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At least 253 records · Page 14

A genomic regulatory network for development

Development of the body plan is controlled by large networks of regulatory genes. A gene regulatory network that controls the specification of endoderm and mesoderm in the sea urchin embryo is summarized here. The network was derived from large-scale perturbation analyses, in combination with computational methodologies, genomic data, cis-regulatory analysis, and molecular embryology. The network contains over 40 genes at present, and each node can be directly verified at the DNA sequence level by cis-regulatory analysis. Its architecture reveals specific and general aspects of development, such as how given cells generate their ordained fates in the embryo and why the process moves inexorably forward in developmental time.

Non-NASA Center↗

Systems Maintenance Automated Repair Tasks (SMART)

SMART is a uniform automated discrepancy analysis and repair-authoring platform that improves technical accuracy and timely delivery of repair procedures for a given discrepancy (see figure a). SMART will minimize data errors, create uniform repair processes, and enhance the existing knowledge base of engineering repair processes. This innovation is the first tool developed that links the hardware specification requirements with the actual repair methods, sequences, and required equipment. SMART is flexibly designed to be useable by multiple engineering groups requiring decision analysis, and by any work authorization and disposition platform (see figure b). The organizational logic creates the link between specification requirements of the hardware, and specific procedures required to repair discrepancies. The first segment in the SMART process uses a decision analysis tree to define all the permutations between component/ subcomponent/discrepancy/repair on the hardware. The second segment uses a repair matrix to define what the steps and sequences are for any repair defined in the decision tree. This segment also allows for the selection of specific steps from multivariable steps. SMART will also be able to interface with outside databases and to store information from them to be inserted into the repair-procedure document. Some of the steps will be identified as optional, and would only be used based on the location and the current configuration of the hardware. The output from this analysis would be sent to a work authoring system in the form of a predefined sequence of steps containing required actions, tools, parts, materials, certifications, and specific requirements controlling quality, functional requirements, and limitations.

Schuh, Joseph↗

The Pre-He White Dwarfs in Eclipsing Binaries. II. WASP 0843–11

We present the Transiting Exoplanet Survey Satellite (TESS) photometry and our high-resolution spectra of the EL CVn–type star 1SWASP J084356.46–113327.5 (WASP 0843–11), which consists of an F-type main-sequence (MS) star and a hotter low-mass helium white dwarf precursor (pre-He WD). In a spectral analysis, double-lined radial velocities (RVs) were obtained for the first time. From a simultaneous analysis of the TESS light and RV curves, the masses, radii, and temperatures of each component were determined to be M {sub 1} = 1.733 ± 0.031 M {sub ⊙}, M {sub 2} = 0.220 ± 0.008 M {sub ⊙}, R {sub 1} = 2.094 ± 0.013 R {sub ⊙}, R {sub 2} = 0.331 ± 0.003 R {sub ⊙}, T {sub 1} = 6960 ± 120 K, and T {sub 2} =9870 ± 310 K, respectively. According to their physical properties, the primary and secondary stars are located on the instability strips of δ Sct/γ Dor hybrids and extremely low-mass WDs, respectively. We applied multiple frequency analyses to the residual light curve after subtracting the binarity effects and detected a total of four independent frequencies. A frequency of f {sub 3} = 1.6356 day{sup −1} in the low-frequency region was reminiscent of γ Dor stars, while the other three frequencies of f {sub 2}, f {sub 15}, and f {sub 18} in the high-frequency region (150–196 day{sup −1}) are probably related to pre-He WD components. Our results demonstrate that the more massive MS primary star of WASP 0843–11 is a γ Dor pulsator, whereas the hotter secondary component is a pre-He WD with high-frequency pulsations.

47 OTHER INSTRUMENTATION↗

Automated mesoscale wind fields derived from GOES satellite imagery

A new multispectral image-processing system for extracting mesoscale wind fields automatically from sequences of GOES imagery is described. This system can produce equivalent or superior cloud-wind estimates compared to the time-consuming manual methods used on various interactive meteorological processing systems. Analysis of automated mesoscale cloud winds yield an estimated random error value of less than 1 m/s and produces both regional and mesoscale vector wind-field structure and divergence patterns that are consistent in time and highly correlated with subsequent severe thunderstorm development. As an example, the system is here applied to SMS II five-minute imagery from April 24, 1975 and the results are compared with manually obtained ones.

Wilson, G. S.↗

How the Open Data Policy of the Landsat Program Has Advanced Our Understanding of Environmental Change

A time series is a sequence of observations of a phenomenon taken sequentially in time. A crucial characteristic of a time series is the dependence among adjacent observations – techniques for analyzing this dependence are referred to as time series analysis. This analytical approach enables us to predict or forecast future values of a time series, study the impact of various inputs on the observed phenomenon, and examine interrelationships among related time series variables. Within the geographical sciences, time series analysis has historically been limited to coarse-resolution satellite data, as constructing time series of data suitable for studying land cover and land use dynamics, such as Landsat data, were prohibitively costly. A transformative shift occurred in 2008 when the U.S. Government decided to make free and open all past and future data collected by the Landsat satellite program. The decision brought about a paradigm shift away from analyzing individual images or observations to continuous monitoring in time. Of particular relevance to environmental remote sensing is the ability to forecast observations – if we can predict how future observations should behave, we can infer information about how the land surface is changing. In this presentation, we will examine literature examples that showcase scientific gains enabled by time series analysis of satellite data. We will delve into how the analysis of dense time series of satellite data revealed that overall rate of forest disturbance in the Amazon has increased despite a reduction in deforestation; how different types of forest degradation, previously unquantified, are now being accurately assessed in the Caucasus region; and how we now can study the highly dynamic and intricate patterns of shifting cultivation in Southeast Asia.

Pontus Olofsson↗

Analysis of the GOES 6.7 micrometer channel observations during FIRE 2

Clouds form in moist environments. FIRE Phase II Cirrus Implementation Plan (August, 1990) noted the need for mesoscale measurements of upper tropospheric water vapor content. These measurements are needed for initializing and verifying numerical weather prediction models and for describing the environment in which cirrus clouds develop and dissipate. Various instruments where deployed to measure the water vapor amounts of the upper troposphere during FIRE II (e.g. Raman lidar, CLASS sonds and new cryogenic frost hygrometer on-board aircraft). The formation, maintenance and dissipation of cirrus clouds involve the time variation of the water budget of the upper troposphere. The GOES 6.7 mu m radiance observations are sensitive to the upper tropospheric relative humidity, and therefore proved extremely valuable in planning aircraft missions during the field phase of FIRE II. Warm 6.7 mu m equivalent black body temperatures indicate a relatively dry upper troposphere and were associated with regions generally free of cirrus clouds. Regions that were colder, implying more moisture was available may or may not have had cirrus clouds present. Animation of a time sequence of 6.7 mu m images was particularly useful in planning various FIRE missions. The 6.7 mu m observations can also be very valuable in the verification of model simulations and describing the upper tropospheric synoptic conditions. A quantitative analysis of the 6.7 mu m measurement is required to successfully incorporate these satellite observations into describing the upper tropospheric water vapor budget. Recently, Soden and Bretherton (1993) have proposed a method of deriving an upper tropospheric humidity based on observations from the GOES 6.7 mu m observations. The method is summarized in the next section. In their paper they compare their retrieval method to radiance simulations. Observations were also compared to ECMWF model output to assess the model performance. The FIRE experiment provides a unique opportunity to further verify the GOES upper tropospheric relative humidity retrieval scheme by providing (1) aircraft observations to cross-validate the calibration of the GOES 6.7 mu m channel, (2) accurate upper tropospheric water vapor concentrations for verification, and (3) veritical variability of upper tropospheric water vapor.

Soden, B. J.↗

KIC 12602250: A Low-amplitude Double-mode Delta Scuti Star with Amplitude Modulation

We report a detailed light-curve analysis of the Kepler target Kepler Input Catalog (KIC) 12602250. The results show that KIC 12602250 is a low-amplitude radial double-mode δ-Scuti star with amplitude modulation. The Fourier analysis of the long cadence data (i.e., Q0—Q17, spanning 1471 days) reveals that the variations of the light curve are dominated by the strongest mode with frequency F0 = 11.6141 d{sup -1}, suggesting that KIC 12602250 is a δ-Scuti star. The other independent mode F1 = 14.9741 d{sup -1} is newly detected. The amplitude of the light variations of KIC 12602250 is ~0.06 mag, which indicates that this is a low-amplitude δ-Scuti star; but the ratio of F0/F1 is estimated as 0.7756, which is typical of HADS, and a slow amplitude growth is detected in F1 and f {sub 3}, which could be due to stellar evolution, suggesting that KIC 12602250 could be a post-main-sequence δ Scuti that is crossing the instability strip for the first time.

79 ASTRONOMY AND ASTROPHYSICS↗

Legacy surface change analyses of the 1993 Rock Valley earthquake sequence for direct comparison to planned NA-22 underground conventional high-explosive experiments (Source Physics Experiment 3 (SPE3) - RV/DC Task 1.3 FY22 Final Report)

Recent work under two previous phases of the NNSA NA-22 Source Physics Experiment (SPE) have shown that underground chemical high-explosive experiments can produce detectable surface changes that differ in spatial extent and vertical magnitude depending on the geologic media at the site (Schultz-Fellenz et al., 2018; 2020; Crawford et al., 2021). Neither of these two prior phases of SPE identified natural earthquake-related surface effects in the same region that occurred at a similar depth as the explosive experiments for direct comparison. While earthquakes can also produce surface changes that are detectable using remote sensing data analyses, it is expected that the pattern and spatial extent of surface changes would vary between earthquakes and explosions. However, no direct-observed surface-change signature comparison between earthquakes and explosions has ever been performed. The SPE Phase 3 Rock Valley/Direct Comparison (RV/DC) program presents a unique opportunity to investigate and characterize co-occurrence of both earthquakes and explosions. In this project, we worked to address five tasks in a workflow, as follows: 1. Identify and obtain existing high-resolution legacy satellite and aerial imagery as close in time before and after the 1993 Rock Valley earthquake sequence to temporally constrain the analyses. 2. Transform these pre-earthquake and post-earthquake datasets into digital elevation models (DEMs) using geospatial analysis software packages (e.g., ArcGIS, Agisoft Metashape, and Google Earth Engine). 3. Perform DEM differencing analyses to assess and quantify earthquake-related changes from the 1993 sequence, and develop map products that visualize these analyses. 4. Use the analyses from (3) to: (a) assess spatial distribution and magnitude of surface changes due to the 1993 Rock Valley earthquake sequence, and (b) determine parameters of forthcoming, planned explosion-related surface change data collection from sensors mounted on unmanned aerial vehicles (UAVs) (e.g., spatial extent of collection, design and density of survey control, sensors to deploy, forward speed and line spacing of UAV flight lines, flight altitude). 5. Develop a summary report on the analyses, including how the analyses define parameters and identify focus areas for any future surface change analytical field campaigns related to the explosive experiment. Analyzing these legacy data and identifying whether they can detect any surface changes related to the earthquake sequence facilitates opportunities for direct signature comparison of surface change from explosions at one location, which has never previously been performed. Comparing the surface change signatures from a co-located and depth-equivalent earthquake and an explosion could help to advance remote sensing event discrimination techniques. This report summarizes the work completed toward this ambitious goal.

42 ENGINEERING↗

Monthly and annual percentage levels of wind speed differences computed by using FPS-16 radar/Jimsphere wind profile data from Cape Kennedy, Florida

The percentage levels of wind speed differences are presented computed from sequential FPS-16 radar/Jimsphere wind profiles. The results are based on monthly profiles obtained from December 1964 to July 1970 at Cape Kennedy, Florida. The profile sequences contain a series of three to ten Jimspheres released at approximately 1.5-hour intervals. The results given are the persistence analysis of wind speed difference at 1.5-hour intervals to a maximum time interval of 12 hours. The monthly percentage of wind speed differences and the annual percentage of wind speed differences are tabulated. The percentage levels are based on the scalar wind speed changes calculated over an altitude interval of approximately 50 meters and printed out every 25 meters as a function of initial wind speed within each five-kilometer layer from near sea level to 20 km. In addition, analyses were made of the wind speed difference for the 0.2 to 1 km layer as an aid for studies associated with take-off and landing of the space shuttle.

Susko, M.↗

Switch selector processing

The proper program execution of the switch selector commands that provide sequencing signals to the launch vehicle hardware was verified. Correct execution of each step necessary to activate a switch selector command and maintenance of the minimum timing requirements between steps are verified through analysis of a series of 6D/LVDC intermediate timing cases. Nominal and perturbed switch selector feedback conditions are simulated to verify correct processing of all realistic and timing combinations. A command which is in progress can be properly terminated by issuance of a forced reset. This is verified by forcing the conditions which require a forced reset and observing that the proper termination is completed.

Source record↗

Functional and evolutionary relationships between bacteriorhodopsin and halorhodopsin in the archaebacterium, halobacterium halobium

The archaebacteria occupy a unique place in phylogenetic trees constructed from analyses of sequences from key informational macromolecules, and their study continues to yield interesting ideas on the early evolution and divergence of biological forms. It is now known that the halobacteria among these species contain various retinal-proteins, resembling eukaryotic rhodopsins, but with different functions. Two of these pigments, located in the cytoplasmic membranes of the bacteria, are bacteriorhodopsin (a light-driven proton pump) and halorhodopsin (a light-driven chloride pump). Comparison of these systems is expected to reveal structure/function relationships in these simple (primitive?) energy transducing membrane components and evolutionary relationships which had produced the structural features which allow the divergent functions. Findings indicate that very different primary structures are needed for these proteins to accomplish their different functions. Indeed, analysis of partial amino acid sequences from halo-opsin shows already that few if any long segments exist which are homologous to bacterio-opsin. Either these proteins diverged a very long time ago to allow for the observed differences, or the evolutionary clock in the halobacteria runs faster than usual.

Lanyi, J. K.↗

Constructing Space-Time Views from Fixed Size Statistical Data: Getting the Best of both Worlds

Many performance monitoring tools are currently available to the super-computing community. The performance data gathered and analyzed by these tools fall under two categories: statistics and event traces. Statistical data is much more compact but lacks the probative power event traces offer. Event traces, on the other hand, can easily fill up the entire file system during execution such that the instrumented execution may have to be terminated half way through. In this paper, we propose an innovative methodology for performance data gathering and representation that offers a middle ground. The user can trade-off tracing overhead, trace data size vs. data quality incrementally. In other words, the user will be able to limit the amount of trace collected and, at the same time, carry out some of the analysis event traces offer using space-time views for the entire execution. Two basic ideas arc employed: the use of averages to replace recording data for each instance and formulae to represent sequences associated with communication and control flow. With the help of a few simple examples, we illustrate the use of these techniques in performance tuning and compare the quality of the traces we collected vs. event traces. We found that the trace files thus obtained are, in deed, small, bounded and predictable before program execution and that the quality of the space time views generated from these statistical data are excellent. Furthermore, experimental results showed that the formulae proposed were able to capture 100% of all the sequences associated with 11 of the 15 applications tested. The performance of the formulae can be incrementally improved by allocating more memory at run-time to learn longer sequences.

Schmidt, Melisa↗

A Review of TSUNAMI Applications

The TSUNAMI-1D and TSUNAMI-3D sequences for generating k eff sensitivity coefficients were first released in SCALE 5 in 2004. Several other tools were introduced in the same release, including primarily the TSUNAMI-IP code for uncertainty analysis and similarity assessments. The TSUNAMI sequences added capabilities for identifying important reactions and data for systems using sensitivity coefficients and also introduced new quantitative tools for rigorously assessing the similarity of systems. Over time, the capabilities of these tools have grown, and their use has expanded into other areas such as nuclear data assessment and nuclear covariance data testing. This paper discusses applications of the TSUNAMI tools for sensitivity calculations, sensitivity/uncertainty (S/U)-based validation, and nuclear data testing. This paper is one of a series of papers at this conference on the development and use of TSUNAMI tools. The other papers address the development of the TSUNAMI methods and the use of TSUNAMI for critical experiment design and optimization.

73 NUCLEAR PHYSICS AND RADIATION PHYSICS↗

Diverse Profile of Fermentation Byproducts From Thin Stillage

The economy of biorefineries is influenced not only by biofuel production from carbohydrates but also by the production of valuable compounds from largely underutilized industrial residues. Currently, the demand for many chemicals that could be made in a biorefinery, such as succinic acid (SA), medium-chain fatty acids (MCFAs), and lactic acid (LA), is fulfilled using petroleum, palm oil, or pure carbohydrates as raw materials, respectively. Thin stillage (TS), the residual liquid material following distillation of ethanol, is an underutilized coproduct from the starch biofuel industry. This carbon-rich material has the potential for chemical upgrading by microorganisms. Here, we explored the formation of different fermentation products by microbial communities grown on TS using different bioreactor conditions. At the baseline operational condition (6-day retention time, pH 5.5, 35°C), we observed a mixture of MCFAs as the principal fermentation products. Operation of a bioreactor with a 1-day retention time induced an increase in SA production, and a temperature increase to 55°C resulted in the accumulation of lactic and propionic acids. In addition, a reactor operated with a 1-day retention time at 55°C conditions resulted in LA accumulation as the main fermentation product. The prominent members of the microbial community in each reactor were assessed by 16S rRNA gene amplicon sequencing and phylogenetic analysis. Under all operating conditions, members of the Lactobacillaceae family within Firmicutes and the Acetobacteraceae family within Proteobacteria were ubiquitous. Members of the Prevotellaceae family within Bacteroidetes and Lachnospiraceae family within the Clostridiales order of Firmicutes were mostly abundant at 35°C and not abundant in the microbial communities of the TS reactors incubated at 55°C. The ability to adjust bioreactor operating conditions to select for microbial communities with different fermentation product profiles offers new strategies to explore and compare potentially valuable fermentation products from TS and allows industries the flexibility to adapt and switch chemical production based on market prices and demands.

59 BASIC BIOLOGICAL SCIENCES↗

A mechanistic model of a PWR-based nuclear power plant in response to external hazard-induced station blackout accidents

Natural hazard-induced nuclear accidents, such as the Fukushima Daiichi Accident that occurred in Japan in 2011, have significantly increased reactor safety studies in understanding nuclear power plant (NPP) responses to external hazard events such as earthquakes and floods. Natural hazards could cause the loss of offsite power in nuclear power plants, potentially leading to a Station Blackout (SBO) accident that significantly contributes to the overall risk of nuclear power plant accidents. Despite the fact that extensive research has been conducted on the station blackout accident for nuclear power plant, further understanding of these events is needed, particularly in the context of the dynamic nature of external hazards such as external flooding. This paper estimates the progression of station blackout events for a generic pressurized water reactor (PWR) in response to external flooding events. The original RELAP5-3D model of the Westinghouse four-loop design pressurized water reactor was adopted and modified to simulate the external flood-induced station blackout accident, including the short-term and long-term station blackout scenarios. A sensitivity analysis of long-term station blackout, examining reactor operation times and analyzing key parameters over time, was also conducted in this work. The results of the analyses, especially the critical timing parameters of key event sequences, provide useful insights about the time during the external flooding event, which is important for plant operators to make timely decisions to prevent potential core damage. This paper represents significant progress toward developing an integrated risk assessment framework for further identifying and assessing the effects of the critical sources of uncertainties of nuclear power plant under external hazard-induced events.

Liu, Tao↗

Identification of a new circulating recombinant form of human immunodeficiency virus type 1, CRF124_cpx involving subtypes A, G, H, and CRF27_cpx in Angola

Angola, located in Central Africa, has around 320,000 (270,000–380,000) people living with human immunodeficiency virus (HIV)/AIDS, equivalent to 1% of the country’s population at the end of 2021. A previous study conducted in 2012, using Angolan samples collected between 2008 and 2010 revealed a high prevalence of HIV-1 recombinants, around 42% of sequences, with 21% showing the same UH profile in partial pol region which were grouped into a monophyletic cluster with high bootstrap support. Thus, the objective of the present work was to obtain complete genomes of those sequences and characterize them, aiming at a description of a new circulating recombinant form (CRF). Whole blood from nine HIV-1 UH pol -infected individuals had their genomic DNA extracted, and nested PCR was used to amplify seven overlapping fragments targeting the full-length HIV-1 genome. The final classification was based on maximum likelihood trees, and recombination analyses were performed using a bootscan from the Simplot program. BLAST and Los Alamos Database inspections were used to search other similar H-like pol sequences. Complete genome amplification was possible for three samples, partial genomes were obtained for the other three, and only pol was available for the remaining three sequences. Bootscan analysis of the two whole-genome and three partial genome sequences retrieved from people living with HIV/AIDS (PLHIVA) without epidemiological linkage showed the same complex recombination profile involving HIV-1 subtypes A/G/H/CRF27_cpx, with a total of six recombinant breakpoints, aiming to classify a new HIV-1 CRF124_cpx. We found no other full-length HIV-1 genomes with the same mosaic profile; however, we identified 33 partial pol sequences, mainly sampled from Angola between 2001 to 2019, with the same H-like profile. Bayesian analysis of H and H-like pol sequences indicates that CRF124_cpx probably originated in Angola at mid-1970s, indicating that this CRF has been circulating in the country for a long time. In summary, our study describes a new CRF circulating principally in Angola and highlights the importance of continuing molecular surveillance studies, especially in countries with high molecular diversity of HIV.

60 APPLIED LIFE SCIENCES↗

Kepler Binary Stars in the NGC 6819 Open Cluster: KIC 5113146 and KIC 5111815

In this study, an investigation of two double-lined binary stars KIC 5113146 and KIC 5111815 in the NGC 6819 open cluster is presented based on both photometric and spectroscopic data. Simultaneous analysis of light and radial velocity curves was made and the absolute parameters of the systems’ components were determined for the first time. We find that both systems have F-type main-sequence components. The masses and radii were found to be M 1 = 1.29 ± 0.02M ⊙ , R 1 = 1.47 ± 0.03 R ⊙ and M 2 = 1.19 ± 0.02 M ⊙ , R 2 = 1.13 ± 0.02 R ⊙ for the primary and secondary components of KIC 5113146; and M 1 = 1.51 ± 0.08 M ⊙ , R 1 = 2.02 ± 0.05 R ⊙ and M 2 = 1.19 ± 0.07 M ⊙ , R 2 = 1.32 ± 0.04 R ⊙ for the components of KIC 5111815, respectively. The evolutionary status of the components was evaluated based on the MESA evolutionary tracks and isochrones. The ages of KIC 5111815 and KIC 5113146 were derived to be about 2.50 ± 0.35 Gyr and 1.95 ± 0.40 Gyr, respectively. Photometric distances were calculated to be 2850 ± 185 pc for KIC 5113146 and 3120 ± 260 pc for KIC 5111815. The results reveal that both KIC 5113146 and KIC 5111815 systems are the most likely members of NGC 6819.

79 ASTRONOMY AND ASTROPHYSICS↗

A sequence solution to the Fokker-Planck equation.

In this paper a new approach to nonlinear system analysis based on the Fokker-Planck equation is developed. The development begins as a modification of the parametrix method of partial differential equation theory and provides a sequence solution to the multidimensional time-varying Fokker-Planck equation. This sequence is simplified for the case where only a steady-state solution or a solution for the variance of a particular combination of states is desired. Equations are presented in a form suitable for obtaining numerical results using a digital computer.

Mayfield, W. W.↗