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At least 379 records · Page 21

The genome of the polyextremophilic yeast, Naganishia friedmannii, reveals adaptations involved in stress response pathways, carbohydrate metabolism expansion, and a limited DNA repair repertoire

Here we report the draft genome sequence of Naganishia friedmannii (formerly Cryptococcus friedmannii) isolate, a Basidiomycota yeast commonly found in some of the most extreme environments of the Earth's cryosphere. We isolated N. friedmannii strain Llullensis from soils at 6000 m above sea level on Volcán Llullaillaco, Argentina. The genome was 22.2 Mb with 6251 identified protein coding genes. Proteins known to be associated with thermal, osmotic, and radiation stress were identified in the genome. Comparative analysis with seven other Naganishia genomes revealed unique features underlying its polyextremophilic lifestyle. Naganishia friedmannii showed an expansion of genes involved in breaking down plant-derived carbohydrates, supporting the hypothesis that it survives at high elevations by metabolizing wind-deposited organic matter. Surprisingly, many genes involved in cell-cycle checkpoints and DNA repair were missing, as in several other Naganishia species. This extensive loss may be adaptive in extreme environments prone to abiotic stress, where a high mutation rate could generate advantageous traits, and reduced cell-cycle control may allow for faster reproduction that would be advantageous for rapid growth during brief periods of soil wetting following rare snow events.

Vimercati, Lara↗

CMB power spectra and cosmological parameters from Planck PR4 with CamSpec

ABSTRACT We present angular power spectra and cosmological parameter constraints derived from the Planck PR4 (NPIPE) maps of the cosmic microwave background. NPIPE, released by the Planck Collaboration in 2020, is a new processing pipeline for producing calibrated frequency maps from Planck data. We have created new versions of the CamSpec likelihood using these maps and applied them to constrain the lambda cold dark matter (ΛCDM) model and single-parameter extensions. We find excellent consistency between NPIPE and the Planck 2018 maps at the parameter level, showing that the Planck cosmology is robust to substantial changes in the mapmaking. The lower noise of NPIPE leads to ~10 per cent tighter constraints, and we see both smaller error bars and a shift towards the ΛCDM values for beyond-ΛCDM parameters including ΩK and AL.

79 ASTRONOMY AND ASTROPHYSICS↗

The parameter-level performance of covariance matrix conditioning in cosmic microwave background data analyses

Empirical estimates of the band power covariance matrix are commonly used in cosmic microwave background (CMB) power spectrum analyses. While this approach easily captures correlations in the data, noise in the resulting covariance estimate can systematically bias the parameter fitting. Conditioning the estimated covariance matrix, by applying prior information on the shape of the eigenvectors, can reduce these biases and ensure the recovery of robust parameter constraints. In this work, we use simulations to benchmark the performance of four different conditioning schemes, motivated by contemporary CMB analyses. The simulated surveys measure the TT, TE, and EE power spectra over the angular multipole range 300 ≤ ℓ ≤ 3500 in Δℓ = 50 wide bins, for temperature map-noise levels of 10, 6.4, and $2\, \mu$K arcmin. We divide the survey data into N real = 30, 50, or 100 uniform subsets. We show the results of different conditioning schemes on the errors in the covariance estimate, and how these uncertainties on the covariance matrix propagate to the best-fitting parameters and parameter uncertainties. The most significant effect we find is an additional scatter in the best-fitting point, beyond what is expected from the data likelihood. For a minimal conditioning strategy, N real = 30, and a temperature map-noise level of 10$\, \mu$K arcmin, we find the uncertainty on the recovered best-fitting parameter to be ×1.3 larger than the apparent posterior width from the likelihood (×1.2 larger than the uncertainty when the true covariance is used). Stronger priors on the covariance matrix reduce the misestimation of parameter uncertainties to $\lt 1{{\ \rm per\ cent}}$. As expected, empirical estimates perform better with higher N real , ameliorating the adverse effects on parameter constraints.

79 ASTRONOMY AND ASTROPHYSICS↗

First observation of excited states in the 154 Ce 96 nucleus: Rigid rotation at Z = 58

We report new analysis of the data from measurements of γ radiation following spontaneous fission of 248 Cm and 252 Cf, performed using Eurogam2 and Gammashpere arrays, respectively, has revealed, for the first time, excited states in the neutron-rich nucleus, 154 Ce 96 . Using these fission data we have also improved uncertainties on γ-ray energies in the ground-state bands of several neutron-rich nuclei of the A≈150 mass region. The improved data provided precise systematics of the E exc (4+)/E exc (2+) ratio in the region, which indicates that in the Ce isotopic chain the rigid-rotation limit is reached at the neutron number N=96, two neutrons “later” than in the chain of Nd isotopes. The new results suggest the involvement of the proton 9/2 + [404] extruder orbital in generating nuclear deformation in the A≈150 region, analogous to the known role played by the neutron 11/2 – [505] extruder in this region. The catalytic-type action of both extruders is discussed.

73 NUCLEAR PHYSICS AND RADIATION PHYSICS↗

Centrality determination with a forward detector in the RHIC Beam Energy Scan

Recently, Chatterjee et al [1] used a hadronic transport model to estimate the resolution with which various experimental quantities select the impact parameter of relativistic heavy ion collisions at collision energies relevant to the Beam Energy Scan (BES) program at the Relativistic Heavy Ion Collider (RHIC). Measures based on particle multiplicity at forward rapidity were found to be significantly worse than those based on midrapidity multiplicity. Using the same model, we show that a slightly more sophisticated measure greatly improves the resolution based on forward rapidity particles; this improvement persists even when the model is filtered through a realistic simulation of a recent upgrade detector to the STAR experiment. Furthermore, these results highlight the importance of optimizing centrality measures based on particles detected at forward rapidity, especially for experimental studies that search for a critical point in the QCD phase diagram. Such measurements usually focus on proton multiplicity fluctuations at midrapidity, hence selecting events based on multiplicity at midrapidity raises the possibility of nontrivial autocorrelations.

73 NUCLEAR PHYSICS AND RADIATION PHYSICS↗

Test of Light-Lepton Universality in the Rates of Inclusive Semileptonic B-Meson Decays at Belle II

We present the first measurement of the ratio of branching fractions of inclusive semileptonic B -meson decays, R ( X e / μ ) = B ( B → X e ν ) / B ( B → X μ ν ) , a precision test of electron-muon universality, using data corresponding to 189 fb - 1 from electron-positron collisions collected with the Belle II detector. In events where the partner B meson is fully reconstructed, we use fits to the lepton momentum spectra above 1.3 GeV / c to obtain R ( X e / μ ) = 1.007 ± 0.009 ( stat ) ± 0.019 ( syst ) , which is the most precise lepton-universality test of its kind and agrees with the standard-model expectation.

72 PHYSICS OF ELEMENTARY PARTICLES AND FIELDS↗

Resonant inelastic X-ray scattering using a miniature dispersive Rowland refocusing spectrometer

X-ray absorption spectroscopy (XAS) beamlines worldwide are steadily increasing their emphasis on full photon-in/photon-out spectroscopies, such as resonant inelastic X-ray scattering (RIXS), resonant X-ray emission spectroscopy (RXES) and high energy resolution fluorescence detection XAS (HERFD-XAS). In such cases, each beamline must match the choice of emission spectrometer to the scientific mission of its users. Previous work has recently reported a miniature tender X-ray spectrometer using a dispersive Rowland refocusing (DRR) geometry that functions with high energy resolution even with a large X-ray spot size on the sample. This instrument has been used in the laboratory in multiple studies of non-resonant X-ray emission spectroscopy using a conventional X-ray tube, though only for preliminary measurements at a low-intensity microfocus synchrotron beamline. This paper reports an extensive study of the performance of a miniature DRR spectrometer at an unfocused wiggler beamline, where the incident monochromatic flux allows for resonant studies which are impossible in the laboratory. Here, the results support the broader use of the present design and also suggest that the DRR method with an unfocused beam could have important applications for materials with low radiation damage thresholds and that would not survive analysis on focused beamlines.

46 INSTRUMENTATION RELATED TO NUCLEAR SCIENCE AND ↗

Impact of Surface Recombination on Single-Event Charge Collection in an SOI Technology

Semiconductor–insulator interfaces play an important role in the reliability of integrated devices; however, the impact of these interfaces on the physical mechanisms related to single-event effects has not been previously reported. We present experimental data that demonstrate that single-event charge collection can be impacted by changes in interface quality. The experimental data, combined with simulations, show that single-event response may depend on surface recombination at interface defects. The effect depends on strike location and increases with increasing linear energy transfer (LET). Surface recombination can affect single-event charge collection for interfaces with a surface recombination velocity (SRV) of 1000 cm/s and is a dominant charge collection mechanism with SRV >10 5 cm/s.

42 ENGINEERING↗

Real-Time, Adaptive Radiological Anomaly Detection and Isotope Identification Using Non-Negative Matrix Factorization

Spectroscopic anomaly detection and isotope identification algorithms are integral components in nuclear nonproliferation applications such as search operations. The task is especially challenging in the case of mobile detector systems because the observed gamma-ray background changes more than for a static detector system, and a pretrained background model can easily find itself out of domain. The result is that algorithms may exceed their intended false alarm rate or sacrifice detection sensitivity to maintain the desired false alarm rate. Non-negative matrix factorization (NMF) is a powerful tool for spectral anomaly detection and identification, but, like many similar algorithms that rely on data-driven background models, in its conventional implementation, it is unable to update in real time to account for environmental changes that affect the background spectroscopic signature. Here, we have developed a novel NMF-based algorithm that periodically updates its background model to accommodate changing environmental conditions. The adaptive NMF algorithm involves fewer assumptions about its environment, making it more generalizable than existing NMF-based methods while maintaining or exceeding detection performance on simulated and real-world datasets.

Anomaly detection↗

Phase evolution during conventional and reactive flash sintering of (Mg,Ni,Co,Cu,Zn)O via in situ X-ray diffraction

Reactive flash sintering (RFS) enables the simultaneous synthesis and sintering of ceramics and has been shown to affect the reaction pathway of different materials. Herein, in situ synchrotron X-ray diffraction (XRD) is used to investigate the (Mg,Ni,Co,Cu,Zn)O entropy-stabilized oxide formation during: (i) conventional heating and (ii) RFS under current rate-controlled mode. The same reaction pathway is verified in both instances: the starting rock-salt (RS), spinel (Co 3 O 4 ), tenorite (CuO), and wurtzite (ZnO) phases transform into a single RS phase with a (1 1 1) to (2 0 0) intensity ratio of 0.67, consistent with a random distribution of the cations into the structure. Pt lattice peak shift from the XRD patterns is used as standard to monitor the sample surface temperature, revealing a strong endothermic reaction during the RS single-phase formation (Pt peaks shift toward higher angles while increasing sample temperature/current density). Furthermore, in RFS, the single-phase RS structure is formed in just 60 s at a furnace temperature of 600°C and a current rate of 220 mA mm -2 /min. Therefore, RFS greatly accelerates the synthesis of (Mg,Ni,Co,Cu,Zn)O, however, it does not play a role in the reaction pathway for this material formation.

36 MATERIALS SCIENCE↗

Let’s Unleash the Network Judgment: A Self-Supervised Approach for Cloud Image Analysis

Accurate cloud type identification and coverage analysis are crucial in understanding the Earth’s radiative budget. Traditional computer vision methods rely on low-level visual features of clouds for estimating cloud coverage or sky conditions. Several handcrafted approaches have been proposed; however, scope for improvement still exists. Newer deep neural networks (DNNs) have demonstrated superior performance for cloud segmentation and categorization. These methods, however, need expert engineering intervention in the preprocessing steps—in the traditional methods—or human assistance in assigning cloud or clear sky labels to a pixel for training DNNs. Such human mediation imposes considerable time and labor costs. We present the application of a new self-supervised learning approach to autonomously extract relevant features from sky images captured by ground-based cameras, for the classification and segmentation of clouds. We evaluate a joint embedding architecture that uses self-knowledge distillation plus regularization. We use two datasets to demonstrate the network’s ability to classify and segment sky images—one with ~85,000 images collected from our ground-based camera and another with 400 labeled images from the WSISEG database. We find that this approach can discriminate full-sky images based on cloud coverage, diurnal variation, and cloud base height. Additionally, it semantically segments the cloud areas without labels. The approach shows competitive performance in all tested tasks, suggesting a new alternative for cloud characterization.

54 ENVIRONMENTAL SCIENCES↗

QED with the electron as a very small black-hole-like object

We pursue a simple semi-classical particle-based picture of QED in which the electron is assumed to contain a point massless and chargeless core that interacts with the electromagnetic vacuum in ways that are not dissimilar to the manner in which small black holes may interact with photons. Modifications are made to obtain known properties of the electron including the presence of rest energy, Lamb shift, magnetic moments (both free and bound), charge, Larmor emission, and vacuum polarization. The present study does not provide proofs but is rather an attempt to reverse-engineer the photon-electron and black-hole-electron interaction properties needed to match experimental observations. The ease by which many QED observables can be reproduced suggests further study of the presented framework may be warranted. Future detailed analysis of the exchange of long wavelength Hawking radiation between a pair of small black holes will be of particular interest.

72 PHYSICS OF ELEMENTARY PARTICLES AND FIELDS↗

Fluence Capsules for the SAM-2 Experiment MPO# 00239221/SOW-17494, Rev. 0

The statement of work (SOW) applies to the fabrication and analysis of flux wire capsules that will be used in the SAM-2 experiment. This experiment is a drop-in design slated for irradiation in the Advanced Test Reactor (ATR) at Idaho National Laboratory (INL). The 8 neutron fluence capsules will be used to determine the neutron exposure that the specimens have received. For Task 1 Pacific Northwest National Laboratory (PNNL) will prepare eight (8) neutron fluence monitors for irradiation in the ATR. Task 2 will involve analysis port-irradiation; the monitors will be returned to PNNL for analysis in FY21 after irradiation. The analysis report will include the neutron fluences and radiation damage calculations for all irradiated positions in the experiment.

11 NUCLEAR FUEL CYCLE AND FUEL MATERIALS↗

EMP, Attachment 1: Sampling and Analysis Plan (Rev.1)

This Sampling and Analysis Plan (SAP) is written for the Environmental Radiation Task activities related to radioactive air emissions (stack) monitoring and environmental radiological ambient air surveillance of Pacific Northwest National Laboratory (PNNL) operations at the PNNL-Richland campus and PNNL-Sequim campus. PNNL is a U.S. Department of Energy Office of Science laboratory in Richland, Washington. This plan is an attachment to PNNL’s Environmental Radiological Air Monitoring Plan (EMP) (PNNL-20919) and addresses a discrete, vital subject area that is subject to revision independent of the main text of the EMP document. This SAP provides the requirements for planning sampling events and the requirements imposed on the services provided by the analytical laboratory to the PNNL Environmental Radiation Task.

40 CFR 61 Subpart H↗

Final Technical Report - Rapid Surface Microanalysis using a Low Temperature Plasma

This project focused on improving our current understanding and scientific knowledge in the area of plasma-surface interactions and plasma assisted material synthesis related to advanced microelectronics and nanotechnology. Current challenges include: controlling the interaction of Low Temperature Plasma (LTP) with a single layer of atoms to manufacture integrated circuits, continued miniaturization of integrated circuits, LTP processing of material surfaces and thin films to enable industrial scale fabrication of advanced microelectronics, synthesis of new materials, nanomaterials, nanotubes, and complex materials, Technology developed in this subtopic is of value to either (i) enable scans of surfaces (~1 sq. cm area) using various microscopies (electron, optical, other) at high resolution (micron or sub-micron resolution) rapidly (hours or days rather than years to complete a high-resolution scan of such a large surface area), or (ii) enable scans of surfaces (~1 sq. cm area) using various microscopies (electron, optical, other) at relatively low resolution rapidly, then apply algorithms to select spots for micron-scale imaging. Sputtering occurs when particles of a solid material are ejected from its surface by energetic particles from a plasma. While the degradation of the solid material and the subsequent deposition of the ejected material onto vulnerable surfaces are the usual subjects of sputtering studies, plasma science has yet to be combined with sputtering to create new diagnostics devices and systems. Small changes in the design of the plasma discharge device make it possible to create broad plasma beams for rapid scanning or small plasma beams to obtain the distribution of ejected elements with micron resolution. In the high-resolution use, the ion flux is extracted from the gas-discharge plasma and focused by a spherical emission surface to micron sizes onto the target specimen, providing very local sputtering and local elemental analysis. We call this “self-focusing”. The radiation from the excited and ionized sputtered atoms is recorded by a spectrometer through a window and fiberglass cable and analyzed with standard software packages used for optical glow discharge spectroscopy. Computer simulations of beam formation were used to verify and optimize the designs to be tested. A prototype was designed, constructed, and used to start experiments of beam formation.

70 PLASMA PHYSICS AND FUSION TECHNOLOGY↗

Clustering of DESI galaxies split by thermal Sunyaev-Zeldovich effect

The thermal Sunyaev-Zeldovich (tSZ) effect is associated with galaxy clusters - extremely large and dense structures tracing the dark matter with a higher bias than isolated galaxies. We propose to use the tSZ data to separate galaxies from redshift surveys into distinct subpopulations corresponding to different densities and biases independently of the redshift survey systematics. Leveraging the information from different environments, as in density-split and density-marked clustering, is known to tighten the constraints on cosmological parameters, like $\Omega_m$, $\sigma_8$ and neutrino mass. We use data from the Dark Energy Spectroscopic Instrument (DESI) and the Atacama Cosmology Telescope (ACT) in their region of overlap to demonstrate informative tSZ splitting of Luminous Red Galaxies (LRGs). We discover a significant increase in the large-scale clustering of DESI LRGs corresponding to detections starting from 1-2 sigma in the ACT DR6 + Planck tSZ Compton-$y$ map, below the cluster candidate threshold (4 sigma). We also find that such galaxies have higher line-of-sight coordinate (and velocity) dispersions and a higher number of close neighbors than both the full sample and near-zero tSZ regions. We produce simple simulations of tSZ maps that are intrinsically consistent with galaxy catalogs and do not include systematic effects, and find a similar pattern of large-scale clustering enhancement with tSZ effect significance. Moreover, we observe that this relative bias pattern remains largely unchanged with variations in the galaxy-halo connection model in our simulations. This is promising for future cosmological inference from tSZ-split clustering with semi-analytical models. Thus, we demonstrate that valuable cosmological information is present in the lower signal-to-noise regions of the thermal Sunyaev-Zeldovich map, extending far beyond the individual cluster candidates.

Astronomy data analysis↗

A Simulation-based Method for Correcting Mode Coupling in CMB Angular Power Spectra

Modern cosmic microwave background (CMB) analysis pipelines regularly employ complex time-domain filters, beam models, masking, and other techniques during the production of sky maps and their corresponding angular power spectra. However, these processes can generate couplings between multipoles from the same spectrum and from different spectra, in addition to the typical power attenuation. Within the context of pseudo-C ℓ based, MASTER-style analyses, the net effect of the time-domain filtering is commonly approximated by a multiplicative transfer function, F ℓ , that can fail to capture mode mixing and is dependent on the spectrum of the signal. To address these shortcomings, we have developed a simulation-based spectral correction approach that constructs a two-dimensional transfer matrix, ${J}_{{\ell }{\ell }^{\prime} }$, which contains information about mode mixing in addition to mode attenuation. We demonstrate the application of this approach on data from the first flight of the Spider balloon-borne CMB experiment.

79 ASTRONOMY AND ASTROPHYSICS↗

A Search for Photons with Energies Above 2 × 10 17 eV Using Hybrid Data from the Low-Energy Extensions of the Pierre Auger Observatory

Ultra-high-energy photons with energies exceeding 10 17 eV offer a wealth of connections to different aspects of cosmic-ray astrophysics as well as to gamma-ray and neutrino astronomy. The recent observations of photons with energies in the 10 15 eV range further motivate searches for even higher-energy photons. In this paper, we present a search for photons with energies exceeding 2 × 10 17 eV using about 5.5 yr of hybrid data from the low-energy extensions of the Pierre Auger Observatory. The upper limits on the integral photon flux derived here are the most stringent ones to date in the energy region between 10 17 and 10 18 eV.

79 ASTRONOMY AND ASTROPHYSICS↗