MHz repetition rate of stretched femtosecond pulses is amplified in energy from several nanojoules to 0.4 mJ at a pulse repetition rate of 3 kHz in a wideband amplifier and then is compressed in time to 250 fs. The obtained radiation is used for generating femtosecond laser pulses with a centre wavelength of ∼2 μm, pulse energy of above 20 μJ, duration of several field oscillations, and phase stabilisation between the electromagnetic field and envelope. The other pulse of the driving fibre laser provides optical synchronisation and a minimal time delay and is directed to a regenerative Yb : YAG disk amplifier for amplification to an energy of 4 mJ at a pulse repetition rate of 3 kHz and duration of 20 ps. A multipass disk amplifier is developed for further increasing the energy of pump chirped pulses to an energy of 70 mJ at a pulse repetition rate of 10 Hz and duration of 400 ps for studying parametric amplification under sub-nanosecond pumping. (paper)

46 INSTRUMENTATION RELATED TO NUCLEAR SCIENCE AND ↗

Generation of high-power few-cycle femtosecond IR pulses by double-chirp parametric amplification

We present an energy scalable configuration for the generation of high-power few-cycle femtosecond IR pulses based on the sequential parametric amplification of chirped radiation pulses at the idler (0.86 μm) and signal (1.39 μm) wavelengths from the multi-terawatt femtosecond laser system made at the Institute of Laser Physics, Siberian Branch of the Russian Academy of Sciences (ILP SB RAS). The configuration under consideration involves the sequential production of radiation pulses with centre wavelengths of 2.24, 3.56, and 7.25 μm. The conditions are determined for the generation of few-cycle pulses with a terawatt peak power in the 3.56 μm (15.8 fs, 1.5 cycles) and 7.25 μm (17.2 fs, shorter than one cycle) domains. The phase transfer between signal and idler waves in the double-chirp parametric amplification is investigated for the first time. (paper)

71 CLASSICAL AND QUANTUM MECHANICS, GENERAL PHYSIC↗

Magnetic Field Amplification in the Thin X-Ray Rims of SN 1006

Several young supernova remnants, including SN 1006, emit synchrotron X-rays in narrow filaments, hereafter thin rims, along their periphery. The widths of these rims imply 50–100 μG fields in the region immediately behind the shock, far larger than expected for the interstellar medium compressed by unmodified shocks, assuming electron radiative losses limit rim widths. However, magnetic field damping could also produce thin rims. Here we review the literature on rim width calculations, summarizing the case for magnetic field amplification. We extend these calculations to include an arbitrary power-law dependence of the diffusion coefficient on energy, D ∝ Eμ. Loss-limited rim widths should shrink with increasing photon energy, while magnetic-damping models predict widths almost independent of photon energy. We use these results to analyze Chandra observations of SN 1006, in particular the southwest limb. We parameterize the FWHM in terms of energy as FWHM ∝ EmE γ. Filament widths in SN 1006 decrease with energy; mE ∼ −0.3 to −0.8, implying magnetic field amplification by factors of 10–50, above the factor of four expected in strong unmodified shocks. For SN 1006, the rapid shrinkage rules out magnetic damping models. It also favors short mean free paths (small diffusion coefficients) and strong dependence of D on energy (μ ≥ 1).

MAGNETIC FIELD AMPLIFICATION IN THE THIN X-RAY RIM↗

Non-Boolean quantum amplitude amplification and quantum mean estimation

This paper generalizes the quantum amplitude amplification and amplitude estimation algorithms to work with non-Boolean oracles. The action of a non-Boolean oracle $U_\varphi $ on an eigenstate $\mathinner {|{x}\rangle }$ is to apply a state-dependent phase-shift $\varphi (x)$. Unlike Boolean oracles, the eigenvalues $\exp (i\varphi (x))$ of a non-Boolean oracle are not restricted to be $\pm 1$. Two new oracular algorithms based on such non-Boolean oracles are introduced. The first is the non-Boolean amplitude amplification algorithm, which preferentially amplifies the amplitudes of the eigenstates based on the value of $\varphi (x)$. Starting from a given initial superposition state $\mathinner {|{\psi _0}\rangle }$, the basis states with lower values of $\cos (\varphi )$ are amplified at the expense of the basis states with higher values of $\cos (\varphi )$. The second algorithm is the quantum mean estimation algorithm, which uses quantum phase estimation to estimate the expectation $\mathinner {\langle {\psi _0|U_\varphi |\psi _0}\rangle }$, i.e., the expected value of $\exp (i\varphi (x))$ for a random x sampled by making a measurement on $\mathinner {|{\psi _0}\rangle }$. It is shown that the quantum mean estimation algorithm offers a quadratic speedup over the corresponding classical algorithm. Both algorithms are demonstrated using simulations for a toy example. Potential applications of the algorithms are briefly discussed.

71 CLASSICAL AND QUANTUM MECHANICS, GENERAL PHYSIC↗

Gene Amplification, Laboratory Evolution, and Biosensor Screening Reveal MucK as a Terephthalic Acid Transporter in Acinetobacter baylyi ADP1

Microbial terephthalic acid (TPA) catabolic pathways are conserved among the few bacteria known to turnover this xenobiotic aromatic compound. However, to date there are few reported cases in which this pathway has been successfully expressed in heterologous hosts to impart efficient utilization of TPA as a sole carbon source. In this work, we aimed to engineer TPA conversion in Acinetobacter baylyi ADP1 via the heterologous expression of catabolic and transporter genes from a native TPA-utilizing bacterium. Specifically, we obtained ADP1-derived strains capable of growing on TPA as the sole carbon source using chromosomal insertion and targeted amplification of the tph catabolic operon from Comamonas sp. E6. Adaptive laboratory evolution was then used to improve growth on this substrate. TPA consumption rates of the evolved strains, which retained multiple copies of the tph genes, were ~0.2 g/L/h (or ~1 g TPA/g cells/h), similar to that of Comamonas sp. E6 and almost 2-fold higher than that of Rhodococcus jostii RHA1, another native TPA-utilizing strain. To evaluate TPA transport in the evolved ADP1 strains, we engineered a TPA biosensor consisting of the transcription factor TphR and a fluorescent reporter. In combination with whole-genome sequencing, the TPA biosensor revealed that transport of TPA was not mediated by the heterologous proteins from Comamonas sp. E6. Instead, the endogenous ADP1 muconate transporter MucK, a member of the major facilitator superfamily, was responsible for TPA transport in several evolved strains in which MucK variants were found to enhance TPA uptake. Furthermore, the IclR-type transcriptional regulator DcaS was identified as a repressor of mucK expression. Overall, this work presents an unexpected function of a native protein identified through gene amplification, adaptive laboratory evolution, and a combination of screening methods. This study also provides a TPA biosensor for application in ADP1 and identifies transporter variants for use in metabolic engineering applications focused on plastic upcycling of polyesters.

59 BASIC BIOLOGICAL SCIENCES↗

Summer atmospheric circulation over Greenland in response to Arctic amplification and diminished spring snow cover

Abstract The exceptional atmospheric conditions that have accelerated Greenland Ice Sheet mass loss in recent decades have been repeatedly recognized as a possible dynamical response to Arctic amplification. Here, we present evidence of two potentially synergistic mechanisms linking high-latitude warming to the observed increase in Greenland blocking. Consistent with a prominent hypothesis associating Arctic amplification and persistent weather extremes, we show that the summer atmospheric circulation over the North Atlantic has become wavier and link this wavier flow to more prevalent Greenland blocking. While a concomitant decline in terrestrial snow cover has likely contributed to this mechanism by further amplifying warming at high latitudes, we also show that there is a direct stationary Rossby wave response to low spring North American snow cover that enforces an anomalous anticyclone over Greenland, thus helping to anchor the ridge over Greenland in this wavier atmospheric state.

54 ENVIRONMENTAL SCIENCES↗

Single-Shot Readout Performance of Two Heterojunction-Bipolar-Transistor Amplification Circuits at Millikelvin Temperatures

High-fidelity single-shot readout of spin qubits requires distinguishing states much faster than the T 1 time of the spin state. One approach to improving readout fidelity and bandwidth (BW) is cryogenic amplification, where the signal from the qubit is amplified before noise sources are introduced and room-temperature amplifiers can operate at lower gain and higher BW. We compare the performance of two cryogenic amplification circuits: a current-biased heterojunction bipolar transistor circuit (CB-HBT), and an AC-coupled HBT circuit (AC-HBT). Both circuits are mounted on the mixing-chamber stage of a dilution refrigerator and are connected to silicon metal oxide semiconductor (Si-MOS) quantum dot devices on a printed circuit board (PCB). The power dissipated by the CB-HBT ranges from 0.1 to 1 μW whereas the power of the AC-HBT ranges from 1 to 20 μW. Referred to the input, the noise spectral density is low for both circuits, in the 15 to 30 fA/√Hz range. The charge sensitivity for the CB-HBT and AC-HBT is 330 μe/√Hz and 400 μe/√Hz, respectively. For the single-shot readout performed, less than 10 its is required for both circuits to achieve bit error rates below 10-3, which is a putative threshold for quantum error correction.

71 CLASSICAL AND QUANTUM MECHANICS, GENERAL PHYSIC↗

Axial magnetic flux amplification in Hall-magnetohydrodynamic simulations of externally magnetized z-pinches

It is shown that externally magnetized gas-puff z-pinches under compression can exhibit robust axial flux amplification under suitable axial boundary conditions. This effect relies upon the Hall term in the generalized Ohm's law to generate azimuthal currents in the presence of a driving axial electric field. Under dynamic compression, the total current tends to flow in a mostly force-free boundary layer, separating the predominately azimuthal field outside the layer and the predominately axial field inside the layer. The effect only appears to occur if the axial boundaries allow for outflow or absorption of electromagnetic energy. The effect is mitigated by imposing either periodic or conducting axial boundary conditions. A semi-analytic equilibrium analysis agrees with steady-state solutions of the time-dependent electron-magnetohydrodynamic equations and provides an estimate of the scaling of the boundary layer as well as suggesting a scenario for the formation of the boundary layer. When operative, the effect can significantly impede plasma compression due to the increase in axial flux that diffuses into the pre-compressed plasma or through the presence of conductors that inhibit movement of the generated axial flux. Several facilities have noted unusual implosion behavior in z-pinch experiments with applied axial fields that does not appear to be explainable within the standard magnetohydrodynamic model. In conclusion, it is suggested that these experiments can be explained by the axial flux amplification and concentration effect

70 PLASMA PHYSICS AND FUSION TECHNOLOGY↗