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All sourcesNASA NTRSDOE OSTI
DOE OSTI2024

Exploring Ion Mobility Mass Spectrometry Data File Conversions to Leverage Existing Tools and Enable New Workflows

Ion mobility (IM) is often combined with LC-MS experiments to provide an additional dimension of separation for complex sample analysis. While highly complex samples are better characterized by the full dimensionality of LC-IM-MS experiments to uncover new information, downstream data analysis workflows are often not equipped to properly mine the additional IM dimension. For many samples the data acquisition benefits of including IM separations are all that is necessary to uncover sample information and the full dimensionality of the data is not required for data analysis. Post-acquisition reduction and adaptation of the dimensions of LC-IM-MS and IM-MS experiments into an LC-MS format opens the possibility to use a plethora of existing software tools. In this work, we developed data file conversion tools to reduce the complexity of IM data analysis. Three data file transformations are introduced in the PNNL PreProcessor software: 1) mapping the IM axis to the LC axis for IM-MS data, 2) converting the drift time vs. m/z space to CCS/z vs m/z space, and 3) transforming All Ions IM/MS mobility aligned fragmentation data to a standard LC-MS DDA data file format. Finally, these new data file conversions are demonstrated with corresponding lipidomics and proteomics workflows that leverage existing LC-MS data analysis software to highlight the benefits of the data transformations.

37 INORGANIC, ORGANIC, PHYSICAL, AND ANALYTICAL CH↗
DOE OSTI2019

Sample Complexity of Power System State Estimation Using Matrix Completion

In this paper, we propose an analytical framework to quantify the amount of data samples needed to obtain accurate state estimation in a power system - a problem known as sample complexity analysis in computer science. Motivated by the increasing adoption of distributed energy resources into the distribution-level grids, it becomes imperative to estimate the state of distribution grids in order to ensure stable operation. Traditional power system state estimation techniques mainly focus on the transmission network which involve solving an overdetermined system and eliminating bad data. However, distribution networks are typically underdetermined due to the large number of connection points and high cost of pervasive installation of measurement devices. In this paper, we consider the recently proposed state-estimation method for underdetermined systems that is based on matrix completion. In particular, a constrained matrix completion algorithm was proposed, wherein the standard matrix completion problem is augmented with additional equality constraints representing the physics (namely power-flow constraints). We analyze the sample complexity of this general method by proving an upper bound on the sample complexity that depends directly on the properties of these constraints that can lower number of needed samples as compared to the unconstrained problem. To demonstrate the improvement that the constraints add to state estimation, we test the method on a 141-bus distribution network case study and compare it to the traditional least squares minimization state estimation method.

24 POWER TRANSMISSION AND DISTRIBUTION↗
DOE OSTI2019

Sample Complexity of Power System State Estimation using Matrix Completion: Preprint

In this paper, we propose an analytical framework to quantify the amount of data samples needed to obtain accurate state estimation in a power system-a problem known as \emph{sample complexity} analysis in computer science. Motivated by the increasing adoption of distributed energy resources into the distribution-level grids, it becomes imperative to estimate the state of distribution grids in order to ensure stable operation. Traditional power system state estimation techniques mainly focus on the transmission network which involve solving an overdetermined system and eliminating bad data. However, distribution networks are typically \emph{underdetermined} due to the large number of connection points and high cost of pervasive installation of measurement devices. In this paper, we consider the recently proposed state-estimation method for underdetermined systems that is based on \emph{matrix completion}. In particular, a \emph{constrained} matrix completion algorithm was proposed, wherein the standard matrix completion problem is augmented with additional equality constraints representing the physics (namely power-flow constraints). We analyze the sample complexity of this general method by proving an upper bound on the sample complexity that depends directly on the properties of these constraints that can lower number of needed samples as compared to the unconstrained problem. To demonstrate the improvement that the constraints add to state estimation, we test the method on a 141-bus distribution network case study and compare it to the traditional least squares minimization state estimation method.

24 POWER TRANSMISSION AND DISTRIBUTION↗
DOE OSTI2023

Lawrence Livermore National Laboratory Experimental Test Site 300 (S300): S300 Roadway Improvements - 817 Complex Soil Sampling and Analysis Plan, Addendum 1 (June 2023)

The purpose of this addendum is to amend and update the S300 Roadway Improvements – 817 Complex [project] Soil Sampling and Analysis Plan (SAP) dated May 2023. Field activities to implement the SAP were completed in May 2023 except for SB-17. SB-17 is therefore included in this addendum. In addition, this addendum amends the SAP by covering an expanded scope of work and project limits. The project limits have been expanded to include areas around Building 818. Sampling at the expanded project area is addressed in this addendum by two additional borings for geotechnical and environmental analyses. The project area consists of the access gate and existing access roads for the Process Area complex. Excavation depths are anticipated to be no deeper than 5 feet from current grade. None of the proposed disturbance areas are within known areas of contamination or mapped controlled excavation area (LLNL 2008). Therefore, this addendum proposes a sampling spacing in the vicinity of Building 818 of about 172 feet (Tier 2) in accordance with the Soil Screening and Management Plan (LLNL 2022). The information contained in this addendum supersedes the May 2023 SAP. However, this addendum only addresses elements of the May 2023 SAP that were modified. Elements of the May 2023 SAP that have not been modified are relevant and will remain in effect.

54 ENVIRONMENTAL SCIENCES↗
DOE OSTI2024

Quantum Circuit Cutting for Classical Shadows

Classical shadow tomography is a sample-efficient technique for characterizing quantum systems and predicting many of their properties. Circuit cutting is a technique for dividing large quantum circuits into smaller fragments that can be executed more robustly using fewer quantum resources. We introduce a divide-and-conquer circuit cutting method for estimating the expectation values of observables using classical shadows. We derive a general formula for making predictions using the classical shadows of circuit fragments from arbitrarily cut circuits and provide the sample complexity analysis for the case when observables factorize across fragments. Then, we numerically show that our divide-and-conquer method outperforms traditional uncut shadow tomography when estimating high-weight observables that act non-trivially on many qubits and discuss the mechanisms for this advantage.

97 MATHEMATICS AND COMPUTING↗
DOE OSTI2023

Lawrence Livermore National Laboratory Experimental Test Site 300 (S300): S300 Roadway Improvements - 817 Complex Soil Sampling and Analysis Plan (May 2023)

This Soil Sampling and Analysis Plan (SAP) was prepared by the Environmental Function Area (EFA)/Technical Services Department (TSD) of the Environment, Safety & Health (ES&H) Directorate for the Project Management Office (PMO) for the proposed Roadway Improvements Project at the 817 Complex (project). The purpose of the SAP was to describe the procedures for collection and analysis of environmental samples and evaluation of analytical data (chemical and radiological) to determine management options of excavated soil during project construction in accordance with Lawrence Livermore National Laboratory’s (LLNL) Soils Screening and Management Plan (SSMP) (LLNL 2022), which was developed in accordance with U.S. Environmental Protection Agency (EPA) guidance for developing Data Quality Objectives for environmental data (EPA 2006) and the Multi-Agency Radiation Survey and Site Investigation Manual (MARSSIM) guidance (U.S. NRC, U.S. EPA, U.S. DOE, and U.S. DOD 2000). The SAP was developed in accordance with the SSMP and based on preliminary design information provided to EFA by PMO.

54 ENVIRONMENTAL SCIENCES↗
DOE OSTI2023

Lawrence Livermore National Laboratory Experimental Test Site 300 (Site 300): Site 300 Roadway Improvements - 836 Complex Soil Sampling and Analysis Plan (May 2023)

This Soil Sampling and Analysis Plan (SAP) was prepared by the Environmental Functional Area (EFA)/Technical Services Department (TSD) of the Environment, Safety & Health (ES&H) Directorate for the Project Management Office (PMO) for the proposed Roadway Improvements Project at the 836 Complex (project). The purpose of the SAP is to describe the procedures for collection and analysis of environmental samples and evaluation of analytical data (chemical and radiological) to determine management options of excavated soil during project construction. This SAP follows criteria established in Lawrence Livermore National Laboratory’s (LLNL) Soils Screening and Management Plan (SSMP) (LLNL 2022), which was formalized in accordance with U.S. Environmental Protection Agency (EPA) guidance for developing Data Quality Objectives for environmental data (EPA 2006) and the Multi-Agency Radiation Survey and Site Investigation Manual (MARSSIM) guidance (U.S. NRC, U.S. EPA, U.S. DOE, and U.S. DOD 2000). The scope of this SAP is based on preliminary design information provided by PMO.

54 ENVIRONMENTAL SCIENCES↗
DOE OSTI2023

Site 300 Roadway Improvements - 834 Complex Soil Sampling and Analysis Plan

This Soil Sampling and Analysis Plan (SAP) was prepared by the Environmental Functional Area (EFA)/Technical Services Department (TSD) of the Environment, Safety & Health (ES&H) Directorate for the Project Management Office (PMO) for the proposed Roadway Improvements Project at the 834 Complex (project) (Figure 1). The purpose of the SAP is to describe the procedures for collection and analysis of environmental samples and evaluation of analytical data (chemical and radiological) to determine management options of excavated soil during project construction. This SAP follows criteria established in Lawrence Livermore National Laboratory’s (LLNL) Soils Screening and Management Plan (SSMP) (LLNL 2022), which was formalized in accordance with U.S. Environmental Protection Agency (EPA) guidance for developing Data Quality Objectives for environmental data (EPA 2006) and the Multi-Agency Radiation Survey and Site Investigation Manual (MARSSIM) guidance (U.S. NRC, U.S. EPA, U.S. DOE, and U.S. DOD 2000). The scope of this SAP is based on preliminary design information provided by PMO.

54 ENVIRONMENTAL SCIENCES↗
DOE OSTI2023

Lawrence Livermore National Laboratory Experimental Test Site, Site 300: S300 Roadway Improvements - 854 Complex Soil Sampling and Analysis Plan (June 2023)

This Soil Sampling and Analysis Plan (SAP) was prepared by the Environmental Functional Area (EFA)/Technical Services Department (TSD) of the Environment, Safety & Health (ES&H) Directorate for the Project Management Office (PMO) for the proposed Roadway Improvements Project at the Building 854 Complex (project). The purpose of the SAP was to identify chemicals of concern, describe the procedures for collection and analysis of environmental samples, and evaluation of analytical data (chemical and radiological) to determine management options of excavated soil during project construction. This SAP follows criteria established in Lawrence Livermore National Laboratory’s (LLNL) Soils Screening and Management Plan (SSMP) (LLNL 2022), which was formalized in accordance with U.S. Environmental Protection Agency (EPA) guidance for developing Data Quality Objectives for environmental data (EPA 2006) and the Multi-Agency Radiation Survey and Site Investigation Manual (MARSSIM) guidance (U.S. NRC, U.S. EPA, U.S. DOE, and U.S. DOD 2000). The scope of this SAP is based on preliminary design information provided by PMO.

54 ENVIRONMENTAL SCIENCES↗
DOE OSTI2025

An Evaluation of Actinide Reactivity with CO 2 , O 2 , and O 2 /He Gases using Inductively Coupled Plasma Tandem Mass Spectrometry: Application to Simultaneous Measurement of 241 Am/ 241 Pu Ratios in Unseparated Complex Matrices

Accurate actinide measurements are critical within the field of nuclear science. Traditional methods for actinide quantification require time-consuming sample processing prior to analysis. There is a need for rapid analytical techniques that still maintain a high degree of accuracy. In this work, actinide reactivity was assessed for multiple oxygen-containing reaction gases using quadrupole inductively coupled plasma tandem mass spectrometry (Q-ICP-MS/MS) to evaluate actinide analysis in complex sample matrices without analyte-matrix separation. A novel method was developed to measure 241 Am/ 241 Pu in complex sample matrices using O 2 /He reaction gas with no matrix removal or analyte pre-concentration. This inline method reduces matrix-derived polyatomic interferences that complicate traditional ICP-MS analyses by mass-shifting to 241 Am 16 O + and 241 Pu 16 O 2 + , allowing Am and Pu to be mass separated for simultaneous analysis. While mass shifting is efficient, a small portion of Am + (<1.3%) and Pu + (<1.4%) react to from AmO 2 + and PuO + , respectively. Therefore, a mass balance approach was used, in combination with reactivity determined from 242 Pu and 243 Am standard solutions, to correct for residual 241 PuO + and 241 AmO 2 + . The method was validated by measuring 241 Am/ 241 Pu in Pu isotope standards CRM-136 and CRM-137 (separated in March/April 1970 and February 2022, respectively) in both neat solutions and complex matrices containing diluted soil (NIST SRM 2711a, >1000 µg·g -1 ). Method detection limits of 15.9 and 9.6 fg·g -1 were determined for 241 Am and 241 Pu, respectively, and 241 Am/ 241 Pu ratios were measured with accuracies within <3.5%. In conclusion, this work presents the first direct analysis of 241 Am/ 241 Pu in unseparated complex matrices, advancing capabilities for rapid actinide measurements.

37 INORGANIC, ORGANIC, PHYSICAL, AND ANALYTICAL CH↗
DOE OSTI2019

Nanowell-mediated multidimensional separations combining nanoLC with SLIM IM-MS for rapid, high-peak-capacity proteomic analyses

Mass spectrometry (MS)–based analysis of complex biological samples is essential for biomedical research and clinical diagnostics. The separation prior to MS plays a key role in the overall analysis, with separations having larger peak capacities often leading to more identified species and improved confidence in those identifications. High-resolution ion mobility (IM) separations enabled by Structures for Lossless Ion Manipulation (SLIM) can provide extremely rapid, high-resolution separations and are well suited as a second dimension of separation following nanoscale liquid chromatography (nanoLC). However, existing sample handling approaches for offline coupling of separation modes require microliter-fraction volumes and are thus not well suited for analysis of trace biological samples. We have developed a novel nanowell-mediated fractionation system that enables nanoLC-separated samples to be efficiently preconcentrated and directly infused at nanoelectrospray flow rates for downstream analysis. When coupled with SLIM IM-MS, the platform enables rapid and high-peak-capacity multidimensional separations of small biological samples. In this study, peptides eluting from a 100 nL/min nanoLC separation were fractionated into ~?60 nanowells on a microfluidic glass chip using an in-house–developed robotic system. The dried samples on the chip were individually reconstituted and ionized by nanoelectrospray for SLIM IM-MS analysis. Using model peptides for characterization of the nanowell platform, we found that at least 80% of the peptide components of the fractionated samples were recovered from the nanowells, providing up to ~tenfold preconcentration for SLIM IM-MS analysis. The combined LC-SLIM IM separation peak capacities exceeded 3600 with a measurement throughput that is similar to current one-dimensional (1D) LC-MS proteomic analyses.

Dou, Maowei↗
DOE OSTI2020

Contributions to Lignomics: Stochastic Generation of Oligomeric Lignin Structures for Interpretation of MALDI–FT‐ICR‐MS Results

The lack of standards to identify oligomeric molecules is a challenge for the analysis of complex organic mixtures. High-resolution mass spectrometry—specifically, Fourier-transform ion cyclotron resonance mass spectrometry (FT-ICR MS)—offers new opportunities for analysis of oligomers with the assignment of formulae (C x H y O z ) to detected peaks. However, matching a specific structure to a given formula remains a challenge due to the inability of FT-ICR MS to distinguish between isomers. Additional separation techniques and other analyses (e.g., NMR spectroscopy) coupled with comparison of results to those from pure compounds is one route for assignment of MS peaks. Unfortunately, this strategy may be impractical for complete analysis of complex, heterogeneous samples. In this study we use computational stochastic generation of lignin oligomers to generate a molecular library for supporting the assignment of potential candidate structures to compounds detected during FT-ICR MS analysis. Furthermore, this approach may also be feasible for other macromolecules beyond lignin.

37 INORGANIC, ORGANIC, PHYSICAL, AND ANALYTICAL CH↗
DOE OSTI2025

Hardware-Efficient Quantum Phase Estimation via Local Control

Quantum phase estimation plays a central role in quantum simulation as it enables the study of spectral properties of many-body quantum systems. Most variants of the phase estimation algorithm require the application of the global unitary evolution conditioned on the state of one or more auxiliary qubits, posing a significant challenge for current quantum devices. In this work, we present an approach to quantum phase estimation that uses only locally controlled operations, resulting in a significantly reduced circuit depth. At the heart of our approach are efficient routines to measure the complex phase of the expectation value of the time-evolution operator, the so-called Loschmidt echo, for both circuit dynamics and Hamiltonian dynamics. By tracking changes in the phase during the dynamics, the routines trade circuit depth for increased sampling cost and classical postprocessing. Our approach does not rely on reference states and is applicable to any efficiently preparable state, regardless of its correlations. We provide a comprehensive analysis of the sample complexity and illustrate the results with numerical simulations. Our methods offer a practical pathway for measuring spectral properties in large many-body quantum systems using current quantum devices.

Schiffer, Benjamin F. [Max Planck Institute of Qua↗
DOE OSTI2019

Development of Ambient Mass Spectrometry Rapid Analysis Methods for Trace Inorganics

Ambient mass spectrometry is being investigated as a new method for rapidly characterizing trace inorganic species, including nuclear materials. SRNL is currently developing electrospray ionization (ESI) and paper spray ionization (PSI) methods for mass spectrometry for the detection of trace inorganic compounds JEOL AccuTOF™-DART ® LP 4G mass spectrometer. Sample analysis generates a complex three-dimensional data set with 10 2 -10 3 individual mass spectra spread temporally. To improve the quality and ease of data extraction from this amount of information, a simple data analysis pipeline written in R/R Studio has been improved and expanded upon. Specifically, the software now has header inputs to set base input/output filenames, isotopes of interest, and a list of concentrations analyzed on the instrument. Using list-based structures to enable batch processing of many concentrations at once, it then loads each file, extracts the relevant intensities for masses of interest from each spectrum, and iterates through each concentration to generate graphs of internal standard & analyte correlations, measured isotope ratios, and total ion chromatograms. It then filters the data to remove points at background levels or at the detector saturation limit. Using this filtered data, the pipeline re-creates the graphs to reveal high-quality information from a low-quality raw dataset. All graphs of the R software then output to PowerPoint format. Additionally, faster 3D visualization functionality was added to the pipeline for viewing the entire data file produced by the instrument as an intensity map. With these data analysis tools ready, samples of strontium nitrate/yttrium nitrate as an analyte/internal standard combination were measured on the AccuTOF. From the filtered data, calibration curves were prepared and limits of detection (LOD) of 1 ppb for ESI-MS and 20 ppb for PSI-MS were obtained. The quality available from the calibration curves and the low limits of detection demonstrate the value of the instrument/analysis pipeline system in characterizing trace inorganics.

47 OTHER INSTRUMENTATION↗
DOE OSTI2024

The Average Spectrum Norm and Near-Optimal Tensor Completion

We propose the average spectrum norm to study the minimum number of measurements required to approximate a multidimensional array (i.e., sample complexity) via low-rank tensor recovery. Our focus is on the tensor completion problem, where the aim is to estimate a multiway array using a subset of tensor entries corrupted by noise. Our average spectrum norm-based analysis provides near-optimal sample complexities, exhibiting dependence on the ambient dimensions and rank that do not suffer from exponential scaling as the order increases.

97 MATHEMATICS AND COMPUTING↗
DOE OSTI2023

A data analysis method to rapidly characterize gallium concentration in plutonium matrices using LIBS

The processing of actinide samples is a complex and costly endeavor that requires compositional analysis at various stages. Laser-induced breakdown spectroscopy (LIBS) has been used to analyze actinide-containing samples in many nuclear applications including waste management, fuel processing and forensics. The LIBS spectrum obtained from actinide materials are generally extremely complex, exhibiting many thousands of strong emission lines. This makes it difficult to identify other elements within the sample of interest, given the rich and dominant actinide spectrum. Here, in this article, we describe a recent effort to identify and quantify impurities and alloying constituents in plutonium matrices using a hand-held LIBS instrument that is used to rapidly and efficiently measure an emission spectrum from a material sample. We tabulate the emission line positions and intensities of plutonium. We report the development of machine-learning software that can identify gallium and quantify its concentration in plutonium matrices. This work has the potential to provide a rapid and nearly non-destructive technique that allows more confidence in characterizing the composition of materials that are present within complex actinide associated targets. We describe how our LIBS measurements and data analysis methods have successfully quantified the gallium concentration in a variety of samples.

37 INORGANIC, ORGANIC, PHYSICAL, AND ANALYTICAL CH↗
DOE OSTI2019

Online, real-time analysis of highly complex processing streams: Quantification of analytes in Hanford tank sample

Processing of hazardous materials is a crucial example of where on-line monitoring can significantly reduce operation risk, cost, and time. This is particularly true in the case of the Hanford site, where nuclear materials from the cold war era are being processed for environmental cleanup efforts. In exceedingly complex streams such as those at Hanford, on-line and real-time monitoring can be a challenge due to complexity of signals. Further obstacles are imposed by the caustic nature of processing streams as well as the radiation damage inflicted on instruments and probes. On-line monitoring based on Raman spectroscopy enables the detection of many Hanford tank species of interest, and was demonstrated here on nine chemical species that comprise the majority of tank waste by volume, including Al(OH)4-, C2O42-, CO32-, CrO42-, NO32-, NO3-, OH-, PO43-, SO42-. Real-time analysis of Raman signal allows for immediate quantification of target analytes and was successfully accomplished through the use of chemometric models. Furthermore, irradiation tests reveal Raman monitoring systems can effectively continue to operate even after receiving 1·107 Rad of gamma dose. The on-line, real-time monitoring system developed here was successfully used to simultaneously quantify nine target analytes in a real samples collected from Hanford tank AP-105.

Lines, Amanda M.↗
DOE OSTI2024

Statistically-driven Experimental Design to Improve Reference-free Quantification of Small Molecules by Liquid Chromatography-Mass Spectrometry

Non-targeted analysis of small molecules and metabolites in unknown, complex samples using liquid chromatography-tandem mass spectrometry remains challenging. One of the main bottlenecks is the extensive unannotated regions of metabolomics mass spectrometry data, resulting in knowledge gaps. Small molecule annotation in mass spectrometry data has conventionally relied on reference standards and libraries for compound identification and confirmation, which can constrain compound identification to those molecules already known, thus limiting the ability to discover new knowledge and new markers. Retention time prediction can facilitate and expedite unknown compound identification in non-targeted analysis of complex metabolomics samples. Additionally, accurate retention time predictions can also inform sample mixture design for LC-MS/MS analyses. However, current machine learning-based methods for retention time prediction are typically developed for specific chromatographic platforms and are not generalizable across scales. And while technologies and methods to improve reference-free metabolite identification for more comprehensive annotation of unknowns has received much attention, development of the same for quantitation without reference standards has been much more limited, despite its importance in toxicological, environmental, food safety, forensics, and clinical applications. We believe that a reference-free quantitation strategy that exploits mass spectrometry data already collected for reference-free identification can provide much more insight on unknowns, and move the metabolomics field for more complete unknowns characterization. As such, we pursue two efforts to improve upon current state-of-the-art methods in non-targeted analysis: (1) machine learning-based retention time prediction and (2) statistical design of experiments framework for reference-free quantitation. In this work, we develop and demonstrate (1) a generalizable retention time prediction capability across chromatographic conditions and scales, and (2) a statistical design-based framework for response factor contribution elucidation and reference-free quantitation. Evaluation of our retention time prediction model, PrediToR, showed approximately 24% improvement over current models, and we observed approximately 10X improvement in concentration estimation accuracy from our statistical design-based response factor model over a primarily ionization efficiency-based model. We expect that future efforts to improve upon these new capabilities will further advance non-targeted analysis of small molecules towards truly reference-free metabolomics.

37 INORGANIC, ORGANIC, PHYSICAL, AND ANALYTICAL CH↗