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At least 19 records

HDF5 in the exascale era: Delivering efficient and scalable parallel I/O for exascale applications

Accurately modeling real-world systems requires scientific applications at exascale to generate massive amounts of data and manage data storage efficiently. However, parallel input and output (I/O) faces challenges due to new application workflows and the state-of-the-art memory, interconnect, and storage architectures considered in exascale designs. The storage hierarchy has expanded with node-local persistent memory, solid-state storage, and traditional disk and tape-based storage, thus requiring efficiency at each layer and much more efficient data movement among these layers. This paper discusses how the ExaHDF5 project improved the I/O performance and data management for exascale architectures by enhancing HDF5, a widely used parallel I/O library. The team developed an Asynchronous I/O Virtual Object Layer (VOL) connector that allowed overlapping I/O with computation. They also created a Cache VOL to complement asynchronous I/O by incorporating fast storage layers, such as burst buffer and node-local storage, into the parallel I/O workflow through caching and staging data. Additionally, the team enabled data aggregation and I/O at the node level by using a Subfiling Virtual File Driver (VFD). To demonstrate superior I/O performance with HDF5 at exascale, the ExaHDF5 team collaborated with several exascale applications. In this paper, we show I/O performance improvements for three applications: Cabana (a particle-based simulation library), EQSIM (a regional earthquake simulation software), and E3SM (a climate system modeling library).

Asynchronous I/Ol↗

ExaHDF5: Delivering Efficient Parallel I/O on Exascale Computing Systems

Scientific applications at exascale generate and analyze massive amounts of data. A critical requirement of these applications is the capability to access and manage this data efficiently on exascale systems. As such, parallel I/O, the key technology enables moving data between compute nodes and storage, faces monumental challenges from new applications, memory, and storage architectures considered in the designs of exascale systems. As the storage hierarchy is expanding to include node-local persistent memory, burst buffers, etc., as well as disk-based storage, data movement among these layers must be efficient. Parallel I/O libraries of the future should be capable of handling file sizes of many terabytes and beyond. In this paper, we describe new capabilities we have developed in Hierarchical Data Format version 5 (HDF5), the most popular parallel I/O library for scientific applications. HDF5 is one of the most used libraries at the leadership computing facilities for performing parallel I/O on existing HPC systems. The state-of-the-art features we describe include: Virtual Object Layer (VOL), Data Elevator, asynchronous I/O, full-featured single-writer and multiple-reader (Full SWMR), and parallel querying. In this paper, we introduce these features, their implementations, and the performance and feature benefits to applications and other libraries.

97 MATHEMATICS AND COMPUTING↗

Interfacing HDF5 with a scalable object‐centric storage system on hierarchical storage

Summary Object storage technologies that take advantage of multitier storage on HPC systems are emerging. However, to use these technologies at present, applications have to be modified significantly from current I/O libraries. HDF5, a widely used I/O middleware on HPC systems, provides a virtual object layer (VOL) that allows applications to connect to different storage mechanisms transparently without requiring significant code modifications. We recently designed the proactive data containers (PDC) object‐centric storage system that provides the capabilities of transparent, asynchronous, and autonomous data movement taking advantage of multiple storage tiers—a decision that has so far been left upon the user on most current systems. To enable PDC's features through HDF5 without modifying application codes, we have developed an HDF5 VOL connector that interfaces with PDC. We present in this article the connector interface and evaluate its performance on Cori, a Cray XC40 supercomputer located at the National Energy Research Scientific Computing Center (NERSC). Our evaluation demonstrates up to an 8× improvement compared with HDF5 that has the most recent optimizations.

Mu, Jingqing↗

Hierarchical Data Format (HDF) Status Update

In the "Hierarchical Data Format (HDF) Status Update" talk we will give an update on the recent and upcoming HDF5 software releases, and how to upgrade HDF5-based software to the new major releases HDF5 1.10.* to assure backward and forward compatibility for the files produces with the newest versions of the HDF5 software. We will also focus on a compression feature of HDF5 and will talk about new mechanism for storing HDF5 data in Object Store.

Virtual File Driver↗

Day-night variation in operationally retrieved TOVS temperature biases

Several authors have reported that operationally retrieved TOVS (TIROS Operational Vertical Sounder) temperatures are biased with respect to rawinsonde temperatures or temperature analyses. This note reports a case study from which it is concluded that, at least for the time period Mar. 26 through Apr. 8, 1979, there was a significant day-night variation in TOVS mean layer virtual temperature biases with respect to objective analyses of rawinsonde data over the U.S.

Kidder, Stanley Q.↗

Domain knowledge-informed, process-mapping AI graph for designing Fe-based alloys

<span style="font-family: Calibri, sans-serif; font-size: 12pt;">Continuous improvement in efficiency of a power plant relies on designing materials for use at increasingly higher temperature and/or pressure, for 100,000s hours of operation. Due to complexity, non-linearity and high-dimensionality of the problem, traditional Machine Learning (ML) approaches require unreasonably large datasets for the data-driven model development. Science-based material and process engineering complements hard data with, sometimes soft and intuitive, empirical domain knowledge. Artificial Intelligence (AI) was used in this study to incorporate such knowledge into computational graph architecture (process-mimicking artificial neuron design, causal layer and graph structures, ensemble modeling of latent states) and learning procedures (variable transformation, fuzzy physics pre-training and freezing of deep layers, virtual microstructure representation, and adversarial multi-objective optimization). The first alloys design pathways suggested by the AI tool (pyroMind) passed a preliminary engineering review on soundness and transparency.</span>

Romanov, Vyacheslav↗

Method and Apparatus for Virtual Interactive Medical Imaging by Multiple Remotely-Located Users

A virtual interactive imaging system allows the displaying of high-resolution, three-dimensional images of medical data to a user and allows the user to manipulate the images, including rotation of images in any of various axes. The system includes a mesh component that generates a mesh to represent a surface of an anatomical object, based on a set of data of the object, such as from a CT or MRI scan or the like. The mesh is generated so as to avoid tears, or holes, in the mesh, providing very high-quality representations of topographical features of the object, particularly at high- resolution. The system further includes a virtual surgical cutting tool that enables the user to simulate the removal of a piece or layer of a displayed object, such as a piece of skin or bone, view the interior of the object, manipulate the removed piece, and reattach the removed piece if desired. The system further includes a virtual collaborative clinic component, which allows the users of multiple, remotely-located computer systems to collaboratively and simultaneously view and manipulate the high-resolution, three-dimensional images of the object in real-time.

Ross, Muriel D.↗

NASA Tech Briefs, January 2003

Topics covered include: Optoelectronic Tool Adds Scale Marks to Photographic Images; Compact Interconnection Networks Based on Quantum Dots; Laterally Coupled Quantum-Dot Distributed-Feedback Lasers; Bit-Serial Adder Based on Quantum Dots; Stabilized Fiber-Optic Distribution of Reference Frequency; Delay/Doppler-Mapping GPS-Reflection Remote-Sensing System; Ladar System Identifies Obstacles Partly Hidden by Grass; Survivable Failure Data Recorders for Spacecraft; Fiber-Optic Ammonia Sensors; Silicon Membrane Mirrors with Electrostatic Shape Actuators; Nanoscale Hot-Wire Probes for Boundary-Layer Flows; Theodolite with CCD Camera for Safe Measurement of Laser-Beam Pointing; Efficient Coupling of Lasers to Telescopes with Obscuration; Aligning Three Off-Axis Mirrors with Help of a DOE; Calibrating Laser Gas Measurements by Use of Natural CO2; Laser Ranging Simulation Program; Micro-Ball-Lens Optical Switch Driven by SMA Actuator; Evaluation of Charge Storage and Decay in Spacecraft Insulators; Alkaline Capacitors Based on Nitride Nanoparticles; Low-EC-Content Electrolytes for Low-Temperature Li-Ion Cells; Software for a GPS-Reflection Remote-Sensing System; Software for Building Models of 3D Objects via the Internet; "Virtual Cockpit Window" for a Windowless Aerospacecraft; CLARAty Functional-Layer Software; Java Library for Input and Output of Image Data and Metadata; Software for Estimating Costs of Testing Rocket Engines; Energy-Absorbing, Lightweight Wheels; Viscoelastic Vibration Dampers for Turbomachine Blades; Soft Landing of Spacecraft on Energy-Absorbing Self-Deployable Cushions; Pneumatically Actuated Miniature Peristaltic Vacuum Pumps; Miniature Gas-Turbine Power Generator; Pressure-Sensor Assembly Technique; Wafer-Level Membrane-Transfer Process for Fabricating MEMS; A Reactive-Ion Etch for Patterning Piezoelectric Thin Film; Wavelet-Based Real-Time Diagnosis of Complex Systems; Quantum Search in Hilbert Space; Analytic Method for Computing Instrument Pointing Jitter; and Semiselective Optoelectronic Sensors for Monitoring Microbes.

Source record↗

Developing a Standard Method for Link-Layer Security of CCSDS Space Communications

Communications security for space systems has been a specialized field generally far removed from considerations of mission interoperability and cross-support in fact, these considerations often have been viewed as intrinsically opposed to security objectives. The space communications protocols defined by the Consultative Committee for Space Data Systems (CCSDS) have a twenty-five year history of successful use in over 400 missions. While the CCSDS Telemetry, Telecommand, and Advancing Orbiting Systems protocols for use at OSI Layer 2 are operationally mature, there has been no direct support within these protocols for communications security techniques. Link-layer communications security has been successfully implemented in the past using mission-unique methods, but never before with an objective of facilitating cross-support and interoperability. This paper discusses the design of a standard method for cryptographic authentication, encryption, and replay protection at the data link layer that can be integrated into existing CCSDS protocols without disruption to legacy communications services. Integrating cryptographic operations into existing data structures and processing sequences requires a careful assessment of the potential impediments within spacecraft, ground stations, and operations centers. The objective of this work is to provide a sound method for cryptographic encapsulation of frame data that also facilitates Layer 2 virtual channel switching, such that a mission may procure data transport services as needed without involving third parties in the cryptographic processing, or split independent data streams for separate cryptographic processing.

Biggerstaff, Craig↗

Gilgamesh: A Multithreaded Processor-In-Memory Architecture for Petaflops Computing

Processor-in-Memory (PIM) architectures avoid the von Neumann bottleneck in conventional machines by integrating high-density DRAM and CMOS logic on the same chip. Parallel systems based on this new technology are expected to provide higher scalability, adaptability, robustness, fault tolerance and lower power consumption than current MPPs or commodity clusters. In this paper we describe the design of Gilgamesh, a PIM-based massively parallel architecture, and elements of its execution model. Gilgamesh extends existing PIM capabilities by incorporating advanced mechanisms for virtualizing tasks and data and providing adaptive resource management for load balancing and latency tolerance. The Gilgamesh execution model is based on macroservers, a middleware layer which supports object-based runtime management of data and threads allowing explicit and dynamic control of locality and load balancing. The paper concludes with a discussion of related research activities and an outlook to future work.

management locality load balance↗

Rapid prototyping 3D virtual world interfaces within a virtual factory environment

On-going work into user requirements analysis using CLIPS (NASA/JSC) expert systems as an intelligent event simulator has led to research into three-dimensional (3D) interfaces. Previous work involved CLIPS and two-dimensional (2D) models. Integral to this work was the development of the University of Massachusetts Lowell parallel version of CLIPS, called PCLIPS. This allowed us to create both a Software Bus and a group problem-solving environment for expert systems development. By shifting the PCLIPS paradigm to use the VEOS messaging protocol we have merged VEOS (HlTL/Seattle) and CLIPS into a distributed virtual worlds prototyping environment (VCLIPS). VCLIPS uses the VEOS protocol layer to allow multiple experts to cooperate on a single problem. We have begun to look at the control of a virtual factory. In the virtual factory there are actors and objects as found in our Lincoln Logs Factory of the Future project. In this artificial reality architecture there are three VCLIPS entities in action. One entity is responsible for display and user events in the 3D virtual world. Another is responsible for either simulating the virtual factory or communicating with the real factory. The third is a user interface expert. The interface expert maps user input levels, within the current prototype, to control information for the factory. The interface to the virtual factory is based on a camera paradigm. The graphics subsystem generates camera views of the factory on standard X-Window displays. The camera allows for view control and object control. Control or the factory is accomplished by the user reaching into the camera views to perform object interactions. All communication between the separate CLIPS expert systems is done through VEOS.

Kosta, Charles Paul↗

Acid dissolution experiments - Carbonates and the 6.8-micrometer bands in interplanetary dust particles

A chemical dissolution experiment on an interplanetary dust particle (IDP) showed that carbonates, not acid-insoluble organic compounds, were responsible for virtually all the absorption at 6.8 micrometers seen in the infrared spectra of this particle. The IDP examined had an infrared spectrum characteristic of layer-lattice silicates and belongs to a class of IDP's whose spectra resemble those of protostellar objects like W33 A, which also exhibit a band at 6.8 micrometers.

Sandford, S. A.↗

Multilayer Network Clarifies Prevailing Water Consumption Telecouplings in the United States

Virtual water flows are used to map the indirect water consumption connections implied by the supply chain of a city, region, or country. This information can be used to manage supply chains to achieve environmental policy objectives and mitigate environmental risks to critical supply chains. A limitation of prior work is that these flows are typically analyzed using monolayer networks, which ignores crucial intersectoral or interlayer couplings. Here, in this study, we use a multilayer network to account for such couplings when analyzing blue virtual water flows in the United States. Our multilayer network consists of 115 different regions (nodes), covering the entire conterminous United States; 41 coupled economic sectors (layers); and ∼2 × 10 7 possible links. To analyze the multilayer network, we focus on three fundamental network properties: topological connectivity, mesoscale structure, and node centrality. The network has a high connectivity, with each node being on average connected to roughly 2/3 of the network's nodes. Interlayer flows are a major driver of connectivity, representing ∼54% of all the network's connections. Five different groups of tightly connected nodes (communities) characterize the network. Each community represents a preferred spatial mode of long-range virtual water interaction within the United States. We find that large (populous) cities have a stronger influence than small ones on network functioning because they attract and recirculate more virtual water through their supply chains. Our results also highlight differences between the multilayer and monolayer virtual water network, which overall show that the former provides a more realistic representation of virtual water flows.

Garcia Gonzalez, Susana↗

Quantifying Uncertainties in Modeling Wind Resource Data from Different PBL Schemes in the WRF Model: A Case Study Over the Puerto Rico Region

This study examines the modeling uncertainty of wind resource data stemming from the use of various planetary boundary layer (PBL) parameterizations available in the Weather Research and Forecasting (WRF) model. WRF-based wind simulations spanning 20 years at 3-km resolution using 11 different PBL schemes are used to objectively investigate the uncertainty in modeling wind speed for land-based wind (LBW) and offshore wind (OSW) locations in Puerto Rico. The uncertainty in the wind modeling for the 20-year dataset is quantified using the spread index (SI) and standard deviation (SD). For virtual LBW and OSW sites, the SI and SD values are analyzed as calculated across various spatial and temporal scales. Because the PBL's atmospheric stability conditions can be characterized into two dominant categories, the study focuses on analyzing the SI and SD for daytime (mainly unstable PBL conditions) and nighttime (mainly stable PBL conditions). For wind shear (10 m-200 m) at the OSW and LBW sites, WRF-based numerical experiments indicate the following SI (or SD) ranges: 39%-94% (0.74 m/s-1.44 m/s) during the daytime for OSW, 50%-75% (0.68 m/s-1.19 m/s) during the daytime for LBW, 37%-60% (0.73 m/s-1.12 m/s) during the nighttime for OSW, and 57%-143 % (0.65 m/s-1.43 m/s) during the nighttime for LBW. While a high SI is observed when modeling LBW during the nighttime, there are notable modeling uncertainties during the daytime on the leeward side of the orographic barriers for Puerto Rico.

17 WIND ENERGY↗

Testing of the Crew Exploration Vehicle in NASA Langley's Unitary Plan Wind Tunnel

As part of a strategic, multi-facility test program, subscale testing of NASA s Crew Exploration Vehicle was conducted in both legs of NASA Langley s Unitary Plan Wind Tunnel. The objectives of these tests were to generate aerodynamic and surface pressure data over a range of supersonic Mach numbers and reentry angles of attack for experimental and computational validation and aerodynamic database development. To provide initial information on boundary layer transition at supersonic test conditions, transition studies were conducted using temperature sensitive paint and infrared thermography optical techniques. To support implementation of these optical diagnostics in the Unitary Wind Tunnel, the experiment was first modeled using the Virtual Diagnostics Interface software. For reentry orientations of 140 to 170 degrees (heat shield forward), windward surface flow was entirely laminar for freestream unit Reynolds numbers equal to or less than 3 million per foot. Optical techniques showed qualitative evidence of forced transition on the windward heat shield with application of both distributed grit and discreet trip dots. Longitudinal static force and moment data showed the largest differences with Mach number and angle of attack variations. Differences associated with Reynolds number variation and/or laminar versus turbulent flow on the heat shield were very small. Static surface pressure data supported the aforementioned trends with Mach number, Reynolds number, and angle of attack.

Murphy, Kelly J.↗

A methodology for the design and evaluation of user interfaces for interactive information systems

The definition of proposed research addressing the development and validation of a methodology for the design and evaluation of user interfaces for interactive information systems is given. The major objectives of this research are: the development of a comprehensive, objective, and generalizable methodology for the design and evaluation of user interfaces for information systems; the development of equations and/or analytical models to characterize user behavior and the performance of a designed interface; the design of a prototype system for the development and administration of user interfaces; and the design and use of controlled experiments to support the research and test/validate the proposed methodology. The proposed design methodology views the user interface as a virtual machine composed of three layers: an interactive layer, a dialogue manager layer, and an application interface layer. A command language model of user system interactions is presented because of its inherent simplicity and structured approach based on interaction events. All interaction events have a common structure based on common generic elements necessary for a successful dialogue. It is shown that, using this model, various types of interfaces could be designed and implemented to accommodate various categories of users. The implementation methodology is discussed in terms of how to store and organize the information.

Dominick, Wayne D.↗

Status of orifice induced pressure error studies

The construction of high Reynolds number facilities, such as the National Transonic Facility (NTF) and the 0.3-m Transonic Cryogenic Tunnel (TCT), has stimulated interest again in the study of orifice induced static pressure. In a high Reynolds number facility, the orifice will have a much larger effect on the boundary layer than in a conventional wind tunnel. The present investigation was performed in the 0.3-m TCT at Mach numbers in the range from 0.60 to 0.80 and Reynolds numbers in the range from 6,000,000 to 40,000,000 with the objective to compare the porous plug orifices to conventional 0.025 cm orifices in a high Reynolds number environment. It was found that there was an error at high Reynolds numbers which could not be neglected and that the use of a porous metal disk in a conventional orifice could virtually eliminate the orifice induced pressure error.

Plentovich, E. B.↗

Real-time 3-D X-ray and gamma-ray viewer

A multi-pinhole aperture lead screen forms an equal plurality of invisible mini-images having dissimilar perspectives of an X-ray and gamma-ray emitting object (ABC) onto a near-earth phosphor layer. This layer provides visible light mini-images directly into a visible light image intensifier. A viewing screen having an equal number of dissimilar perspective apertures distributed across its face in a geometric pattern identical to the lead screen, provides a viewer with a real, pseudoscopic image (A'B'C') of the object with full horizontal and vertical parallax. Alternatively, a third screen identical to viewing screen and spaced apart from a second visible light image intensifier, may be positioned between the first image intensifier and the viewing screen, thereby providing the viewer with a virtual, orthoscopic image (A"B"C") of the object (ABC) with full horizontal and vertical parallax.

Yin, L. I.↗