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At least 19 records

Multi-omics data resource: Data package 22 (Pck022)

In type 1 diabetes (T1D), autoimmune response and inflammation cause the death of pancreatic ß cells, leading to the body’s inability to produce insulin and maintain glucose homeostasis. This process is at least in part mediated by pro-inflammatory cytokines, such as interferon (IFN)a, IFN?, interleukin (IL)-1ß, and tumor necrosis factor (TNF)a, which induce ß-cell dysfunction and apoptosis. A deep understanding of the ß-cell signaling and regulatory networks induced by these cytokines could lead to the identification of therapeutic targets to prevent T1D development. To study cytokine-mediated islets/ß-cell signaling and regulatory networks, a variety of omics experiments have been conducted, including transcriptomics, epigenomics (DNA methylation, UMI-4C, ATAC-seq & ChIP-seq), proteomics (bottom-up, top-down, post-translational modification analysis), lipidomics, and metabolomics. The combination of these datasets can be instrumental in identifying signaling components and regulatory factors involved in ß-cell stress/death. Here, we aggregated these multiple omics datasets into a centralized location, providing a quality-controlled and statistically rigorous resource for investigators seeking to holistically study ß-cell regulation by pro-inflammatory cytokines. The data package consists of isolated pancreatic islets from adult male C57BL6/J mice treated with IL-1β, IFNγ or IL-1β + IFNγ for 6 h and submitted for scRNA-seq. This study focused on understanding the heterogeneity of the cytokine-mediated response. Data contributors: Jennifer S Stancill & John A Corbett: Department of Biochemistry, Medical College of Wisconsin, Milwaukee, WI, USA Data repository: GSE156175 Publication: 10.26508/lsa.202000949

Sarkar, Soumyadeep [Pacific Northwest National Lab↗

Multi-omics data resource: Data package 23 (Pck023)

The data package consists of isolated pancreatic islets from adult male C57BL6/J mice treated with IL-1β + IFNγ, IL-1β + IFNγ + NMMA, or NMMA alone for 18 h and submitted for scRNA-seq. This study focused on the cell-type-specific effects of nitric oxide signaling in islets and characterized the heterogeneity of responses. Data contributors: Jennifer S Stancill & John A Corbett: Department of Biochemistry, Medical College of Wisconsin, Milwaukee, WI, USA Data repository: GSE183010 Publication: 10.1093/function/zqab063

Sarkar, Soumyadeep [Pacific Northwest National Lab↗

Multi-omics data resource: Data package 24 (Pck024)

The data package consists of isolated pancreatic islets from 3 human donors treated with IL-1β, IFNγ or IL-1β + IFNγ for 6 h and IL-1β, IFNγ, IL-1β + IFNγ, IL-1β + IFNγ + NMMA or NMMA for 18 h and submitted for scRNA-seq. This study examines cytokine-stimulated changes in gene expression in human islets using single-cell RNA sequencing. Data contributors: Jennifer S Stancill & John A Corbett: Department of Biochemistry, Medical College of Wisconsin, Milwaukee, WI, USA Data repository: GSE251730 Publication: 10.1093/function/zqae015

Sarkar, Soumyadeep [Pacific Northwest National Lab↗

Multi-omics data resource: Data package 25 (Pck025)

This data package comprises omics datasets from human pancreatic islets treated with IL-1β + IFNγ or with estrogen (E2) for 18 h. Two RNA-seq datasets are available: the first is a discovery dataset involving human islets treated with or without IL-1β + IFNγ for 18 hours; the second is a validation dataset, where human islets are treated with or without IL-1β + IFNγ or E2 for 18 hours. DIA proteomic analysis was performed on the same validation dataset samples. Data contributors: Kiersten L. Webster, Sarah Tersey & Raghavendra G. Mirmir: Kovler Diabetes Center and Department of Medicine, The University of Chicago, Chicago, IL, 60637, USA. Soumyadeep Sarkar, Raghavendra Mirmira, Ernesto S. Nakayasu: Biological Sciences Division, Pacific Northwest National Laboratory, Richland, WA, 99354, USA. Data repository: RNA-seq: GSE310965 Proteomics: MSV000101892 Publication: PMID 41279069

Sarkar, Soumyadeep [Pacific Northwest National Lab↗

An open-source computational and data resource to analyze digital maps of immunopeptidomes

We present a novel proteomics-based workflow and an open source data and computational resource for reproducibly identifying and quantifying HLA-associated peptides at high-throughput. The provided resources support the generation of HLA allele-specific peptide assay libraries consisting of consensus fragment ion spectra and the analysis of quantitative digital maps of HLA peptidomes generated by SWATH mass spectrometry (MS). This is the first community-based study towards the development of a robust platform for the reproducible and quantitative measurement of HLA peptidomes, an essential step towards the design of efficient immunotherapies.

Environmental Molecular Sciences Laboratory↗

Uses of earth resources data in the NASA/MSC Earth Resources Research Data Facility.

The operation of the Earth Resources Research Data Facility (ERRDF) in Clear Lake City, Texas, which contains both aircraft and spacecraft gathered information on remote sensing of earth resources, including geology, geography, agriculture, forestry, hydrology, and oceanography, is described in detail. Possible uses of ERRDF data for further studies and applications are discussed.

Zeitler, E. O.↗

Wind and solar resource data sets

The range of resource data sets spans from static cartography showing the mean annual wind speed or solar irradiance across a region to high temporal and high spatial resolution products that provide detailed information at a potential wind or solar energy facility. These data sets are used to support continental-scale, national, or regional renewable energy development; facilitate prospecting by developers; and enable grid integration studies. This review first provides an introduction to the wind and solar resource data sets, then provides an overview of the common methods used for their creation and validation. A brief history of wind and solar resource data sets is then presented, followed by areas for future research.

14 SOLAR ENERGY↗

The influence of cloud cover on the reliability of satellite-based solar resource data

Satellite-based solar resource data are often developed and validated by using binary cloudiness categories: clear sky or overcast cloudy sky. To investigate the reliability of solar resource data in partially cloudy conditions, we estimate cloud fraction using two distinct algorithms: a physical retrieval model using surface observed global horizontal irradiance (GHI) and direct normal irradiance (DNI) and a temporal average of cloud mask data estimated by the observed DNI. Our analysis reveals a significant presence of scattered clouds, broken clouds, and mismatches between satellite- and surface-based cloud data at 17 surface sites across the contiguous United States, though confidently clear and cloudy conditions collectively account for more than 70 % of the data. Solar radiation is computed using the National Solar Radiation Database (NSRDB) algorithm and validated using surface observations. Here, our findings suggest that, in the presence of scattered clouds, NSRDB data for clear-sky conditions can be subject to significant overestimation. In cloudy-sky conditions classified by satellite data, DNI computed by the Fast All-sky Radiation Model for Solar applications with DNI (FARMS-DNI) can be underestimated when limited clouds are detected by surface observations. The bias observed in several cloudiness categories indicates that the NSRDB is exceptionally accurate in confidently clear conditions. However, clear-sky conditions with scattered clouds and mismatched cloud data contribute significantly to the overall uncertainties in the NSRDB. Therefore, future improvements in solar resource data should involve development and implementation of satellite-derived cloud fraction and should consider a novel radiative transfer model accounting for amplified cloud reflection. The evaluation within cloudiness categories also provides a physical rationale for the superior performance of FARMS-DNI compared to the Direct Insolation Simulation Code (DISC) in both cloudy-sky and all-sky conditions.

14 SOLAR ENERGY↗

Automatic Detection of Clear-Sky Periods Using Ground and Satellite Based Solar Resource Data

Solar resource availability and variability are important aspects of monitoring performance of photovoltaic installations. For example, recent degradation studies have highlighted the importance of considering cloud cover when calculation degradation rates. With this in mind, we present a method for optimizing clear sky detection algorithms given only modeled clear sky irradiance and ground-measured irradiance values. This method is tested on global horizontal irradiance (GHI) data from ground collectors at six sites across the US and was trained against clear sky classifications determined from satellite data. Thirty models were optimized on each individual site at GHI data frequencies of 1, 5, 10, 15, and 30 minutes. The models had an average F 0.5 score of 0.945 +/- .021 on a holdout test set. In comparison, the un-optimized clear sky detection algorithm produced F 0.5 score that averaged to 0.707 +/- 0.187.

14 SOLAR ENERGY↗

A computer software system for integration and analysis of grid-based remote sensing data with other natural resource data. Remote Sensing Project

A computer-based information system is described designed to assist in the integration of commonly available spatial data for regional planning and resource analysis. The Resource Analysis Program (RAP) provides a variety of analytical and mapping phases for single factor or multi-factor analyses. The unique analytical and graphic capabilities of RAP are demonstrated with a study conducted in Windsor Township, Eaton County, Michigan. Soil, land cover/use, topographic and geological maps were used as a data base to develope an eleven map portfolio. The major themes of the portfolio are land cover/use, non-point water pollution, waste disposal, and ground water recharge.

Tilmann, S. E.↗

A computer software system for integration and analysis of grid-based remote sensing data with other natural resource data

This report describes a computer-based information system designed to assist in the integration of commonly available spatial data for regional planning and resource analysis. The Resource Analysis Program (RAP) provides a variety of analytical and mapping phases for single factor or multi-factor analyses. The unique analytical and graphic capabilities of RAP are demonstrated with a study conducted in Windsor Township, Eaton County, Michigan. For this study, soil, land cover/use, topographic and geological maps were used as a data base to develop an eleven map portfolio. The major themes of the portfolio are land cover/use, nonpoint water pollution, waste disposal, and ground water recharge.

Tilmann, S. E.↗

Towards a Validation Protocol for Satellite-Based Solar Resource Data

Satellite-based solar resource data are valued for their spatial extensiveness and long temporal record. Validation of such data, including accurate assessment of their uncertainties against reference datasets, is essential to give users confidence in and maximum benefit from the data. More broadly, the international Earth observation from space community estimates many geophysical parameters from satellite data, such as, to name just a few, precipitation, sea surface temperature and atmospheric aerosol amount. This community has made considerable progress in developing standard validation protocols for numerous satellite-derived parameters, protocols that recommend best practices to support benchmarking and comparison of satellite datasets. This paper explores some of the elements that could be included in a validation protocol for satellite solar resource data. The elements are illustrated using satellite and surface based solar data over Australia. Keywords: solar resource, satellite, validation, protocol

POWER TRANSMISSION AND DISTRIBUTION,SOLAR ENERGY↗

The Protein Data Bank archive as an open data resource

The Protein Data Bank archive was established in 1971, and recently celebrated its 40th anniversary (Berman et al. in Structure 20:391, 2012). Here, an analysis of interrelationships of the science, technology and community leads to further insights into how this resource evolved into one of the oldest and most widely used open-access data resources in biology.

59 BASIC BIOLOGICAL SCIENCES↗

High-Resolution Wind Resource Data Set of the Greater Puerto Rico Region

In February 2022, the U.S. Department of Energy and six national laboratories launched the Puerto Rico Grid Resilience and Transitions to 100% Renewable Energy Study (PR100). PR100 aims to provide a comprehensive analysis of possible pathways for Puerto Rico's energy future, with a goal of 100% renewable energy by 2050. As a part of the renewable energy potential assessment in this project, we developed 20 years (2001-2020) of data using a numerical weather prediction (NWP) model for onshore and offshore wind resource assessment for the Puerto Rico. The research steps in developing the long-term wind resource data sets based on the NWP model were: 1. Model wind resource based on the Weather Research and Forecasting (WRF) model. 2. Develop WRF model configurations for Puerto Rico. 3. Test WRF with 11 different physics parameterizations for planetary boundary layer (PBL). 4. Assess WRF output from the different PBL schemes against observations. 5. Select a final model configuration which can produce the modeled wind speed with sufficient accuracy. 6. Produce 20 years wind resource data sets for Puerto Rico region. In the first stage of our framework for developing wind resource data, we developed a WRF model configuration using two nested domains (9 km and 3 km) to cover Puerto Rico and U.S. Virgin Islands and downscale the ERA5 reanalysis data (0.25 degrees x 0.25 degrees; hourly interval) to a 3-km domain. For the second stage, we implemented one-year simulations focused on using 11 different PBL physics parameterizations to find a combination of WRF physics parameterizations that could provide accurately modeled wind speed for Puerto Rico. We also analyzed the sensitivity of the modeled wind speed to PBL schemes for onshore and offshore locations. The WRF output resulting from the 11 WRF experiments using different PBL parameterizations were evaluated against observations obtained from the National Data Buoy Center (NDBC) as well as at hub height for a location for which measurements were available. A final model setup selected through the validation with observational data was used to produce 20 years of data with 3-km spatial and 5-minute temporal resolution. The WRF model output was post-processed to include wind profiles and basic atmospheric variables in a format that can be easily used for downstream modeling. The 20 years of wind resource data will be made available through NREL and support the estimation of wind energy development costs for the PR100 study.

17 WIND ENERGY↗

Super-Resolution for Renewable Energy Resource Data with Climate Change Impacts (Sup3rCC)

The Super-Resolution for Renewable Energy Resource Data with Climate Change Impacts (Sup3rCC) data is a collection of 4km hourly wind, solar, temperature, humidity, and pressure fields for the contiguous United States under various climate change scenarios. Sup3rCC is downscaled Global Climate Model (GCM) data. The downscaling process was performed using a generative machine learning approach called sup3r: Super-Resolution for Renewable Energy Resource Data (linked below as "Sup3r GitHub Repo"). The data includes both historical and future weather years, although the historical years represent the historical climate, not the actual historical weather that we experienced. You cannot use Sup3rCC data to study historical weather events, although other sup3r datasets may be intended for this. The Sup3rCC data is intended to help researchers study the impact of climate change on energy systems with high levels of wind and solar capacity. Please note that all climate change data is only a representation of the possible future climate and contains significant uncertainty. Analysis of multiple climate change scenarios and multiple climate models can help quantify this uncertainty.

Array↗

Methodology for Clustering High-Resolution Spatiotemporal Solar Resource Data

In this report, we introduce a methodology to achieve multiple levels of spatial resolution reduction of solar resource data, with minimal impact on data variability, for use in energy systems modeling. The selection of an appropriate clustering algorithm, parameter selection including cluster size, methods of temporal data segmentation, and methods of cluster evaluation are explored in the context of a repeatable process. In describing this process, we illustrate the steps in creating a reduced resolution, but still viable, dataset to support energy systems modeling, e.g. capacity expansion or production cost modeling. This process is demonstrated through the use of a solar resource dataset; however, the methods are applicable to other resource data represented through spatiotemporal grids, including wind data. In addition to energy modeling, the techniques demonstrated in this paper can be used in a novel top-down approach to assess renewable resources within many other contexts that leverage variability in resource data but require reduction in spatial resolution to accommodate modeling or computing constraints.

32 ENERGY CONSERVATION, CONSUMPTION, AND UTILIZATI↗

Tidal Resource Data from Sequim Bay Inlet, WA, August 2020

Data from a Nortek Signature1000 deployed on a lander for 14 days in Aug 2020 in the entrance to Sequim Bay, WA. Raw data were processed using the DOLfYN python package and standardized using the ME Data Pipeline python package, tsdat version 0.2.12. Processed data were partitioned into 24 hour increments and saved in the NETCDF file format.

16 TIDAL AND WAVE POWER↗