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At least 19 records

Uncertainty-Informed Volume Visualization using Implicit Neural Representation

The increasing adoption of Deep Neural Networks (DNNs) has led to their application in many challenging scientific visualization tasks. While advanced DNNs offer impressive generalization capabilities, understanding factors such as model prediction quality, robustness, and uncertainty is crucial. These insights can enable domain scientists to make informed decisions about their data. However, DNNs inherently lack ability to estimate prediction uncertainty, necessitating new research to construct robust uncertainty-aware visualization techniques tailored for various visualization tasks. In this work, we propose uncertainty-aware implicit neural representations to model scalar field data sets effectively and comprehensively study the efficacy and benefits of estimated uncertainty information for volume visualization tasks. We evaluate the effectiveness of two principled deep uncertainty estimation techniques: (1) Deep Ensemble and (2) Monte Carlo Dropout (MC-Dropout). These techniques enable uncertainty-informed volume visualization in scalar field data sets. Our extensive exploration across multiple data sets demonstrates that uncertainty-aware models produce informative volume visualization results. Moreover, integrating prediction uncertainty enhances the trustworthiness of our DNN model, making it suitable for robustly analyzing and visualizing real-world scientific volumetric data sets.

Saklani, Shanu↗

Analysis of Subgrid Eddy Diffusivity in Turbulence Using Direct Numerical Simulation Databases

Direct numerical simulation data in isotropic turbulence at Taylor-scale Reynolds number 90 are used to compute subgrid transfer and spectral eddy diffusivities for passive scalars at Schmidt numbers 1 and 1/8. The results are consistent with spectral transfer processes dominated by a local forward cascade in wavenumber space which is a consequence of moderately nonlocal interactions in the scalar fields. Data decompositions show that resolvable-subgrid interactions make (in general) substantially stronger contributions than fully-subgrid interactions to the eddy diffusivity, which has a non-negligible inverse cascade, or backscatter, component. The eddy diffusivity has a strong cusp at wavenumbers close to the cutoff value separating resolvable and subgrid ranges. At low wavenumbers the eddy diffusivity is generally small, but there the details depend on Schmidt number. The behavior of the subgrid turbulent Schmidt number (the ratio of effective eddy viscosity to eddy diffusivity) is observed to depend strongly on Schmidt number. In interpreting the results at a given spectral cutoff it is important to note that the spectrum of less diffusive scalars (of higher Schmidt number) has more high-wavenumber content.

Yeung, P. K.↗

The Magsat scalar magnetometer

The Magsat scalar magnetometer is derived from optical pumping magnetometers flown on the orbiting geophysical observatories. The basic sensor, a cross-coupled arrangement of absorption cells, photodiodes, and amplifiers, oscillates at the Larmor frequency of atomic moments precessing about the ambient field direction. The Larmor frequency output is accumulated digitally and stored for transfer to the spacecraft telemetry stream. In orbit the instrument has met its principal objective of calibrating the vector magnetometer and providing scalar field data.

Farthing, W. H.↗

A compressed marine data set for geomagnetic field modeling

Some 13 million scalar magnetic field data points that have been collected from the world's ocean areas reside in the collection of the National Geophysical Data Center. In order to derive a suitable data set for modeling the geomagnetic field of the earth, each ship track is divided into 220 km segments. The distribution of the reduced data in position, time and local time is discussed. The along-track filtering process described has proved to be an effective method of condensing large numbers of shipborne magnetic data into a manageable and meaningful data set for field modeling. This process also provides the benefits of smoothing short-wavelength crystal anomalies, discarding data recorded during magnetically noisy periods, and assigning reasonable error estimates to be utilized in the least squares modeling.

Langel, R. A.↗

Backus Effect on a Perpendicular Errors in Harmonic Models of Real vs. Synthetic Data

Measurements of geomagnetic scalar intensity on a thin spherical shell alone are not enough to separate internal from external source fields; moreover, such scalar data are not enough for accurate modeling of the vector field from internal sources because of unmodeled fields and small data errors. Spherical harmonic models of the geomagnetic potential fitted to scalar data alone therefore suffer from well-understood Backus effect and perpendicular errors. Curiously, errors in some models of simulated 'data' are very much less than those in models of real data. We analyze select Magsat vector and scalar measurements separately to illustrate Backus effect and perpendicular errors in models of real scalar data. By using a model to synthesize 'data' at the observation points, and by adding various types of 'noise', we illustrate such errors in models of synthetic 'data'. Perpendicular errors prove quite sensitive to the maximum degree in the spherical harmonic expansion of the potential field model fitted to the scalar data. Small errors in models of synthetic 'data' are found to be an artifact of matched truncation levels. For example, consider scalar synthetic 'data' computed from a degree 14 model. A degree 14 model fitted to such synthetic 'data' yields negligible error, but amplifies 4 nT (rmss) added noise into a 60 nT error (rmss); however, a degree 12 model fitted to the noisy 'data' suffers a 492 nT error (rmms through degree 12). Geomagnetic measurements remain unaware of model truncation, so the small errors indicated by some simulations cannot be realized in practice. Errors in models fitted to scalar data alone approach 1000 nT (rmss) and several thousand nT (maximum).

Voorhies, C. V.↗

Near earth magnetic disturbance in total field at high latitudes. 1: Summary of data from OGO's 2, 4, and 6

Variations in the total (i.e. scalar) magnetic field data from the polar orbiting OGO-2, 4, and 6 spacecraft (altitudes 400-1510 km) are summarized for invariant latitudes above 55 deg. Data from all degrees of magnetic disturbance are included. The data are presented in terms of the quantity delta B(= measured field magnitude minus the field magnitude from a spherical harmonic model of the quiet field).

Langel, R. A.↗

AMM: Adaptive Multilinear Meshes

Adaptive representations are increasingly indispensable for reducing the in-memory and on-disk footprints of large-scale data. Usual solutions are designed broadly along two themes: reducing data precision, e.g., through compression, or adapting data resolution, e.g., using spatial hierarchies. Additionally, recent research suggests that combining the two approaches, i.e., adapting both resolution and precision simultaneously, can offer significant gains over using them individually. However, there currently exist no practical solutions to creating and evaluating such representations at scale. In this work, we present a new resolution-precision-adaptive representation to support hybrid data reduction schemes and offer an interface to existing tools and algorithms. Through novelties in spatial hierarchy, our representation, Adaptive Multilinear Meshes (AMM), provides considerable reduction in the mesh size. AMM creates a piecewise multilinear representation of uniformly sampled scalar data and can selectively relax or enforce constraints on conformity, continuity, and coverage, delivering a flexible adaptive representation. AMM also supports representing the function using mixed-precision values to further the achievable gains in data reduction. We describe a practical approach to creating AMM incrementally using arbitrary orderings of data and demonstrate AMM on six types of resolution and precision datastreams. By interfacing with state-of-the-art rendering tools through VTK, we demonstrate the practical and computational advantages of our representation for visualization techniques. With an open-source release of our tool to create AMM, we make such evaluation of data reduction accessible to the community, which we hope will foster new opportunities and future data reduction schemes.

97 MATHEMATICS AND COMPUTING↗

MAGSAT and aeromagnetic data in the North American continent

Problems were encountered in deriving a proper reference field to be subtracted from the aeromagnetic data obtained from Project MAGNET. Field models tried thus far do not seem to eliminate properly the main field. The MAGSAT data in the North American continent for the period November 1 to December 22, 1979 are being compiled and compared with MAGNET data. Efforts are being made to eliminate the orbital bias errors. A computer program was developed and successfully tested which computes a topographic profile of the Curie depth isotherm which fits best to the observed vector or scalar field magnetic data.

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Towards replacing physical testing of granular materials with a Topology-based Model

In the study of packed granular materials, the performance of a sample (e.g., the detonation of a high-energy explosive) often correlates to measurements of a fluid flowing through it. The “effective surface area,” the surface area accessible to the airflow, is typically measured using a permeametry apparatus that relates the flow conductance to the permeable surface area via the Carman-Kozeny equation. This equation allows calculating the flow rate of a fluid flowing through the granules packed in the sample for a given pressure drop. However, Carman-Kozeny makes inherent assumptions about tunnel shapes and flow paths that may not accurately hold in situations where the particles possess a wide distribution in shapes, sizes, and aspect ratios, as is true with many powdered systems of technological and commercial interest. To address this challenge, we replicate these measurements virtually on micro-CT images of the powdered material, introducing a new Pore Network Model based on the skeleton of the Morse-Smale complex. Pores are identified as basins of the complex, their incidence encodes adjacency, and the conductivity of the capillary between them is computed from the cross-section at their interface. We build and solve a resistive network to compute an approximate laminar fluid flow through the pore structure. Here, we provide two means of estimating flow-permeable surface area: (i) by direct computation of conductivity, and (ii) by identifying dead-ends in the flow coupled with isosurface extraction and the application of the Carman-Kozeny equation, with the aim of establishing consistency over a range of particle shapes, sizes, porosity levels, and void distribution patterns.

36 MATERIALS SCIENCE↗

Error enhancement in geomagnetic models derived from scalar data

Models of the main geomagnetic field are generally represented by a scalar potential gamma expanded in a finite number of spherical harmonics. Very accurate observations of F were used, but indications exist that the accuracy of models derived from them is considerably lower. One problem is that F does not always characterize gamma uniquely. It is not clear whether such ambiguity can be encountered in deriving gamma from F in geomagnetic surveys, but there exists a connection, due to the fact that the counterexamples of Backus are related to the dipole field, while the geomagnetic field is dominated by its dipole component. If the models are recovered with a finite error (i.e. they cannot completely fit the data and consequently have a small spurious component), this connection allows the error in certain sequences of harmonic terms in gamma to be enhanced without unduly large effects on the fit of F to the model.

Stern, D. P.↗

Initial geomagnetic field model from MAGSAT

Magsat data from magnetically quiet days were used to derive a thirteenth degree and order spherical harmonic geomagnetic field model, MGST(3/80). The model utilized both scalar and vector data and fit that data with standard deviations of 8, 52, 55 and 97 nT for the scalar magnitude, B sub r, B sub theta and B sub phi respectively. When compared with earlier models, the Earth's dipole moment continues to decrease at a rate of about 26 nT/year. Evaluation of earlier models with Magsat data shows that the scalar field at the Magsat epoch is best predicted by the POGO(2/72) model but that the AWC/75 and IGS/75 are better for predicting vector fields.

Langel, R. A.↗

Magnetization modeling in the north and equatorial Atlantic Ocean using MAGSAT data

Magsat 2 x 2-deg scalar anomalous-magnetic-field data (Langel et al., 1982) for the northern and equatorial Atlantic are inverted and combined with physiographic data and laboratory results on the magnetization of oceanic rocks and the oceanic crust to construct models explaining the shorter-wavelength component of the anomalies. An annihilator is applied to the inversion results to eliminate reverse-magnetized sources and facilitate comparisons of areas inverted separately, and a latitude effect on source spacing is tentatively attributed to greater noise contamination at lower latitudes. It is found that remanent magnetization combined with considerable crustal thickening can best explain the high intensity levels observed, although viscous magnetization or contamination of the data by noncrustal sources must also be considered.

Hayling, K. L.↗

Analysis of MAGSAT data of the Indian region

Data tapes were decoded and 24 tracks over the Indian region were reduced to common elevation. Profiles of raw scalar and vector field data and the residuals along few passes were prepared. An anomaly data set was created from the Investigator-B tape. Data was sampled on an 0.5 deg by 0.5 deg grid.

Agarwal, G. C.↗

Magnetospheric-field distortions observed by OGO 3 and 5.

The rubidium vapor magnetometer data of the scalar magnetic-field intensity obtained by the OGO 3 and 5 satellites are analyzed to study the magnetospheric-field distortions in terms of the observed field magnitude under quiet and slightly disturbed conditions minus the magnitude of the reference geomagnetic field (delta B). Average contours of equal delta Bs are shown in the geomagnetic noon-midnight and dawn-dusk meridian planes for magnetically quiet and slightly disturbed conditions. The equatorial distribution of observed delta Bs as a function of geocentric distance differs substantially from that expected from the well-known models of the quiet-time ring current. Other findings suggest that there must be a population of low-energy particles with substantial total energy near the equator at distances of 2 to 5 earth radii that has not been recognized as having sufficient energy to inflate the magnetic field.

Sugiura, M.↗

A Practical Solver for Scalar Data Topological Simplification

This paper presents a practical approach for the optimization of topological simplification, a central pre-processing step for the analysis and visualization of scalar data. Given an input scalar field f and a set of “signal” persistence pairs to maintain, our approaches produces an output field g that is close to f and which optimizes (i) the cancellation of “non-signal” pairs, while (ii) preserving the “signal” pairs. In contrast to pre-existing simplification algorithms, our approach is not restricted to persistence pairs involving extrema and can thus address a larger class of topological features, in particular saddle pairs in three-dimensional scalar data. Our approach leverages recent generic persistence optimization frameworks and extends them with tailored accelerations specific to the problem of topological simplification. Extensive experiments report substantial accelerations over these frameworks, thereby making topological simplification optimization practical for real-life datasets. Our approach enables a direct visualization and analysis of the topologically simplified data, e.g., via isosurfaces of simplified topology (fewer components and handles). We apply our approach to the extraction of prominent filament structures in three-dimensional data. Specifically, we show that our pre-simplification of the data leads to practical improvements over standard topological techniques for removing filament loops. Here, we also show how our approach can be used to repair genus defects in surface processing. Finally, we provide a C++ implementation for reproducibility purposes.

97 MATHEMATICS AND COMPUTING↗

Near earth magnetic disturbance in total field at high latitudes. 2: Interpretation of data from OGO's 2, 4, and 6

Variations in the scalar magnetic field (delta B) from the polar orbiting OGO 2, 4, and 6 spacecraft, with supporting vector magnetic field data from surface observatories, were analyzed at dipole latitudes above 55 deg. Although individual satellite passes, at low altitudes, confirm the existence of electrojet currents, neither individual satellite passes nor contours of average delta B are consistent with latitudinally narrow electrojet currents as the principal source of delta B at the satellite. The ratio of delta B magnitudes in positive and negative regions is variable. The characteristics of the negative delta B region indicate a latitudinally broad ionospheric source. Comparison of the surface magnetic disturbance caused by the equivalent current with the measured average surface disturbance shows good agreement except in localized details. Because delta B decreases very slowly with altitude in the positive delta B region, it is not possible to account for this disturbance in terms of ionospheric currents. The contribution to the satellite delta B due to a model electrojet, which reproduced the measured average surface horizontal disturbance, was computed. Definitive identification of all sources of positive delta B is not possible at this time.

Langel, R. A.↗

Backus effect observed by Magsat

Two harmonic expansions of the geomagnetic potential, obtained from Magsat, are compared, one based on scalar data and one based on vector data. It is found that although the field magnitudes given by the two models are in close agreement, the vector fields are not; the vector difference was highly regular. Analysis of the data showed that the Backus effect (1970) accounted for most of the discrepancy. This result emphasizes the importance of using vector data in deriving global models of the geomagnetic field and suggests that some past models based on scalar data alone may suffer from errors of a similar nature.

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