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Wu, Hui

Publications and source records attributed to Wu, Hui.

At least 19 records
All sourcesNASA NTRSDOE OSTI
DOE OSTI2024

Structural diversity and clustering of bacterial flagellar outer domains

Supercoiled flagellar filaments function as mechanical propellers within the bacterial flagellum complex, playing a crucial role in motility. Flagellin, the building block of the filament, features a conserved inner D0/D1 core domain across different bacterial species. In contrast, approximately half of the flagellins possess additional, highly divergent outer domain(s), suggesting varied functional potential. In this study, we report atomic structures of flagellar filaments from three distinct bacterial species: Cupriavidus gilardii , Stenotrophomonas maltophilia , and Geovibrio thiophilus . Our findings reveal that the flagella from the facultative anaerobic G. thiophilus possesses a significantly more negatively charged surface, potentially enabling adhesion to positively charged minerals. Furthermore, we analyze all AlphaFold predicted structures for annotated bacterial flagellins, categorizing the flagellin outer domains into 682 structural clusters. This classification provides insights into the prevalence and experimental verification of these outer domains. Remarkably, two of the flagellar structures reported herein belong to a distinct cluster, indicating additional opportunities on the study of the functional diversity of flagellar outer domains. Our findings underscore the complexity of bacterial flagellins and open up possibilities for future studies into their varied roles beyond motility.

Science & Technology - Other Topics↗
DOE OSTI2024

GEOS: A performance portable multi-physics simulation framework for subsurface applications

GEOS is a simulation framework focused on solving tightly coupled multi-physics problems with an initial emphasis on subsurface reservoir applications. Currently, GEOS supports capabilities for studying carbon sequestration, geothermal energy, hydrogen storage, and related subsurface applications. The unique aspect of GEOS that differentiates it from existing reservoir simulators is the ability to simulate tightly coupled compositional flow, poromechanics, fault slip, fracture propagation, and thermal effects, etc. Extensive documentation is available on the GEOS documentation pages (GEOS Documentation, 2024). Note that GEOS, as presented here, is a complete rewrite of the previous incarnation of the GEOS referred to in (Settgast et al., 2017).

58 GEOSCIENCES↗
DOE OSTI2024

Selecting Appropriate Model Complexity: An Example of Tracer Inversion for Thermal Prediction in Enhanced Geothermal Systems

Abstract A major challenge in the inversion of subsurface parameters is the ill‐posedness issue caused by the inherent subsurface complexities and the generally spatially sparse data. Appropriate simplifications of inversion models are thus necessary to make the inversion process tractable and meanwhile preserve the predictive ability of the inversion results. In this study, we investigate the effect of model complexity on fracture aperture inversion and thermal performance prediction in a field‐scale EGS model. Principal component analysis was used to map the aperture field to a low‐dimensional latent space. The complexity of the inversion model was quantitatively represented by the percentage of total variance in the original aperture fields preserved by the latent space. Tracer, pressure and flow rate data were used to invert for fracture aperture through an ensemble‐based inversion method, and the inferred aperture field was used to predict thermal performance. With an over‐simplified aperture model, ensemble collapse occurred. The inverted aperture models failed to resolve necessary flow and transport features, leading to a biased thermal performance prediction. A complex aperture model involved excessive features and was prone to overinterpreting the inversion data. Both the tracer/pressure/flow rate data reproduction and thermal prediction showed significant uncertainties, making it difficult to properly estimate long‐term thermal performance. Fortunately, our results indicate that there exists an appropriate model complexity which can simultaneously match inversion data and predict thermal performance with an acceptable uncertainty. The quality of the fit of tracer data appears to be a useful indicator of such an appropriate model complexity.

15 GEOTHERMAL ENERGY↗
DOE OSTI2023

Superior zero thermal expansion dual-phase alloy via boron-migration mediated solid-state reaction

Rapid progress in modern technologies demands zero thermal expansion (ZTE) materials with multi-property profiles to withstand harsh service conditions. Thus far, the majority of documented ZTE materials have shortcomings in different aspects that limit their practical utilization. Here, we report on a superior isotropic ZTE alloy with collective properties regarding wide operating temperature windows, high strength-stiffness, and cyclic thermal stability. A boron-migration-mediated solid-state reaction (BMSR) constructs a salient “plum pudding” structure in a dual-phase Er-Fe-B alloy, where the precursor ErFe 10 phase reacts with the migrated boron and transforms into the target Er 2 Fe 14 B (pudding) and α-Fe phases (plum). The formation of such microstructure helps to eliminate apparent crystallographic texture, tailor and form isotropic ZTE, and simultaneously enhance the strength and toughness of the alloy. These findings suggest a promising design paradigm for comprehensive performance ZTE alloys.

36 MATERIALS SCIENCE↗
DOE OSTI2023

Sodium Carbazolide and Derivatives as Solid‐State Electrolytes for Sodium‐Ion Batteries

Abstract Replacing widely used organic liquid electrolytes with solid‐state electrolytes (SSEs) could effectively solve the safety issues in sodium‐ion batteries. Efforts on seeking novel solid‐state electrolytes have been continued for decades. However, issues about SSEs still exist, such as low ionic conductivity at ambient temperature, difficulty in manufacturing, low electrochemical stability, poor compatibility with electrodes, etc. Here, sodium carbazolide (Na‐CZ) and its THF‐coordinated derivatives are rationally fabricated as Na + conductors, and two of their crystal structures are successfully solved. Among these materials, THF‐coordinated complexes exhibit fast Na + conductivities, i.e., 1.20×10 −4 S cm −1 and 1.95×10 −3 S cm −1 at 90 °C for Na‐CZ‐1THF and Na‐CZ‐2THF, respectively, which are among the top Na + conductors under the same condition. Furthermore, stable Na plating/stripping is observed even over 400 h cycling, showing outstanding interfacial stability and compatibility against Na electrode. More advantages such as ease of synthesis, low‐cost, and cold pressing for molding can be obtained. In situ NMR results revealed that the evaporation of THF may play an essential role in the Na + migration, where the movement of THF creates defects/vacancies and facilitates the migration of Na + .

Yu, Yang↗
DOE OSTI2023

Sodium Carbazolide and Derivatives as Solid‐State Electrolytes for Sodium‐Ion Batteries

Abstract Replacing widely used organic liquid electrolytes with solid‐state electrolytes (SSEs) could effectively solve the safety issues in sodium‐ion batteries. Efforts on seeking novel solid‐state electrolytes have been continued for decades. However, issues about SSEs still exist, such as low ionic conductivity at ambient temperature, difficulty in manufacturing, low electrochemical stability, poor compatibility with electrodes, etc. Here, sodium carbazolide (Na‐CZ) and its THF‐coordinated derivatives are rationally fabricated as Na + conductors, and two of their crystal structures are successfully solved. Among these materials, THF‐coordinated complexes exhibit fast Na + conductivities, i.e., 1.20×10 −4 S cm −1 and 1.95×10 −3 S cm −1 at 90 °C for Na‐CZ‐1THF and Na‐CZ‐2THF, respectively, which are among the top Na + conductors under the same condition. Furthermore, stable Na plating/stripping is observed even over 400 h cycling, showing outstanding interfacial stability and compatibility against Na electrode. More advantages such as ease of synthesis, low‐cost, and cold pressing for molding can be obtained. In situ NMR results revealed that the evaporation of THF may play an essential role in the Na + migration, where the movement of THF creates defects/vacancies and facilitates the migration of Na + .

Yu, Yang↗
DOE OSTI2023

The catalytic domains of Streptococcus mutans glucosyltransferases: a structural analysis

Streptococcus mutans, found in the human oral cavity, is a significant contributor to the pathogenesis of dental caries. This bacterium expresses three genetically distinct types of glucosyltransferases named GtfB (GTF-I), GtfC (GTF-SI) and GtfD (GTF-S) that play critical roles in the development of dental plaque. The catalytic domains of GtfB, GtfC and GtfD contain conserved active-site residues for the overall enzymatic activity that relate to hydrolytic glycosidic cleavage of sucrose to glucose and fructose, release of fructose and generation of a glycosyl-enzyme intermediate in the reducing end. In a subsequent transglycosylation step, the glucosyl moiety is transferred to the nonreducing end of an acceptor to form a growing glucan polymer chain made up of glucose molecules. It has been proposed that both sucrose breakdown and glucan synthesis occur in the same active site of the catalytic domain, although the active site does not appear to be large enough to accommodate both functions. These three enzymes belong to glycoside hydrolase family 70 (GH70), which shows homology to glycoside hydrolase family 13 (GH13). GtfC synthesizes both soluble and insoluble glucans (α-1,3 and α-1,6 glycosidic linkages), while GtfB and GtfD synthesize only insoluble or soluble glucans, respectively. Here, crystal structures of the catalytic domains of GtfB and GtfD are reported. These structures are compared with previously determined structures of the catalytic domain of GtfC. With this work, apo structures and inhibitor-complex structures with acarbose are now available for the catalytic domains of GtfC and GtfB. The structure of GtfC with maltose allows further identification and comparison of active-site residues. A model of sucrose binding to GtfB is also included. The new structure of the catalytic domain of GtfD affords a structural comparison of the three S. mutans glycosyltransferases. Unfortunately, the catalytic domain of GtfD is not complete since crystallization resulted in the structure of a truncated protein lacking approximately 200 N-terminal residues of domain IV.

59 BASIC BIOLOGICAL SCIENCES↗
DOE OSTI2022

The EGS Collab Project – Stimulations at Two Depths

The EGS Collab project, supported by the US Department of Energy, is performing intensively monitored rock stimulation and flow tests at the 10-m scale in an underground research laboratory to address challenges in implementing enhanced geothermal systems (EGS). Data and observations from the field tests are compared to simulations to understand processes and build confidence in numerical modeling of the processes. We have completed Experiment 1 (of 3), which examined hydraulic fracturing in a well-characterized underground fractured phyllite test bed at a depth of approximately 1.5 km at the Sanford Underground Research Facility (SURF) in Lead, South Dakota. Testbed characterization included fracture mapping, borehole acoustic and optical televiewers, full waveform sonic, conductivity, resistivity, temperature, campaign p- and s-wave investigations and electrical resistance tomography. Borehole geophysical techniques including passive seismic, continuous active source seismic monitoring, electrical resistance tomography, fiber-based distributed strain, distributed temperature, and distributed acoustic monitoring, were used to carefully monitor stimulation events and flow tests. More than a dozen stimulations and nearly one year of flow tests were performed. Quality data and detailed observations were collected and analyzed during stimulation and water flow tests using ambient temperature and chilled water. We achieved adaptive control of the tests using real-time monitoring and rapid dissemination of data and near-real-time simulation. More detailed numerical simulation was performed to answer key experimental design questions, forecast fracture propagation trajectories and extents, and analyze and evaluate results. Data are freely available from the Geothermal Data Repository. Experiment 2 examines the potential for hydraulic shearing in amphibolite at a depth of about 1.25 km at SURF. This site has a different set of stress and fracture conditions than Experiment 1. The Experiment 2 testbed consists of nine subhorizontal boreholes configured in two fans of two boreholes which surround the testbed and contain grouted-in electrical resistance tomography, seismic sensors, active seismic sources and distributed fiber sensors. A “five-spot” set of test wells that extends from a custom mined alcove includes an injection well and four production/monitoring wells. The testbed was characterized geophysically and hydrologically, and three stimulations have been performed using the Step-Rate Injection Method for Fracture In-Situ Properties (SIMFIP) tool to measure strains, and a new strain quantifying tool (downhole robotic strain analysis tool -DORSA) was deployed in a monitoring hole during stimulation. Real-time data were broadcast during stimulations to allow real-time response to arising issues.

EGS Collab, Enhanced Geothermal Systems, EGS, fiel↗
DOE OSTI2022

Chemical order-disorder nanodomains in Fe 3 Pt bulk alloy

Chemical ordering is a common phenomenon and highly correlated with the properties of solid materials. By means of the redistribution of atoms and chemical bonds, it invokes an effective lattice adjustment and tailors corresponding physical properties. To date, however, directly probing the 3D interfacial interactions of chemical ordering remains a big challenge. In this work, we deciphered the interlaced distribution of nanosized domains with chemical order/disorder in Fe 3 Pt bulk alloy. HAADF-STEM images evidence the existence of such nanodomains. The reverse Monte Carlo method with the X-ray pair distribution function data reveal the 3D distribution of local structures and the tensile effect in the disordered domains at the single-atomic level. The chemical bonding around the domain boundary changes the bonding feature in the disordered side and reduces the local magnetic moment of Fe atoms. This results in a suppressed negative thermal expansion and extended temperature range in Fe 3 Pt bulk alloy with nanodomains. Our study demonstrates a local revelation for the chemical order/disorder nanodomains in bulk alloy. The understanding gained from atomic short-range interactions within the domain boundaries provides useful insights with regard to designing new functional compounds.

36 MATERIALS SCIENCE↗
DOE OSTI2021

Physical properties of the quasi-two-dimensional square lattice antiferromagnet Ba 2 FeSi 2 O 7

In this work, we report magnetization (χ, M ), magnetic specific heat ( C M ), and neutron powder diffraction results on a quasi-two-dimensional (2D) S = 2 square lattice antiferromagnet Ba 2 FeSi 2 O 7 consisting of FeO 4 tetrahedrons with highly compressive tetragonal distortion (27%). Despite of the quasi-2D lattice structure, both χ and C M present three-dimensional magnetic long-range ordering below the Néel temperature T N = 5.2 K . Neutron diffraction data show a collinear Q m = (1,0,1/2) antiferromagnetic (AFM) structure below T N but the ordered moment aligned in the a b plane is suppressed by 26% from the ionic spin S = 2 value ( 4 μ B ). Both the AFM structure and the suppressed moments are well explained by using Monte Carlo simulations with a large single-ion in-plane anisotropy D = 1 .4 meV and a rather small Heisenberg exchange J intra = 0 .15 meV in the plane. The characteristic 2D spin fluctuations are recognized in the magnetic entropy release and diffuse scattering above T N . This new quasi-2D magnetic system also displays unusual nonmonotonic dependence of T N as a function of magnetic field H .

36 MATERIALS SCIENCE↗
DOE OSTI2021

Predicting Thermal Performance of an Enhanced Geothermal System From Tracer Tests in a Data Assimilation Framework

Abstract Predicting the thermal performance of an enhanced geothermal system (EGS) requires a comprehensive characterization of the underlying fracture flow patterns from practically available data such as tracer data. However, due to the inherent complexities of subsurface fractures and the generally insufficient geological/geophysical data, interpreting tracer data for fracture flow characterization and thermal prediction remains a challenging task. The present study aims to tackle the challenge by leveraging a data assimilation method to maximize the utilization of information inherently contained in tracer data, and meanwhile maintain the flexibility to handle various uncertainties. A tracer data interpretation framework was proposed with the following three components integrated: (a) We use principal component analysis (PCA) to reduce the dimensionality of model parameter space. (b) We use ES‐MDA (ensemble smoother with multiple data assimilation) to invert for fracture aperture/flow fields and obtain posterior model ensembles for uncertainty quantification. Various data types are assimilated jointly to improve the predictive ability of the posterior ensemble. (c) The inverted fracture aperture fields are then incorporated into reservoir models to predict thermal performance. We developed a field‐scale EGS model to verify the ability of the framework to characterize highly heterogeneous fracture aperture/flow fields and predicting thermal performance. We also applied the framework to a mesoscale field experiment to demonstrate its potential application in real‐world geothermal reservoirs. The results indicate that the proposed framework can effectively retrieve fracture flow information from tracer data for thermal prediction and uncertainty quantification, and thus provide informative guidance for EGS optimization and risk management.

15 GEOTHERMAL ENERGY↗
DOE OSTI2021

Modeling heat transport processes in enhanced geothermal systems: Validation study from EGS Collab Experiment 1

Heat recovery from enhanced geothermal systems (EGS) is a complex process involving heat transport in both fracture networks and rock formations. A comprehensive understanding of and the ability to model the underlying heat transport mechanisms is important for the success of EGS but remains challenging in practice due to the generally insufficient characterization of EGS reservoirs. In the present study, we analyze an extensively monitored intermediate-scale EGS field experiment performed in a well-characterized testbed. The high-resolution, high-quality measurements from the field experiment enable the development of a high-fidelity model incorporating a well-constrained fracture network. Based on the field experiment, we investigate the complex heat transport processes in an EGS-relevant environment and validate the capability of a numerical approach in simulating these inherently coupled heat transport processes. A series of numerical simulations were performed to study the effects of different heat transport mechanisms, including thermal convection with fracture flow, thermal conduction in rock formations, and the Joule-Thomson effect. The agreement of thermal responses between field measurements and simulation results indicates that our numerical approach can appropriately model the heat transport processes pertaining to heat recovery from EGS reservoirs.

Wu, Hui↗
DOE OSTI2021

Developing Ideal Metalorganic Hydrides for Hydrogen Storage: from Theoretical Prediction to Rational Fabrication

Materials for hydrogen storage have been extensively explored for a few decades. Thousands of materials have been synthesized and tested, however, sparse systems could meet the practical requirements. Metalorganic hydrides discovered recently offer new opportunities. It is, however, extremely time-consuming and inefficient to experimentally screen potential materials from a large variety of metal cations and organic anions. In the present study, we performed wideranging theoretical predictions and screened more than 90 metalorganic hydrides, 20 of them were identified with both high hydrogen capacities (=5 wt%) and suitable thermodynamics (heat of H2 desorption: 25 ~ 35 kJ/mol-H2) that allows hydrogen uptake and release near ambient condition.

Jing, Zijun↗
DOE OSTI2021

Close Observation of Hydraulic Fracturing at EGS Collab Experiment 1: Fracture Trajectory, Microseismic Interpretations, and the Role of Natural Fractures

Abstract Despite the wide application of hydraulic fracturing in enhanced geothermal system (EGS) development and unconventional hydrocarbon production, our understanding of the many factors affecting the propagation of hydraulic fractures has relied on circumstantial evidence. This is partly due to the scarcity of direct observations in the subsurface. The EGS Collab project attempts to address these issues in the context of EGS research by performing intermediate‐scale (∼10 m) hydraulic stimulation experiments in a thoroughly characterized and heavily instrumented underground testbed. This paper analyzes the data collected from the first suite of hydraulic fracturing tests in this testbed, consisting of seven stimulation episodes. High‐quality microseismic data delineate five planar features very clearly. Combining fracture‐wellbore intersection observations from distributed temperature sensing (DTS) and visual observations from an open‐hole well, as well as prior in‐situ stress measurements, we conclude with high certainty that the four larger planes were hydraulic fractures. The growth of the hydraulic fractures was temporarily halted by a prominent, open natural fracture in the testbed but they eventually crossed and slightly reoriented under continued stimulation. Mineral‐filled (i.e., healed) natural fractures, though prevalent in the testbed, did not have perceivable effects on hydraulic fracture propagation. The high‐quality, mutually corroborating data sets allowed conclusions to be drawn with high confidence and attests to the advantage of intermediate‐scale experiments in subsurface research.

58 GEOSCIENCES↗
DOE OSTI2021

An Enhanced Virtual Crack Closure Technique for Stress Intensity Factor Calculation along Arbitrary Crack Fronts and the Application in Hydraulic Fracturing Simulation

The virtual crack closure technique (VCCT) is widely used for calculating energy release rates along crack fronts and modeling the propagation of cracks in solid materials. Although the VCCT formulation for smooth crack fronts has been sufficiently addressed in the literature, the application of VCCT to a nonsmoothed crack front with sharp corners warrants further investigation. In this study, we describe an enhanced VCCT to calculate energy release rates and stress intensity factors for cracks with arbitrary shapes in 3D domains discretized on structured grids. The formulations of the enhanced VCCT were developed and implemented into a multiphysics simulation environment capable of simulating crack propagation in the framework of linear elastic fracture mechanics. Comparisons with existing analytical/numerical solutions and other VCCT approaches were performed to verify the enhanced VCCT in terms of SIF calculation along nonsmoothed crack fronts. We then applied the enhanced VCCT to a hydraulically driven penny-shaped fracture problem to further demonstrate its capability to simulate nonsmoothed fracture propagation.

02 PETROLEUM↗
DOE OSTI2021

Intermediate Sr 2 Co 1.5 Fe 0.5 O 6-δ Tetragonal Structure between Perovskite and Brownmillerite as a Model Catalyst with Layered Oxygen Deficiency for Enhanced Electrochemical Water Oxidation

The generation of hydrogen in an environmentally benign way is highly essential to meet future energy demands. However, in the process of splitting water electrochemically, sluggish kinetics of the oxygen evolution reaction (OER) curtails its applicability, as it drags energy input. Herein, we synthesized SrCo-Fe-O oxides to optimize their OER activity by varying the Co/Fe ratio. Among them, Sr 2 Co 1.5 Fe 0.5 O 6-δ exhibited the best OER catalytic activity in the series, with an overpotential of 318 mV at 10 mA cm -2 and Tafel slope of 44.8 mV dec -1 . High-resolution neutron powder diffraction analysis identified an intermediate structure between the perovskite and brownmillerite, with alternating layers of disorderly orientated oxygen-deficient tetrahedra and fully stoichiometric octahedra. The unique stacking of tetrahedral and octahedral units facilitates desired interactions between the electrode surface and electrolyte. Theoretical calculations revealed that increased covalency of Co 3d and O 2p in Sr 2 Co 1.5 Fe 0.5 O 6-δ oxide is another primary contributor to its augmented water oxidation ability. As a model for developing catalysts with such an intermediate structure, the synergetic effect of oxygen vacancy and hybridization between Co 3d and O 2p assured the Sr 2 Co 1.5 Fe 0.5 O 6-δ oxide as a better catalyst for its enhanced OER activity.

37 INORGANIC, ORGANIC, PHYSICAL, AND ANALYTICAL CH↗