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At least 289 records · Page 16

RHSEG and Subdue: Background and Preliminary Approach for Combining these Technologies for Enhanced Image Data Analysis, Mining and Knowledge Discovery

Under a project recently selected for funding by NASA's Science Mission Directorate under the Applied Information Systems Research (AISR) program, Tilton and Cook will design and implement the integration of the Subdue graph based knowledge discovery system, developed at the University of Texas Arlington and Washington State University, with image segmentation hierarchies produced by the RHSEG software, developed at NASA GSFC, and perform pilot demonstration studies of data analysis, mining and knowledge discovery on NASA data. Subdue represents a method for discovering substructures in structural databases. Subdue is devised for general-purpose automated discovery, concept learning, and hierarchical clustering, with or without domain knowledge. Subdue was developed by Cook and her colleague, Lawrence B. Holder. For Subdue to be effective in finding patterns in imagery data, the data must be abstracted up from the pixel domain. An appropriate abstraction of imagery data is a segmentation hierarchy: a set of several segmentations of the same image at different levels of detail in which the segmentations at coarser levels of detail can be produced from simple merges of regions at finer levels of detail. The RHSEG program, a recursive approximation to a Hierarchical Segmentation approach (HSEG), can produce segmentation hierarchies quickly and effectively for a wide variety of images. RHSEG and HSEG were developed at NASA GSFC by Tilton. In this presentation we provide background on the RHSEG and Subdue technologies and present a preliminary analysis on how RHSEG and Subdue may be combined to enhance image data analysis, mining and knowledge discovery.

Tilton, James C.↗

Biophysical Characterization of Iron-Sulfur Proteins

Iron-sulfur proteins are primordial catalysts and biological electron carriers that today drive major metabolic pathways across all forms of life. They can access a diversity of oxidation states and can mediate electron transfer over an extended range of reduction potentials spanning more than 1 V. Depending on the protein micro-environment and geometry of ligand, co-ordination the iron-sulfur clusters can occur in different forms [2Fe-2S], [3Fe-4S], HiPIP [4Fe-4S], and [4Fe-4S]. There are several spectroscopic methods available to characterize the composition and electronic configuration of the iron-sulfur clusters, such as optical methods and electron paramagnetic resonance. This paper presents the protocols used to characterize the metal center of Coiled-Coil Iron-Sulfur (CCIS), an artificial metalloprotein containing one [4Fe-4S] cluster. It is expected that these protocols will be of general utility for other iron-sulfur proteins.

Iron-sulfur proteins↗

Galactic Starburst NGC 3603 from X-Rays to Radio

NGC 3603 is the most massive and luminous visible starburst region in the Galaxy. We present the first Chandra/ACIS-I X-ray image and spectra of this dense, exotic object, accompanied by deep cm-wavelength ATCA radio image at similar or less than 1 inch spatial resolution, and HST/ground-based optical data. At the S/N greater than 3 level, Chandra detects several hundred X-ray point sources (compared to the 3 distinct sources seen by ROSAT). At least 40 of these sources are definitely associated with optically identified cluster O and WR type members, but most are not. A diffuse X-ray component is also seen out to approximately 2 feet (4 pc) form the center, probably arising mainly from the large number of merging/colliding hot stellar winds and/or numerous faint cluster sources. The point-source X-ray fluxes generally increase with increasing bolometric brightnesses of the member O/WR stars, but with very large scatter. Some exceptionally bright stellar X-ray sources may be colliding wind binaries. The radio image shows (1) two resolved sources, one definitely non-thermal, in the cluster core near where the X-ray/optically brightest stars with the strongest stellar winds are located, (2) emission from all three known proplyd-like objects (with thermal and non-thermal components, and (3) many thermal sources in the peripheral regions of triggered star-formation. Overall, NGC 3603 appears to be a somewhat younger and hotter, scaled-down version of typical starbursts found in other galaxies.

Moffat, A. F. J.↗

MB-Fit: Software infrastructure for data-driven many-body potential energy functions

Many-body potential energy functions (MB-PEFs), which integrate data-driven representations of many-body short-range quantum mechanical interactions with physics-based representations of many-body polarization and long-range interactions, have recently been shown to provide high accuracy in the description of molecular interactions from the gas to the condensed phase. Here, we present MB-Fit, a software infrastructure for the automated development of MB-PEFs for generic molecules within the TTM-nrg (Thole-type model energy) and MB-nrg (many-body energy) theoretical frameworks. Besides providing all the necessary computational tools for generating TTM-nrg and MB-nrg PEFs, MB-Fit provides a seamless interface with the MBX software, a many-body energy and force calculator for computer simulations. Given the demonstrated accuracy of the MB-PEFs, particularly within the MB-nrg framework, we believe that MB-Fit will enable routine predictive computer simulations of generic (small) molecules in the gas, liquid, and solid phases, including, but not limited to, the modeling of quantum isomeric equilibria in molecular clusters, solvation processes, molecular crystals, and phase diagrams.

37 INORGANIC, ORGANIC, PHYSICAL, AND ANALYTICAL CH↗

Improving galaxy cluster selection with the outskirt stellar mass of galaxies

The number density and redshift evolution of optically selected galaxy clusters offer an independent measurement of the amplitude of matter fluctuations, 𝑆 8 . However, recent results have shown that clusters chosen by the redMaPPer algorithm show richness-dependent biases that affect the weak lensing signals and number densities of clusters, increasing uncertainty in the cluster mass calibration and reducing their constraining power. Here, in this work, we evaluate an alternative cluster proxy, outskirt stellar mass, 𝑀 out , defined as the total stellar mass within a [50, 100] kpc envelope centered on a massive galaxy. This proxy exhibits scatter comparable to redMaPPer richness, 𝜆, but is less likely to be subject to projection effects. We compare the Dark Energy Survey Year 3 redMaPPer cluster catalog with a 𝑀 out selected cluster sample from the Hyper-Suprime Camera survey. We use weak lensing measurements to quantify and compare the scatter of 𝑀 out and 𝜆 with halo mass. Our results show 𝑀 out has a scatter consistent with 𝜆, with a similar halo mass dependence, and that both proxies contain unique information about the underlying halo mass. We find 𝜆-selected samples introduce features into the measured Δ⁢Σ signal that are not well fit by a log-normal scatter only model, absent in 𝑀 out selected samples. Our findings suggest that 𝑀 out offers an alternative for cluster selection with more easily calibrated selection biases, at least at the generally lower richnesses probed here. Combining both proxies may yield a mass proxy with a lower scatter and more tractable selection biases, enabling the use of lower mass clusters in cosmology. Finally, we find the scatter and slope in the 𝜆 −𝑀 out scaling relation to be 0.49 ±0.02 and 0.38 ±0.09.

79 ASTRONOMY AND ASTROPHYSICS↗

Observations of the Bright Star in the Globular Cluster 47 Tucanae (NGC 104)

The Bright Star in the globular cluster 47 Tucanae (NGC 104) is a post-asymptotic giant branch (post-AGB) star of spectral type B8 III. The ultraviolet spectra of late-B stars exhibit myriad absorption features, many due to species unobservable from the ground. The Bright Star thus represents a unique window into the chemistry of 47 Tuc. We have analyzed observations obtained with the Far Ultraviolet Spectroscopic Explorer, the Cosmic Origins Spectrograph aboard the Hubble Space Telescope, and the Magellan Inamori Kyocera Echelle Spectrograph on the Magellan Telescope. By fitting these data with synthetic spectra, we determine various stellar parameters (T {sub eff} = 10,850 ± 250 K, logg=2.20±0.13) and the photospheric abundances of 26 elements, including Ne, P, Cl, Ga, Pd, In, Sn, Hg, and Pb, which have not previously been published for this cluster. Abundances of intermediate-mass elements (Mg through Ga) generally scale with Fe, while the heaviest elements (Pd through Pb) have roughly solar abundances. Its low C/O ratio indicates that the star did not undergo third dredge-up and suggests that its heavy elements were made by a previous generation of stars. If so, this pattern should be present throughout the cluster, not just in this star. Stellar-evolution models suggest that the Bright Star is powered by a He-burning shell, having left the AGB during or immediately after a thermal pulse. Its mass (0.54 ± 0.16M {sub ⊙}) implies that single stars in 47 Tuc lose 0.1–0.2 M {sub ⊙} on the AGB, only slightly less than they lose on the red giant branch.

37 INORGANIC, ORGANIC, PHYSICAL, AND ANALYTICAL CH↗

Abundance inhomogeneities and atmospheric structure in CN-bimodal globular cluster giants

It has been suggested by several authors that the sodium and aluminum abundance variations correlating with CN-band strength, frequently observed in CN-bimodal globular cluster giants, could be spurious manifestations of different temperature structures in the 'CN-strong' and 'CN-weak' stars, caused by different molecular line blanketing related to the C, N, and O trio. For stellar parameters generally appropriate to giants in the intermediate metallicity CN-bimodal cluster M4, we demonstrate through new model atmosphere calculations, employing opacity sampling and spherical geometry, that the observed abundance anomalies cannot be the result of atmospheric temperature structure. Our results using spherical geometry are compared to identical calculations performed with plane-parallel geometry: the effects of atmospheric extension on derived abundances for all lines considered amount to less than 0.1 dex.

Drake, Jeremy J.↗

The impact of anisotropic redshift distributions on angular clustering

A leading way to constrain physical theories from cosmological observations is to test their predictions for the angular clustering statistics of matter tracers, a technique that is set to become ever more central with the next generation of large imaging surveys. Interpretation of this clustering requires knowledge of the projection kernel, or the redshift distribution of the sources, and the typical assumption is an isotropic redshift distribution for the objects. However, variations in the kernel are expected across the survey footprint due to photometric variations and residual observational systematic effects. Here, we develop the formalism for anisotropic projection and present several limiting cases that elucidate the key aspects. We quantify the impact of anisotropies in the redshift distribution on a general class of angular two-point statistics. In particular, we identify a mode-coupling effect that can add power to auto-correlations, including galaxy clustering and cosmic shear, and remove it from certain cross-correlations. If the projection anisotropy is primarily at large scales, the mode-coupling depends upon its variance as a function of redshift; furthermore, it is often of similar shape to the signal. In contrast, the cross-correlation of a field whose selection function is anisotropic with another one featuring no such variations — such as CMB lensing — is immune to these effects. We discuss explicitly several special cases of the general formalism including galaxy clustering, galaxy-galaxy lensing, cosmic shear and cross-correlations with CMB lensing, and publicly release a code to compute the biases.

79 ASTRONOMY AND ASTROPHYSICS↗

Baryonic dark clusters in galactic halos and their observable consequences

We consider the possibility that approximately 10% of the mass of a typical galaxy halo is in the form of massive (approximately 10(exp 7) solar masses), compact (escape speeds approximately 100 km/s) baryonic clusters made of neutron stars (approximately 10% by mass), black holes (less than or approximately equal to 1%) and brown dwarfs, asteroids, and other low-mass debris (approximately 90%). These general properties are consistent with several different observational and phenomenological constraints on cluster properties subject to the condition that neutron stars comprise approximately 1% of the total halo mass. Such compact, dark clusters could be the sites of a variety of collisional phenomena involving neutron stars. We find that integrated out to the Hubble distance approximately one neutron star-neutron star or neutron star-black hole collision occurs daily. Of order 0.1-1 asteroid-neutron star collisions may also happen daily in the halo of the Milky Way if there is roughly equal cluster mass per logarithmic particle mass interval between asteroids and brown dwarfs. These event rates are comparable to the frequency of gamma-ray burst detections by the Burst and Transient Source Experiment (BATSE) on the Compton Observatory, implying that if dark halo clusters are the sites of most gamma-ray bursts, perhaps approximately 90% of all bursts are extragalactic, but approximately 10% are galactic. It is possible that dark clusters of the kind discussed here could be detected directly by the Infrared Space Observatory (ISO) or Space Infrared Telescope Facility (SIRTF). If the clusters considered in this paper exist, they should produce spatially correlated gravitational microlensing of stars in the Large Magellanic Cloud (LMC). If 10% of the halo is in the form of dark baryonic clusters, and the remaining 90% is in brown dwarfs and other dark objects which are either unclustered or collected into low-mass clusters, then we expect that two events within approximately 1 min of one another are likely to be seen after a total of order 20-30 microlenses have been detected.

Wasserman, Ira↗

Galaxy-multiplet clustering from DESI DR2

We present an efficient estimator for higher-order galaxy clustering using small groups of nearby galaxies, or multiplets. Using the Luminous Red Galaxy (LRG) sample from the Dark Energy Spectroscopic Instrument (DESI) Data Release 2, we identify galaxy multiplets as discrete objects and measure their cross-correlations with the general galaxy field. Our results show that the multiplets exhibit stronger clustering bias as they trace more massive dark matter halos than individual galaxies. When comparing the observed clustering statistics with the mock catalogs generated from the N-body simulation AbacusSummit, we find that the mocks underpredict multiplet clustering despite reproducing the galaxy two-point auto-correlation reasonably well. This discrepancy indicates that the standard Halo Occupation Distribution (HOD) model is insufficient to describe the properties of galaxy multiplets, revealing the greater constraining power of this higher-order statistic on galaxy-halo connection and the possibility that multiplets are specific to additional assembly bias. We demonstrate that incorporating secondary biases into the HOD model improves agreement with the observed multiplet statistics, specifically by allowing galaxies to preferentially occupy halos in denser environments. Our results highlight the potential of utilizing multiplet clustering, beyond traditional two-point correlation measurements, to break degeneracies in models describing the galaxy-dark matter connection.

cosmology↗

Reducing model error using optimized galaxy selection: weak lensing cluster mass estimation

Galaxy clusters are one of the most powerful probes to study extensions of General Relativity and the Standard Cosmological Model. Upcoming surveys like the Vera Rubin Observatory’s Legacy Survey of Space and Time are expected to revolutionise the field, by enabling the analysis of cluster samples of unprecedented size and quality. To reach this era of high-precision cluster cosmology, the mitigation of sources of systematic error is crucial. A particularly important challenge is bias in cluster mass measurements induced by the mismodelling of photometric redshift estimates of source galaxies. This work proposes a method to optimise the source sample selection in cluster weak lensing analyses drawn from wide-field survey lensing catalogs to reduce the bias on reconstructed cluster masses. We use a combinatorial optimisation scheme and methods from variational inference to select galaxies in latent space to produce a probabilistic galaxy source sample catalog for highly accurate cluster mass estimation. We show that our method reduces the critical surface mass density Σ crit relative modelling bias on the 60-70% level, while maintaining up to 90% of galaxies. We highlight that our methodology has applications beyond cluster mass estimation as an approach to jointly combine galaxy selection and model inference under sources of systematics.

79 ASTRONOMY AND ASTROPHYSICS↗

The environment of Lyman break analogues (ELBA) survey: star-forming galaxies in small groups

ABSTRACT The environment of Lyman break analogues survey is an imaging survey of 33 deg2 of the southern sky. The survey was observed in u, g, r, and i bands with the Dark Energy Camera on the Blanco telescope. The main goal of this project is to investigate the environment of Lyman break analogues (LBAs) low-redshift (z ∼0.2) galaxies that are remarkably similar to typical star-forming galaxies at z ∼ 3. We explore whether the environment has any influence on the observed properties of these galaxies, providing valuable insight on the formation and evolution of galaxies over cosmic time. Using the nearest neighbour method, we measure the local density of each object ranging from small to large scales (clusters of galaxies). Comparing the environment around LBAs with that of the general galaxy population in the field, we conclude that LBAs, on average, populate denser regions at small scales, but are located in similar environment to other star-forming galaxies at larger cluster-like scales. This offers evidence that nearby encounters such as mergers may influence the star formation activity in LBAs, before infall on to larger galaxy clusters. We interpret this as an indication of galaxy pre-processing, in agreement with theoretical expectations for galaxies at z ∼ 2–3 where the gravitational interactions are more intense in early formation processes of these objects.

79 ASTRONOMY AND ASTROPHYSICS↗

Heterologous synthesis of the complex homometallic cores of nitrogenase P- and M-clusters in Escherichia coli

Nitrogenase is an active target of heterologous expression because of its importance for areas related to agronomy, energy, and environment. One major hurdle for expressing an active Mo-nitrogenase in Escherichia coli is to generate the complex metalloclusters (P- and M-clusters) within this enzyme, which involves some highly unique bioinorganic chemistry/metalloenzyme biochemistry that is not generally dealt with in the heterologous expression of proteins via synthetic biology; in particular, the heterologous synthesis of the homometallic P-cluster ([Fe 8 S 7 ]) and M-cluster core (or L-cluster; [Fe 8 S 9 C]) on their respective protein scaffolds, which represents two crucial checkpoints along the biosynthetic pathway of a complete nitrogenase, has yet to be demonstrated by biochemical and spectroscopic analyses of purified metalloproteins. Here, we report the heterologous formation of a P-cluster-containing NifDK protein upon coexpression of Azotobacter vinelandii nifD, nifK, nifH, nifM, and nifZ genes, and that of an L-cluster-containing NifB protein upon coexpression of Methanosarcina acetivorans nifB, nifS, and nifU genes alongside the A. vinelandii fdxN gene, in E. coli. Our metal content, activity, EPR, and XAS/EXAFS data provide conclusive evidence for the successful synthesis of P- and L-clusters in a nondiazotrophic host, thereby highlighting the effectiveness of our metallocentric, divide-and-conquer approach that individually tackles the key events of nitrogenase biosynthesis prior to piecing them together into a complete pathway for the heterologous expression of nitrogenase. As such, this work paves the way for the transgenic expression of an active nitrogenase while providing an effective tool for further tackling the biosynthetic mechanism of this important metalloenzyme.

59 BASIC BIOLOGICAL SCIENCES↗

Environmental predictors of pulmonary nontuberculous mycobacteria (NTM) sputum positivity among persons with cystic fibrosis in the state of Florida

Nontuberculous mycobacteria (NTM) are opportunistic human pathogens that are commonly found in soil and water, and exposure to these organisms may cause pulmonary nontuberculous mycobacterial disease. Persons with cystic fibrosis (CF) are at high risk for developing pulmonary NTM infections, and studies have shown that prolonged exposure to certain environments can increase the risk of pulmonary NTM. It is therefore important to determine the risk associated with different geographic areas. Using annualized registry data obtained from the Cystic Fibrosis Foundation Patient Registry for 2010 through 2017, we conducted a geospatial analysis of NTM infections among persons with CF in Florida. A Bernoulli model in SaTScan was used to identify clustering of ZIP codes with higher than expected numbers of NTM culture positive individuals. Generalized linear mixed models with a binomial distribution were used to test the association of environmental variables and NTM culture positivity. We identified a significant cluster of M . abscessus and predictors of NTM sputum positivity, including annual precipitation and soil mineral levels.

59 BASIC BIOLOGICAL SCIENCES↗

Neon Cluster Formation and Phase Separation during White Dwarf Cooling

Recent observations of Galactic white dwarfs (WDs) with Gaia suggest there is a population of massive crystallizing WDs exhibiting anomalous cooling—the Q branch. While single-particle 22 Ne sedimentation has long been considered a possible heat source, recent work suggests that 22 Ne must separate into clusters, enhancing diffusion, in order for sedimentation to provide heating on the observed timescale. We show definitively that 22 Ne cannot separate to form clusters in C/O WDs using molecular dynamics simulations, and we further present a general C/O/Ne phase diagram showing that strong 22Ne enrichment is not achievable for 22 Ne abundance ≲30%. Here, we conclude that the anomalous heating cannot be due to 22Ne cluster sedimentation and that Q branch WDs may have an unusual composition, possibly rich with heavier elements.

79 ASTRONOMY AND ASTROPHYSICS↗

Can mesoscale models capture the effect from cluster wakes offshore?

Long wakes from offshore wind turbine clusters can extend tens of kilometers downstream, affecting the wind resource of a large area. Given the ability of mesoscale numerical weather prediction models to capture important atmospheric phenomena and mechanisms relevant to wake evolution, they are often used to simulate wakes behind large wind turbine clusters and their impact over a wider region. Yet, uncertainty persists regarding the accuracy of representing cluster wakes via mesoscale models and their wind turbine parameterizations. Here, we evaluate the accuracy of the Fitch wind farm parameterization in the Weather Research and Forecasting model in capturing cluster-wake effects using two different options to represent turbulent mixing in the planetary boundary layer. To this end, we compare operational data from an offshore wind farm in the North Sea that is fully or partially waked by an upstream array against high-resolution mesoscale simulations. In general, we find that mesoscale models accurately represent the effect of cluster wakes on front-row turbines of a downstream wind farm. However, the same models may not accurately capture cluster-wake effects on an entire downstream wind farm, due to misrepresenting internal-wake effects.

17 WIND ENERGY↗

Morphological descriptors of nanoparticles: The link between atomistic structures and x-ray absorption spectra

Understanding and quantifying the morphology of nanoparticles are essential for linking their atomic structure to diverse applications and verifying theoretical models. While experimental information on the structure of nanoparticles in the size range below ∼5 nm can be extracted from x-ray absorption spectroscopy using a small number of descriptors—most commonly coordination numbers—developing an understanding of morphology descriptors from experimental data remains a challenge. Here, in this study, we introduce NanoGene, a genetic algorithm-based method for generating structurally diverse nanoparticle models guided by user-defined descriptors. We establish correlations among structural, size-related, and morphological descriptors and demonstrate how experimentally accessible parameters, such as coordination numbers, can be leveraged to infer otherwise inaccessible ones, such as the generalized coordination number or particle oblateness. Principal component and clustering analyses reveal the relative importance of descriptors, with the number of atoms emerging as a key discriminant of the nanoparticle structure. By providing both the methodology and an extensive dataset of nanoparticle geometries, this work offers a practical foundation for descriptor-based analysis and interpretation of experimental observations, bridging the gap between local atomic coordinates and global morphological characterization.

77 NANOSCIENCE AND NANOTECHNOLOGY↗

Subcritical Multiplication Ex-Core Calculations with Shift

This report details the development and testing of Virtual Environment for Reactor Applications (VERA) as applied to full core subcritical multiplication ex-core calculations with Shift. The limiting factor in being able to run these detector calculations with Monte Carlo is the amount of computational memory used by a fully-loaded full core problem. The main development features added to VERA in this effort were enabling source biasing and separable weight windows and integrating multithreading in Shift. With these capabilities, a subcritical multiplication detector response calculation on a full core Watts Bar Nuclear Plant Unit 1 (WBN1) ex-core model was successfully run on a moderately sized computing cluster.

22 GENERAL STUDIES OF NUCLEAR REACTORS↗