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At least 523 records · Page 29

A comparison of metrics to evaluate the effects of hydro-facility passage stressors on fish

Hydropower is the most common form of renewable energy, and countries worldwide are considering expanding hydropower to new areas. One of the challenges of hydropower deployment is mitigation of the environmental impacts including water quality, habitat alterations, and ecosystem connectivity. For fish species that inhabit river systems with hydropower facilities, passage through the facility to access spawning and rearing habitats can be particularly challenging. Fish moving downstream through a hydro-facility can be exposed to a number of stressors (e.g., rapid decompression, shear forces, blade strike and collision, and turbulence), which can all affect fish survival in direct and indirect ways. Many studies have investigated the effects of hydro-turbine passage on fish; however, the comparability among studies is limited by variation in the metrics and biological endpoints used. Future studies investigating the effects of hydro-turbine passage should focus on using metrics and endpoints that are easily comparable. This review summarizes four categories of metrics that are used in fisheries research and have application to hydro-turbine passage (i.e., mortality, injury, molecular metrics, behavior) and evaluates them based on several criteria (i.e., resources needed, invasiveness, comparability among stressors and species, and diagnostic properties). Additionally, these comparisons are put into context of study setting (i.e., laboratory vs. field). Overall, injury and molecular metrics are ideal for studies in which there is a need to understand the mechanisms of effect, whereas behavior and mortality metrics provide information on the whole body response of the fish. The study setting strongly influences the comparability among studies. In laboratory-based studies, stressors can be controlled by both type and magnitude, allowing for easy comparisons among studies. In contrast, field studies expose fish to realistic passage environments but the comparability is limited. Based on these results, future studies, whether lab or field-based, should focus on metrics that relate to mortality for ease of comparison.

fish↗

Thermodynamics conditions of matter in neutron star mergers

Matter in neutron star collisions reaches densities up to few times the nuclear saturation threshold, ρ0 and temperatures up to one hundred MeV. Understanding the structure and composition of such matter requires many-body non-perturbative calculations that are currently highly uncertain. Unique constraints on the neutron star matter are provided by gravitational-wave observations aided by numerical relativity simulations. In this work, we explore the thermodynamical conditions of matter along the merger dynamics. Here we consider 3 microphysical equations of state and numerical relativity simulations including approximate neutrino transport. The neutron star cores collision and their multiple bounces heat the initially cold matter to several tens of MeV. Streams of hot matter with initial densities ~1-2ρ 0 move outwards and cool due to decompression and neutrino emission. The merger can result in a neutron star remnant with densities up to 3-5ρ 0 and temperatures ~50 MeV. The highest temperatures are confined in an approximately spherical annulus at densities ~ρ 0 . Such temperatures favour positron-neutron capture thus leading to a neutrino emission dominated by electron antineutrinos. We study the impact of trapped neutrinos on the remnant matter’s pressure, electron fraction and temperature and find that it has a negligible effect. Disks around neutron star or black hole remnant are neutron rich and not isentropic, but they differ in size, entropy and lepton fraction depending on the nature of the central object. In the presence of a black hole, disks are smaller and mostly transparent to neutrinos; in presence of a massive neutron star, they are more massive, geometrically and optically thick.

71 CLASSICAL AND QUANTUM MECHANICS, GENERAL PHYSIC↗

waveSZ: A Hardware-Algorithm Co-Design of Efficient Lossy Compression for Scientific Data

Error-bounded lossy compression is critical to the success of extreme-scale scientific research because of ever-increasing volumes of data produced by today's high-performance computing (HPC) applications. Not only can error-controlled lossy compressors significantly reduce the I/O and storage burden but they can retain high data fidelity for post analysis. Existing state-of-the-art lossy compressors, however, generally suffer from relatively low compression and decompression throughput (up to hundreds of megabytes per second on a single CPU core), which considerably restrict the adoption of lossy compression by many HPC applications especially those with a fairly high data production rate. In this paper, we propose a highly efficient lossy compression approach based on field programmable gate arrays (FPGAs) under the state-of-the-art lossy compression model SZ. Our contributions are fourfold. (1) We adopt a wavefront memory layout to alleviate the data dependency during the prediction for higher-dimensional predictors, such as the Lorenzo predictor. (2) We propose a co-design framework named WAVESZ based on the wavefront memory layout and the characteristics of SZ algorithm and carefully implement it by using high-level synthesis. (3) We propose a hardware-algorithm co-optimization method to improve the performance. (4) We evaluate our proposed WAVESZ on three real-world HPC simulation datasets from the Scientific Data Reduction Benchmarks and compare it with other state-of-the-art methods on both CPUs and FPGAs. Experiments show that our WAVESZ can improve SZ's compression throughput by 6.9x similar to 8.7x over the production version running on a state-of-the-art CPU and improve the compression ratio and throughput by 2.1x and 5.8x on average, respectively, respectively, compared with the state-of-the-art FPGA design.

Compression Ratio↗

Ultrafast Error-bounded Lossy Compression for Scientific Datasets

Today's scientific high-performance computing applications and advanced instruments are producing vast volumes of data across a wide range of domains, which impose a serious burden on data transfer and storage. Error-bounded lossy compression has been developed and widely used in the scientific community because it not only can significantly reduce the data volumes but also can strictly control the data distortion based on the user-specified error bound. Existing lossy compressors, however, cannot offer ultrafast compression speed, which is highly demanded by numerous applications or use cases (such as in-memory compression and online instrument data compression). In this paper, we propose a novel ultrafast error-bounded lossy compressor that can obtain fairly high compression performance on both CPUs and GPUs and with reasonably high compression ratios. The key contributions are threefold. (1) We propose a generic error-bounded lossy compression framework---called SZx---that achieves ultrafast performance through its novel design comprising only lightweight operations such as bitwise and addition/subtraction operations, while still keeping a high compression ratio. (2) We implement SZx on both CPUs and GPUs and optimize the performance according to their architectures. (3) We perform a comprehensive evaluation with six real-world production-level scientific datasets on both CPUs and GPUs. Experiments show that SZx is 2~16x faster than the second-fastest existing error-bounded lossy compressor (either SZ or ZFP) on CPUs and GPUs, with respect to both compression and decompression.

Yu, Xiaodong↗

The Fascinating and Complex Dynamics of Geyser Eruptions

Geysers episodically erupt liquid and vapor. Despite two centuries of scientific study, basic questions persist-why do geysers exist? What determines eruption intervals, durations, and heights? What initiates eruptions? Through monitoring eruption intervals, analyzing geophysical data, taking measurements within geyser conduits, performing numerical simulations, and constructing laboratory models, some of these questions have been addressed. Geysers are uncommon because they require a combination of abundant water recharge, magmatism, and rhyolite flows to supply heat and silica, and large fractures and cavities overlain by low-permeability materials to trap rising multiphase and multicomponent fluids. Eruptions are driven by the conversion of thermal to kinetic energy during decompression. Larger and deeper cavities permit larger eruptions and promote regularity by isolating water from weather variations. Furthermore, the ejection velocity may be limited by the speed of sound of the liquid + vapor mixture.

58 GEOSCIENCES↗

FPZIP

fpzip is a C/C++ library for lossless and lossy compression of 1D, 2D, and 3D single- and double-precision floating-point arrays. Although designed for lossless compression, the user may optionally request lossy compression by specifying how many bits of precision per floating-point value to retain. Fpzip supports streaming compression and decompression with either a memory buffer or a file as source or destination. In addition to a simple C interface, fpzip comes with an executable for (de)compressing binary files.

Lindstrom, PeterG↗

ZHW hardware library

Hardware library implementation of the open source ZFP CODEC. ZHP provides a sub-set of the ZFP library compression and decompression functionality, but in the SystemC language rather than the C/C++ and Fortran languages used in the ZFP implementation.

Barrow, MichaelJ↗

Z-checker: A framework for assessing lossy compression of scientific data

Because of the vast volume of data being produced by today’s scientific simulations and experiments, lossy data compressor allowing user-controlled loss of accuracy during the compression is a relevant solution for significantly reducing the data size. However, lossy compressor developers and users are missing a tool to explore the features of scientific data sets and understand the data alteration after compression in a systematic and reliable way. To address this gap, we have designed and implemented a generic framework called Z-checker. On the one hand, Z-checker combines a battery of data analysis components for data compression. On the other hand, Z-checker is implemented as an open-source community tool to which users and developers can contribute and add new analysis components based on their additional analysis demands. In this article, we present a survey of existing lossy compressors. Then, we describe the design framework of Z-checker, in which we integrated evaluation metrics proposed in prior work as well as other analysis tools. Specifically, for lossy compressor developers, Z-checker can be used to characterize critical properties (such as entropy, distribution, power spectrum, principal component analysis, and autocorrelation) of any data set to improve compression strategies. For lossy compression users, Z-checker can detect the compression quality (compression ratio and bit rate) and provide various global distortion analysis comparing the original data with the decompressed data (peak signal-to-noise ratio, normalized mean squared error, rate–distortion, rate-compression error, spectral, distribution, and derivatives) and statistical analysis of the compression error (maximum, minimum, and average error; autocorrelation; and distribution of errors). Z-checker can perform the analysis with either coarse granularity (throughout the whole data set) or fine granularity (by user-defined blocks), such that the users and developers can select the best fit, adaptive compressors for different parts of the data set. Z-checker features a visualization interface displaying all analysis results in addition to some basic views of the data sets such as time series. To the best of our knowledge, Z-checker is the first tool designed to assess lossy compression comprehensively for scientific data sets.

97 MATHEMATICS AND COMPUTING↗

How chip size impacts steam pretreatment effectiveness for biological conversion of poplar wood into fermentable sugars

We report that woody biomass is highly recalcitrant to enzymatic sugar release and often requires significant size reduction and severe pretreatments to achieve economically viable sugar yields in biological production of sustainable fuels and chemicals. However, because mechanical size reduction of woody biomass can consume significant amounts of energy, it is desirable to minimize size reduction and instead pretreat larger wood chips prior to biological conversion. To date, however, most laboratory research has been performed on materials that are significantly smaller than applicable in a commercial setting. As a result, there is a limited understanding of the effects that larger biomass particle size has on the effectiveness of steam explosion pretreatment and subsequent enzymatic hydrolysis of wood chips. To address these concerns, novel downscaled analysis and high throughput pretreatment and hydrolysis (HTPH) were applied to examine whether differences exist in the composition and digestibility within a single pretreated wood chip due to heterogeneous pretreatment across its thickness. Heat transfer modeling, Simons’ stain testing, magnetic resonance imaging (MRI), and scanning electron microscopy (SEM) were applied to probe the effects of pretreatment within and between pretreated wood samples to shed light on potential causes of variation, pointing to enzyme accessibility (i.e., pore size) distribution being a key factor dictating enzyme digestibility in these samples. Application of these techniques demonstrated that the effectiveness of pretreatment of Populus tremuloides can vary substantially over the chip thickness at short pretreatment times, resulting in spatial digestibility effects and overall lower sugar yields in subsequent enzymatic hydrolysis. Finally, these results indicate that rapid decompression pretreatments (e.g., steam explosion) that specifically alter accessibility at lower temperature conditions are well suited for larger wood chips due to the non-uniformity in temperature and digestibility profiles that can result from high temperature and short pretreatment times. Furthermore, this study also demonstrated that wood chips were hydrated primarily through the natural pore structure during pretreatment, suggesting that preserving the natural grain and transport systems in wood during storage and chipping processes could likely promote pretreatment efficacy and uniformity.

09 BIOMASS FUELS↗

Homomorphic data compression for real time photon correlation analysis

The construction of highly coherent X-ray sources, combined with next-generation detectors that are larger and faster, has enabled new research opportunities across the scientific landscape. Among the techniques that benefit most from these advancements is X-ray photon correlation spectroscopy (XPCS), where faster acquisition unlocks the ability to study faster dynamics within samples. However, faster acquisition on larger detectors also introduces unprecedented challenges for online data processing and offline data storage. Such challenges are particularly prominent for XPCS, where real time analyses require simultaneous calculation of all the previously acquired data in the time series. We present a homomorphic compression scheme to effectively reduce the computational time and memory space required for XPCS analysis. Leveraging similarities in the mathematical expression between a matrix-based compression algorithm and the correlation calculation, our approach allows direct operation on the compressed data without their decompression. The offline compression scheme extends storage capacity by a factor of 40 while preserving key features in the lossy compressed data. Meanwhile, the online compression scheme reduces the computational time to below 1 ms, enabling real time calculation of the correlation functions at kHz framerate. Our demonstration of a homomorphic compression of scientific data provides an effective solution to the big data challenge at coherent light sources. Beyond the example shown in this work, the framework can be extended to facilitate real-time operations directly on a compressed data stream for other techniques.

36 MATERIALS SCIENCE↗

Utah FORGE: Interferometric Synthetic Aperture Radar Data from 2023 and 2024

The dataset comprises Interferometric Synthetic Aperture Radar (InSAR) data from the TerraSAR-X and TanDEM-X satellite missions, covering the Utah FORGE site. This data includes interferometric pairs created using GMT-SAR processing software, chosen for their short orbital separations between May 1, 2023, and June 30, 2024. Included are various data and metadata, including Digital Elevation Models, unit vectors, and correlation coefficients. The dataset is packaged in several compressed tar files and formatted in NetCDF. To utilize this dataset, users will need software capable of handling NetCDF files and tools for decompressing tar files.

15 GEOTHERMAL ENERGY↗

Data from: 'Abiotic influences on continuous conifer forest structure across a subalpine watershed'

This package archives the core data used for analysis and inference in 'Abiotic influences on continuous conifer forest structure across a subalpine watershed' (Worsham et al., 2025). All data were collected in the East River, Washington Gulch, Slate River, and Coal Creek watersheds of Colorado. In the paper, we quantified the relative influence of climate, topographic, edaphic, and geologic factors on conifer stand structure and composition, and their functional relationships, at the watershed scale. We used waveform LiDAR data to derive spatially continuous stand structure metrics. We fused these with a species-level classification map to estimate tree species abundance. We applied generalized additive and generalized boosted models to evaluate the covariability of structural and compositional metrics with abiotic variables. The package contains the essential products required for reproducing our analysis and the tables and figures reported in the publication. The products comprise four classes: (1) geospatial data, (2) tabular data used for inferential analysis, (3) tabular data describing analytical results and performance statistics, and (4) a data user guide. (1) includes discretized waveform LiDAR data, locations and attributes of individual tree crowns, sampling locations and domain boundaries, a canopy height model, and raster files of estimated forest structural and compositional metrics at 100 m grid scale. (2) includes all response and explanatory variable values applied in inferential models. Response variables include conifer forest stand density, basal area, 95th percentile height, quadratic mean diameter, and others. Explanatory variables include climatic water deficit, actual evapotranspiration, elevation, heat load, soil available water content, and others. (3) includes results of training and testing several individual tree detection (ITD) algorithms, as well as inferential modeling results. (4) is a PDF user guide for this data package, including detailed descriptions and data dictionaries for all files. The data package root contains 17 assets: 8 compressed tape archive (.tar.gz) files, 5 comma-separated values (.csv) files, 3 Geographic Tagged Image File Format (GeoTIFF) (.tif) files, and 1 Portable Document Format (.pdf) file. The compressed .tar.gz archives contain ESRI shapefiles (.shp) .tif, compressed LASer (.laz), and .csv files. The archives must first be decompressed using the widely distributed command-line software utility TAR. All other files, including constituent files within the .tar.gz archives, can be opened in the open-source R statistical computing environment. Alternatively, .csv files may also be read in any simple text editor software or Microsoft Excel. Geospatial files including .shp and .tif files can also be opened in GIS software, such as QGIS (open-source) or ESRI ArcGIS (proprietary). The .pdf Data User Guide can be read with Adobe Acrobat Reader or other compatible readers.

2018 NEON and 2025 CHESS Campaigns↗

High-pressure study of dravite tourmaline: Insights into the accommodating nature of the tourmaline structure

The high-pressure behavior of dravite tourmaline [Na(Mg 3 )Al 6 (Si 6 O 18 )(BO 3 ) 3 (OH) 3 (OH)] has been studied using luminescence spectroscopy and synchrotron-based single-crystal diffraction up to ~65 and ~24 GPa, respectively. Two emission bands associated with Cr 3+ /V 2+ substitution are constant in energy up to ~9.0 GPa, and they shift to longer wavelength at higher pressures, suggesting that a change in compressional mechanism could occur at this pressure. Single-crystal diffraction data show subtle changes in ring ditrigonality occur near 9.0 GPa, which could cause the observed change in luminescence. Near 15 GPa, a splitting of one of the emission bands is observed, suggesting that a phase transition occurs at this pressure and that two unique octahedral sites are present in the high-pressure phase. Hysteresis is not observed on decompression, which indicates that this is a second-order transition, and the high-pressure structure appears to be metastable up to ~65 GPa. Single-crystal diffraction measurements show that a phase transition from rhombohedral R3m to rhombohedral R3 occurs at pressures near 15.4 GPa. The high-pressure phase is characterized by a distorted Si 6 O 18 ring (e.g., the Si-Si-Si angles deviate from 120°), and the Si, Al, O6, O7, and O8 sites of the low-pressure phase split, implying that the high-pressure phase of tourmaline is a higher entropy phase. The large X-site exerts the primary control on compressibility, and the substitution of larger cations into this site will likely lower the pressure at which this transition occurs. Dravite tourmaline shows anisotropic compression with the c-axis being more compressible than the a-axis. The pressure and volume data up to ~15.4 GPa were fit with second- and third-order Birch-Murnaghan equations of state. We obtain a bulk modulus, K 0 = 109.6(3.2) GPa, and a pressure derivative, K 0' = 4.6(8) GPa, and with the pressure derivative set to 4, a bulk modulus of 112.0(1.0) GPa is derived. Moreover, our high-pressure results show that massive overbonding of the X and Y sites can be accommodated by the tourmaline structure. Finally, this unexpected result may explain the extraordinary structural tolerance with respect to chemical substitution on the X, Y, and Z sites.

58 GEOSCIENCES↗

Spallation As The Dominant Source of Pusher-Fuel and Hot-Spot Mix In ICF Capsules

We report that the dominant source of pusher-fuel and hot-spot “mix” that has degraded the yields of modern ICF capsules designed and fielded to achieve high yield has likely been the spallation of small chunks or “grains” of pusher material into the fuel regions—not hydrodynamic instabilities. Such “spallation mix” occurs at the passage of the first strong shock whenever (1) the solid pusher adjacent to the fuel changes its phase by nucleation, and (2) such material when shocked (i.e., compressed and superheated, but still a solid) is subject to spallation when suddenly decompressed. When such spallation occurs, we show that it is the dominant mix mechanism by comparing the predictions of a spallation-mix model with measured experimental data, and by referring to direct experimental observations. We also explain how to eliminate this mix mechanism and thus allow higher yields for ICF capsules.

42 ENGINEERING↗

A Preliminary Assessment of Barotrauma Injuries and Acclimation Studies for Three Fish Species

Fish that pass hydro structures either through turbine passage, deep spill, or other deep pathways can experience rapid decreases in pressure that can result in barotrauma. In addition to morphology and physiology of the fish’s swim bladder, the severity of barotrauma is directly related to the volume of undissolved gas in fish prior to rapid decompression and the lowest pressure the fish experience as they pass hydro structures (termed the “nadir”). The volume of undissolved gas in fish is influenced by the depth of acclimation (the pressure at which the fish is neutrally buoyant); therefore, determining the depth where fish are neutrally buoyant is a critical precursor to determining the relationship between pressure changes and injury or mortality.

60 APPLIED LIFE SCIENCES↗

Comparative Study of Barotrauma Risk during Fish Passage through Kaplan Turbines

Rapid pressure changes in hydroelectric turbine flows can cause barotrauma that can be hazardous to the passage of fish, in particular migratory juvenile salmonids. Although numerous laboratory tests have evaluated the effect of rapid decompression in fish species of relevance, numerical modeling studies offer the advantage of predicting, for new turbine designs, the potential risks of mortality and injury from rapid pressure change during turbine passage. However, rapid pressure change is only one of several hydraulic risks encountered by fish during turbine passage in addition to blade strike, shear, and turbulence. To better understand the role of rapid pressure changes, the present work focuses on the application of a computational fluid dynamics based method for evaluating the risk of pressure-related mortality to fish passing through an early 1960s era original hydroelectric Kaplan turbine at Wanapum Dam (Columbia River, Washington), and a modern advanced Kaplan turbine installed in 2005. The results show that the modeling approach acceptably reproduced the nadir pressure distributions compared to field data previously collected at the site using an autonomous sensor. Our findings show that the new advanced-design unit performs better, in terms of reduced barotrauma risk to fish from exposure to low pressures, than the original turbine unit. The outcomes allow for comparative analyses of turbine designs and operations prior to installation, an advantage that can potentially be integrated in the process of designing new turbine units to achieve superior environmental performance. Overall, the results show that modern turbine designs can achieve the multiple objectives of increasing power generation, lowering cavitation potential, and reducing barotrauma risks to passing fish.

13 HYDRO ENERGY↗