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At least 415 records · Page 23

Mining Thermophile Photosynthesis Genes: A Synthetic Operon Expressing Chloroflexota Species Reaction Center Genes in Rhodobacter sphaeroides

Photosynthesis is the foundation of the vast majority of life systems, and is therefore the most important bioenergetic process on earth. The greatest diversity of photosynthetic systems is found in microorganisms. However, our understanding of the biophysical and biochemical processes that transduce light into chemical energy is derived from a relatively small subset of proteins from microbes that are amenable to cultivation, in contrast to the huge number of predicted proteins that catalyze the initial photochemical reactions deposited in databases, such as from metagenomics. We describe the use of a Rhodobacter sphaeroides laboratory strain for the expression of heterologous photosynthesis genes to demonstrate the feasibility of mining this resource, focusing on hot spring Chloroflexota gene sequences. Using a synthetic operon of genes, we produced a photochemically active complex of reaction center proteins in our biological system. We also present bioinformatic analyses of anoxygenic type II reaction center sequences from metagenomic samples collected from hot (42–90 °C) springs available through the JGI IMG database, to generate a resource of diverse sequences that are potentially adapted to photosynthesis at such temperatures. These data provide a view into the natural diversity of anoxygenic photosynthesis, through a lens focused on high-temperature environments. The approach we took to express such genes can be applied for potential biotechnology purposes as well as for studies of fundamental catalytic properties of these heretofore inaccessible protein complexes.

Chloroflexota↗

Hydrogen, Methane, Brine Flow Behavior, and Saturation in Sandstone Cores During H 2 and CH 4 Injection and Displacement

Large-scale underground hydrogen storage (UHS) is a critical component in the emerging hydrogen economy. Knowledge of multiphase flow behavior involving hydrogen in storage reservoir formations is crucial to characterizing hydrogen transport properties and essential for the deliverability and storage operations of UHS. There are still many gaps in fully understanding hydrogen–methane–brine multiphase phase flow that require further investigation. In this work, H 2 and CH 4 were injected through brine-saturated sandstone cores using a tri-axial core holder system fitted with flow rate meters and pressure transducers, while the effluent gas concentrations were analyzed using an online micro gas chromatograph. Brine displacement, permeability, and gas breakthrough curves were measured. We studied the flow behavior of hydrogen and methane in sandstone cores through testing brine displacement by gas injection and comparing the hydrogen displacement of methane with the methane displacement of hydrogen. We also tested the differences between horizontal and vertical flow in brine displacement. The results showed that brine displacement was more efficient in a core with higher permeability and porosity, resulting in a higher initial gas saturation. A higher gas injection rate brought about faster gas breakthrough measured by pore volume and sharper concentration curves. Hydrogen did not exhibit abnormal flow in the sandstone when the flow was horizontal and downward vertical. Gas overriding was observed in brine displacements when the flow was horizontal, with hydrogen showing this behavior more profoundly compared to methane. Downward vertical gas injection induced higher efficiency brine displacement compared to horizontal displacement and resulted in a higher initial gas saturation in the sandstone cores. These findings address critical knowledge gaps regarding gas flow patterns and displacement behaviors during hydrogen injection and recovery phases in UHS facilities using methane as the cushion gas. The insights from this research offer valuable guidance for optimizing UHS systems, ensuring operational efficiency, and advancing sustainable energy solutions in alignment with decarbonization goals.

08 HYDROGEN↗

IL-10 Signaling Elicited by Nivolumab-Induced Activation of the $\mathrm{MAP}$ Kinase Pathway Does Not Fully Contribute to Nivolumab-Modulated Heterogeneous T Cell Responses

Immune checkpoint inhibitor (ICI) therapy has revolutionized anti-cancer treatment for many late-stage cancer patients. However, ICI therapy has thus far demonstrated limited efficacy for most patients, and it remains unclear why this is so. Interleukin 10 (IL-10) is a cytokine that has been recognized as a central player in cancer biology with its ability to inhibit anti-tumor T cell responses. Recent studies suggest that IL-10 might also exert some intrinsic anti-tumor T cell responses, and clinical studies using recombinant IL-10 alone or in combination with ICI are underway. This paradoxical effect of IL-10 and its underlying mechanisms impacting ICI-modulated T cell responses remain poorly understood. In this study, using an in vitro mixed lymphocyte reaction assay, we found that treatment with ICIs such as the anti-programmed cell death receptor-1 (PD-1) mAb nivolumab elicits a strong expression of IL-10. While neutralization of IL-10 signaling with an anti-IL-10 specific mAb significantly decreases the production of IFN-γ by T cells in a cohort of donor cells, the opposite effect was observed in other donor cells. Similarly, neutralization of IL-10 signaling significantly decreases the expression of T cell activation markers Ki67 and CD25, as well as the production of Granzyme B in a cohort of donor cells, whereas the opposite effect was observed in others. Furthermore, we found that nivolumab and IL-10 differentially modulate the signal transducer and activator of transcription 3 (STAT3) and AKT serine–threonine kinase pathways. Finally, we found that nivolumab activates the mitogen-activated protein kinase (MAPK) pathway, which in turn is responsible for the observed induction of IL-10 production by nivolumab. These findings provide new insights into the mechanisms underlying anti-PD-1-modulated T cell responses by IL-10, which could lead to the discovery of novel combination treatments that target IL-10 and immune checkpoint molecules.

37 INORGANIC, ORGANIC, PHYSICAL, AND ANALYTICAL CH↗

Acoustic Tomography of the Atmosphere: A Large-Eddy Simulation Sensitivity Study

Accurate measurement of atmospheric turbulent fluctuations is critical for understanding environmental dynamics and improving models in applications such as wind energy. Advanced remote sensing technologies are essential for capturing instantaneous velocity and temperature fluctuations. Acoustic tomography (AT) offers a promising approach that utilizes sound travel times between an array of transducers to reconstruct turbulence fields. This study presents a systematic evaluation of the time-dependent stochastic inversion (TDSI) algorithm for AT using synthetic travel-time measurements derived from large-eddy simulation (LES) fields under both neutral and convective atmospheric boundary-layer conditions. Unlike prior work that relied on field observations or idealized fields, the LES framework provides a ground-truth atmospheric state, enabling quantitative assessment of TDSI retrieval reliability, sensitivity to travel-time measurement noise, and dependence on covariance model parameters and temporal data integration. A detailed sensitivity analysis was conducted to determine the best-fit model parameters, identify the tolerance thresholds for parameter mismatch, and establish a maximum spatial resolution. The TDSI algorithm successfully reconstructed large-scale velocity and temperature fluctuations with root mean square errors ( RMSE s) below 0.35 m/s and 0.12 K, respectively. Spectral analysis established a maximum spatial resolution of approximately 1.4 m, and reconstructions remained robust for travel-time measurement uncertainties up to 0.002 s. These findings provide critical insights into the operational limits of TDSI and inform future applications of AT for atmospheric turbulence characterization and system design.

17 WIND ENERGY↗

Pipeline Monitoring Using Highly Sensitive Vibration Sensor Based on Fiber Ring Cavity Laser

A vibration fiber sensor based on a fiber ring cavity laser and an interferometer based single-mode-multimode-single-mode (SMS) fiber structure is proposed and experimentally demonstrated. The SMS fiber sensor is positioned within the laser cavity, where the ring laser lasing wavelength can be swept to an optimized wavelength using a simple fiber loop design. To obtain a better signal-to-noise ratio, the ring laser lasing wavelength is tuned to the maximum gain region biasing point of the SMS transmission spectrum. A wide range of vibration frequencies from 10 Hz to 400 kHz are experimentally demonstrated. In addition, the proposed highly sensitive vibration sensor system was deployed in a field-test scenario for pipeline acoustic emission monitoring. An SMS fiber sensor is mounted on an 18” diameter pipeline, and vibrations were induced at different locations using a piezoelectric transducer. The proposed method was shown to be capable of real-time pipeline vibration monitoring.

47 OTHER INSTRUMENTATION↗

Bayesian Estimation of Oscillator Parameters: Toward Anomaly Detection and Cyber-Physical System Security

Cyber-physical system security presents unique challenges to conventional measurement science and technology. Anomaly detection in software-assisted physical systems, such as those employed in additive manufacturing or in DNA synthesis, is often hampered by the limited available parameter space of the underlying mechanism that is transducing the anomaly. As a result, the formulation of anomaly detection for such systems often leads to inverse or ill-posed problems, requiring statistical treatments. Here, we present Bayesian inference of unknown parameters associated with a generic actuator considered as a representative vital element of a cyber-physical system. Via a series of experimental input-output measurements, a transfer function for the actuator is obtained numerically, which serves as our model for the proposed method. Linear, nonlinear, and delayed dynamics may be assumed for the actuator response. By devising a code-based malicious signal, we study the efficacy of Bayesian inference for its potential to produce a detection, including uncertainty quantification, with a remarkably small number of input data points. Our approach should be adaptable to a variety of real-time cyber-physical anomaly detection scenarios.

47 OTHER INSTRUMENTATION↗

Rotating-Coil Measurement System for Small-Bore-Diameter Magnet Characterization

Rotating-coil measurement systems are widely used to measure the multipolar fields of particle accelerator magnets. This paper presents a rotating-coil measurement system that aims at providing a complete data set for the characterization of quadrupole magnets with small bore diameters (26 mm). The PCB magnetometer design represents a challenging goal for this type of transducer. It is characterized by an aspect ratio 30% higher than the state of the art, imposed by the reduced dimension of the external radius of the rotating shaft and the necessity of covering the entire magnet effective length (500 mm or higher). The system design required a novel design for the mechanical asset, also considering the innovation represented by the commercial carbon fiber tube, housing the PCB magnetometer. Moreover, the measurement system is based primarily on standard and commercially available components, with simplified control and post-processing software applications. The system and its components are cross-calibrated using a stretched-wire system and another rotating-coil system. The measurement precision is established in a measurement campaign performed on a quadrupole magnet characterized by an inner bore diameter of 45 mm.

42 ENGINEERING↗

Testing piezoelectric sensors in a nuclear reactor environment

Several Department of Energy Office of Nuclear Energy (DOE-NE) programs, such as the Fuel Cycle Research and Development (FCRD), Advanced Reactor Concepts (ARC), Light Water Reactor Sustainability, and Next Generation Nuclear Power Plants (NGNP), are investigating new fuels, materials, and inspection paradigms for advanced and existing reactors. A key objective of such programs is to understand the performance of these fuels and materials during irradiation. In DOE-NE’s FCRD program, ultrasonic based technology was identified as a key approach that should be pursued to obtain the high-fidelity, high-accuracy data required to characterize the behavior and performance of new candidate fuels and structural materials during irradiation testing. The radiation, high temperatures, and pressure can limit the available tools and characterization methods. In this work piezoelectric transducers capable of making these measurements are developed. Specifically, three piezoelectric sensors (Bismuth Titanate, Aluminum Nitride, and Zinc Oxide) are tested in the Massachusetts Institute of Technology Research reactor to a fast neutron fluence of 8.65x1020 nf/cm2. It is demonstrated that Bismuth Titanate is capable of transduction up to 5 x1020 nf/cm2, Zinc Oxide is capable of transduction up to at least 6.27 x1020 nf/cm2 , and Aluminum Nitride is capable of transduction up to at least 8.65x x1020 nf/cm2.

T. Reinhardt, Brian↗

Recruitment of Polo-like kinase couples synapsis to meiotic progression via inactivation of CHK-2

Meiotic chromosome segregation relies on synapsis and crossover (CO) recombination between homologous chromosomes. These processes require multiple steps that are coordinated by the meiotic cell cycle and monitored by surveillance mechanisms. In diverse species, failures in chromosome synapsis can trigger a cell cycle delay and/or lead to apoptosis. How this key step in ‘homolog engagement’ is sensed and transduced by meiotic cells is unknown. Here we report that in C. elegans , recruitment of the Polo-like kinase PLK-2 to the synaptonemal complex triggers phosphorylation and inactivation of CHK-2, an early meiotic kinase required for pairing, synapsis, and double-strand break (DSB) induction. Inactivation of CHK-2 terminates DSB formation and enables CO designation and cell cycle progression. These findings illuminate how meiotic cells ensure CO formation and accurate chromosome segregation.

59 BASIC BIOLOGICAL SCIENCES↗

Thermally Anisotropic Composites for Heat Redirection and Thermal Management in Building Envelopes

In building envelope systems, thermal management is important from energy conservation and thermal comfort perspectives, and is typically done via insulation, thermal mass, solar control and shading, etc. Thermal anisotropy is commonly utilized in electronics for heat dissipation. This article investigates the feasibility of utilizing thermally anisotropic composites (TACs) to reduce unwanted heat gains and losses through the building envelope by redirecting the heat transfer to or from appropriate heat sinks and sources.Numerical simulations of building envelope components using COMSOL Multiphysics and whole building simulations using EnergyPlus (E+) were performed to estimate the energy savings potential of TACs used in external walls of residential buildings. Application of TACs was compared with baseline walls with cavity insulation as well as with and without exterior continuous insulation (CI). The COMSOL simulations indicated 75% or higher reductions in heat gains when using a TAC coupled with a heat sink compared to an exterior CI case. In terms of energy savings in a hot climate, E+ models estimated cooling energy savings of 19% with a "TAC + heat sink" compared to a baseline wall with only cavity insulation. Further, a small-scale test sample with a TAC-heat sink system was built and tested in a multi-transducer heat flow meter (HFM). The heat sink was a copper tube circulating cold water. The experiments verified the re-direction of heat to a sink and significant reduction in heat transfer through the test specimen. The experiments showed that the heat redirection only occurred in the presence of both thermal anisotropy and water circulation; if either element was missing, the system behaved like a traditional envelope component.

Biswas, Kaushik↗

Ultrasonic analyte concentration and application in flow cytometry

The present invention includes an apparatus and corresponding method for concentrating analytes within a fluid flowing through a tube using acoustic radiation pressure. The apparatus includes a function generator that outputs a radio frequency electrical signal to a transducer that transforms the radio frequency electric signal to an acoustic signal and couples the acoustic signal to the tube. The acoustic signal is converted within the tube to acoustic pressure that concentrates the analytes within the fluid.

71 CLASSICAL AND QUANTUM MECHANICS, GENERAL PHYSIC↗

Full circle mechanical dynamic characterization including experimental modal analysis and finite element analysis

During operation, it was observed that a specific mechanical system experienced undesirable vibration and it became necessary to understand and mitigate this phenomenon. This document investigates the tools, methodology, and results of the dynamic characterization of the system. The characterization makes use of the experimental modal analysis (EMA) methods of single input multiple output (SIMO) and single input single output (SISO). The validity of the theory of reciprocity is confirmed to minimize measurement error, cost, and time of repeat testing. Finite element analysis (FEA) is used in choosing transducer and modal impact locations to adequately characterize the system. Single degree of freedom (SDOF) and multiple degree of freedom (MDOF) curve fitting is used to fully characterize the system’s mode shapes and natural frequencies. The EMA characterization results are used to modify and validate the FEA model so that FEA can be used to model potential structural modifications to the system to mitigate the undesirable vibration. Structural modifications are chosen, implemented, and their effectiveness is quantified using EMA. Finally, a qualitative evaluation of the methodology of FEA validation by EMA and tuning of the model to match the experimental results is discussed.

42 ENGINEERING↗

Retractable Sensor for Reactor Experiments

This presentation is to orient a mechanical or nuclear engineering senior design team so that they can help solve an instrumentation problem found in high power test reactors. Test reactors such as the Advanced Test Reactor (ATR) at the Idaho National Laboratory are used to irradiate nuclear fuels and materials to evaluate performance after high levels of exposure to a reactor in-pile environment. The purpose of the experiments is to determine property changes as the materials or fuels are bombarded with fast neutrons (and thermal (slow) neutrons as well). Typically, the irradiation must take place at a very specific temperature. Sometimes other parameters are monitored as well as properties such as creep, or gas composition, etc. However, the fast neutrons cause changes in not only the materials, but also in the transducers that are placed in the neutron flux, e.g., thermocouples or optical fibers. This task will be limited to considering temperature measurements. Thermocouples experience decalibration from not only the neutron flux, but also from the very high temperatures that are sometimes measured. Optical fibers darken in a neutron or gamma flux. However, it takes quite a few hours, or days for these changes to manifest. High power test reactors typically run at a constant power and so the temperature in an experiment is fairly stable over time. Because the changes are typically very slow, even a single temperature measurement per day, would provide 95% of a perfect data set. The basic concept of this effort is to push a very small diameter thermocouple or optical fiber into the location to be measured, leave it for 30 seconds or so for it to come to equilibrium, and transmit the signal, and then pull it up and away from the high neutron flux and high temperature region. The distance the thermocouple or fiber would need to move is on the order of 50 – 100 cm. By doing this, the thermocouple junction or optical fiber would spend only a few hours in the high flux/high temperature environment over the life of the irradiation.

46 INSTRUMENTATION RELATED TO NUCLEAR SCIENCE AND ↗

Performance Evaluation of High-Temperature Ultrasonic Communication System

Ultrasonic communication is a technique that allows transmitting information through a solid material such as tubes or bars using high-frequency elastic waves. The communication channels often extend into a high-temperature range in the field of power, oil, or nuclear industry. When the temperature is taken into consideration, the ultrasonic wave propagation through the solid channel is complex and unpredictable. It is necessary to study the influence of temperature on the ultrasonic guided wave to improve ultrasonic communication. In this study, a temperature control system is assembled to adjust the temperature of a steel pipe channel ranging from room temperature to 150 degrees C. The temperature performance evaluation is conducted to estimate the signal-to-noise ratio (SNR) and bit error rate (BER) of transferring the ultrasonic signal. The work aims to develop a reliable ultrasonic communication system in a high-temperature environment. The system temperature can be maintained at 150 degrees C and the LiNbO3 transducers are used as transmitters and receivers. No power amplifier is used in the communication system. The high-temperature ultrasonic communication system (HT-UCS) is feasible at 150 degrees C and can achieve a bit rate of 10 kbps without any error.

HT-UCS↗

The Baryon Mapping Experiment (BMX), a 21cm intensity mapping pathfinder

The Baryon Mapping eXperiment (BMX) is an interferometric array designed as a pathfinder for a future post- reionization 21 cm intensity mapping survey. It consists of four 4-meter parabolic reflectors each having offset pyramidal horn feed, quad-ridge orthomode transducer, temperature-stabilized RF amplification and filtering, and pulsed noise injection diode. An undersampling readout scheme uses 8-bit digitizers running at 1.1 Gsamples/sec to provide access to signals from 1.1 - 1.55 GHz (third Nyquist zone), corresponding to HI emission from sources at redshift 0 < z < 0.3. An FX correlator is implemented in GPU and generates 28 GB/day of time-ordered visibility data. About 7,000 hours of data were collected from Jan. 2019 - May 2020, and we will present results on system performance including sensitivity, beam mapping studies, observations of bright celestial targets, and system electronics upgrades. BMX is a pathfinder for the proposed PUMA intensity mapping survey in the 2030s.

79 ASTRONOMY AND ASTROPHYSICS↗

Optimization Of In-field Alpha Spectrometry For Uranium Enrichment Determination In Uranium Hexafluoride

In response to needs identified by the International Atomic Energy Agency (IAEA) research is underway to develop In-Field Alpha Spectrometry (IFAS) as a method to allow IAEA safeguards inspectors to collect samples of uranium hexafluoride (UF6) at processing facilities to assess and verify uranium enrichment. For sample collection, the IFAS method uses Single-Use Destructive Assay (SUDA) samplers, which contain thin zeolite coatings that trap UF6 gas and convert it to the safer, more stable form uranyl fluoride (as a dihydrate, UO2F2&middot;2H2O). For alpha spectrometry, the IFAS instrument employs a large area silicon semiconductor transducer to detect and record alpha particle energy-deposition events. Over the past year optimization work has significantly increased the diameter of useful SUDA samples (from 12.7 mm to 48 mm), improved the manufacturability and reproducibility of SUDA samples, increased the area of the IFAS alpha spectrometer sensor from 1.2 cm to 3.1 cm, and improved source positioning within the IFAS. This paper will report on this optimization work, its impacts on IFAS performance, and future plans for IFAS miniaturization, improvements, and testing.

Chichester, David↗

System and method for inspecting parts using dynamic response function

A system and method for the non-destructive testing of additively manufactured parts. An input mechanism excites with an excitation force (e.g., a vibration) an additive manufacturing build structure, which includes a part on a build platform, to induce a dynamic response in the part. An output mechanism (e.g., a non-contact transducer) senses the induced dynamic response in the part. A processor determines and examines the relationship between the response and excitation to identify an indication of a defect in the part, and communicates an alert if the indication is identified. The processor may compare the phase, magnitude, coherence, or time delay of the relationship to a reference relationship and/or may compare the modal frequency or the modal damping to a reference to identify a deviation greater than a pre-established threshold.

Hartwig, Troy Juan↗

Truncated nonlinear interferometer-based atomic force microscopes

A truncated non-linear interferometer-based atomic force microscope (AFM) includes an input port and a non-linear amplifier that renders a probe beam and a conjugate beam. The AFM includes local oscillators having a relationship with the probe beam and the conjugate beam. The displacement of the AFM's cantilever is transduced by the probe beam, and/or the conjugate beam or their respective local oscillators. The AFM's phase-sensitive detectors detect a phase modulation between the respective local oscillators and the probe beam and the conjugate beam. The detected phase modulation corresponds to the change in phase. The AFM's circuitry measures phase signals that are indicative of the cantilever displacement. The resulting measurement signals exhibit a quantum noise reduction in either the intensity difference or phase sum quadrature.

Pooser, Raphael C.↗