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At least 19 records
All sourcesNASA NTRSDOE OSTI
DOE OSTI2021

Metagenomic analysis reveals global-scale patterns of ocean nutrient limitation

Genomes reveal nutrient stress patterns Within the surface ocean, nitrogen, iron, and phosphorous can all be limiting nutrients for phytoplankton depending on location. Ustick et al. used the prevalence of Prochlorococcus genes involved in nutrient acquisition to develop maps of inferred nutrient stress across the global ocean (see the Perspective by Coleman). They found broad patterns of limitation consistent with an Earth system model and nutrient addition experiments. Leveraging metagenomic data in this manner is an appealing approach that will help to expand our understanding of the biogeochemistry in the vast open ocean. Science , this issue p. 287 ; see also p. 239

Science & Technology - Other Topics↗
DOE OSTI2023

Pangeo-Enabled ESM Pattern Scaling (PEEPS): A customizable dataset of emulated Earth System Model output

Emulation through pattern scaling is a well-established method of rapidly producing climate fields (like temperature or precipitation) from existing Earth System Model (ESM) output that, while inaccurate, is often useful for a variety of downstream purposes. Conducting pattern scaling has historically been a laborious process, in large part due to the increasing volume of ESM output data that has often required downloading and storing locally to train on. Here we describe the Pangeo-Enabled ESM Pattern Scaling (PEEPS) dataset, a repository of trained annual and monthly patterns from CMIP6 outputs. This manuscript describes and validates these updated patterns so that users can save effort calculating and reporting error statistics in manuscripts focused on the use of patterns. The trained patterns are available as NetCDF files on Zenodo for ease of use in the impact community, and are reproducible with the code provided via GitHub in both Jupyter notebook and Python script formats. Because all training data for the PEEPS data set is cloud-based, users do not need to download and house the ESM output data to reproduce the patterns in the zenodo archive, should that be more efficient. Validating the PEEPS data set on the CMIP6 archive for annual and monthly temperature, precipitation, and near-surface relative humidity, pattern scaling performs well over a variety of future scenarios except for regions in which there are strong, potentially nonlinear climate feedbacks. Although pattern scaling is normally conducted on annual mean ESM output data, it works equally well on monthly mean ESM output data. We identify several downstream applications of the PEEPS data set, including impacts assessment and evaluating certain types of Earth system uncertainties.

54 ENVIRONMENTAL SCIENCES↗
DOE OSTI2020

Climate mediates continental scale patterns of stream microbial functional diversity

Understanding the large-scale patterns of microbial functional diversity is essential for anticipating climate change impacts on ecosystems worldwide. However, studies of functional biogeography remain scarce for microorganisms, especially in freshwater ecosystems. Here we study 15,289 functional genes of stream biofilm microbes along three elevational gradients in Norway, Spain and China. We find that alpha diversity declines towards high elevations and assemblage composition shows increasing turnover with greater elevational distances. These elevational patterns are highly consistent across mountains, kingdoms and functional categories and exhibit the strongest trends in China due to its largest environmental gradients. Across mountains, functional gene assemblages differ in alpha diversity and composition between the mountains in Europe and Asia. Climate, such as mean temperature of the warmest quarter or mean precipitation of the coldest quarter, is the best predictor of alpha diversity and assemblage composition at both mountain and continental scales, with local non-climatic predictors gaining more importance at mountain scale. Under future climate, we project substantial variations in alpha diversity and assemblage composition across the Eurasian river network, primarily occurring in northern and central regions, respectively. We conclude that climate controls microbial functional gene diversity in streams at large spatial scales; therefore, the underlying ecosystem processes are highly sensitive to climate variations, especially at high latitudes. This biogeographical framework for microbial functional diversity serves as a baseline to anticipate ecosystem responses and biogeochemical feedback to ongoing climate change.

59 BASIC BIOLOGICAL SCIENCES↗
NASA NTRS1990

Large-scale patterns of eolian sediment transport on Venus - Predictions for Magellan

The atmosphere of Venus is likely to exert a major influence on the surface. Arecibo and Venera 15/16 observations of the population of impact craters with bright halos give direct evidence of surface modification, on the scale of centimeters, to smooth the surface on time scales of 50 - 250 my. Both chemical and mechanical modifications probably occur. Diurnal winds in the planetary boundary layer can transport particles. Using boundary layer theory, including the effects of topography, surface stresses and resulting transport and deposition of sand-size particles are calculated. Regional slopes are sites of largest surface stresses. Sand will be generally transported downhill, although there is a preferential net transport from east to west, in the same direction as the atmospheric superrotation. It is predicted here that streaks may be seen in the Magellan radar images which will indicate directions of net eolian transport on the surface of Venus.

Saunders, R. S.↗
DOE OSTI2026

Enhanced Manganese Oxidation at the Biofilm–Fluid Interface Drives Pore-Scale Patterns in Mineral Precipitation

Microbial oxidation of manganese (Mn) from aqueous Mn(II) to solid-phase Mn(III, IV) minerals catalyzes Mn(II) removal in natural and engineered porous systems. However, little is known about the spatiotemporal evolution of Mn biomineralization in confined spaces that experience simultaneous Mn(II) delivery and Mn oxide precipitation. Here, we combine time-lapse microscopy, image analysis, and mass spectrometry to quantify the extent and rate of Mn biomineralization by Pseudomonas putida GB-1 in an optically transparent two-dimensional porous medium. We found that Mn(II) oxidation initially occurred within biofilms but shifted over time toward the edges of biofilms in contact with pore fluid. Minerals precipitated outside of the initial biofilm footprint likely due to surface-mediated oxidation of Mn(II) by nascent biogenic Mn oxides, reinforcing a gradient in mineral accumulation from the Mn(II) source near the reactor inlet to the outlet. The rate of mineral precipitation outside the biofilm footprint surpassed the rate of mineral accumulation inside biofilms within 6 h and accounted for two-thirds of the total Mn oxide mass in the pore space at the end of the experiment. This work advances a mechanistic understanding of coupled biotic and abiotic Mn oxidation in porous environments while providing a novel platform to quantify microbe-mineral-fluid interactions.

Biofilms↗
DOE OSTI2020

Continental-scale patterns of extracellular enzyme activity in the subsoil: an overlooked reservoir of microbial activity

Abstract Chemical stabilization of microbial-derived products such as extracellular enzymes (EE) onto mineral surfaces has gained attention as a possibly important mechanism leading to the persistence of soil organic carbon (SOC). While the controls on EE activities and their stabilization in the surface soil are reasonably well-understood, how these activities change with soil depth and possibly diverge from those at the soil surface due to distinct physical, chemical, and biotic conditions remains unclear. We assessed EE activity to a depth of 1 m (10 cm increments) in 19 soil profiles across the Critical Zone Observatory Network, which represents a wide range of climates, soil orders, and vegetation types. For all EEs, activities per mass of soil correlated positively with microbial biomass (MB) and SOC, and all three of these variables decreased logarithmically with depth ( p < 0.05). Across all sites, over half of the potential EE activities per mass soil consistently occurred below 20 cm for all measured EEs. Activities per unit MB or SOC were substantially higher at depth (soils below 20 cm accounted for 80% of whole-profile EE activity), suggesting an accumulation of stabilized (i.e. mineral sorbed) EEs in subsoil horizons. The pronounced enzyme stabilization in subsurface horizons was corroborated by mixed-effects models that showed a significant, positive relationship between clay concentration and MB-normalized EE activities in the subsoil. Furthermore, the negative relationships between soil C, N, and P and C-, N-, and P-acquiring EEs found in the surface soil decoupled below 20 cm, which could have also been caused by EE stabilization. This finding suggests that EEs may not reflect soil nutrient availabilities deeper in the soil profile. Taken together, our results suggest that deeper soil horizons hold a significant reservoir of EEs, and that the controls of subsoil EEs differ from their surface soil counterparts.

37 INORGANIC, ORGANIC, PHYSICAL, AND ANALYTICAL CH↗
DOE OSTI2024

Aridity and forest age mediate landscape scale patterns of tropical forest resistance to cyclonic storms

Abstract Cyclonic storms, or hurricanes, are expected to intensify as ocean heat energy rises due to climate change. Ecological theory suggests that tropical forest resistance to hurricanes should increase with forest age and wood density. However, most data on hurricane effects on tropical forests come from a limited number of well‐studied long‐term monitoring sites, restricting our capacity to evaluate the resistance of tropical forests to hurricanes across broad environmental gradients. In this study, we assessed whether forest age and aridity mediate the effects of hurricanes Irma and Maria in Puerto Rico, Vieques and Culebra islands. We leveraged functional trait data for 410 tree species, remotely sensed measurements of canopy height and cover, along with data on forest stand characteristics of 180 of 338 forest monitoring plots, each covering an area of 0.067 ha. The plots represent a broad mean annual precipitation (MAP) gradient from 701 to 4598 mm and a complex mosaic of forest age from 5 to around 85 years since deforestation. Hurricanes resulted in a 25% increase in basal area mortality rates, a 45% decrease in canopy height and a 21% reduction in canopy cover. These effects intensified with forest age, even after considering proximity to the hurricane path. The links between forest age and hurricane disturbances were likely due the prevalence of tall canopies. Tall forest canopies were strongly linked with low community‐weighted wood density (WD). These characteristics were on average more common in moist and wet forests (MAP >1250 mm). Conversely, dry forests were dominated by short species with high wood density (WD > 0.6 g cm −3 ) and did not show significant increases in basal area mortality rates after the hurricanes. Synthesis . Our findings show that selection towards drought‐tolerant traits across aridity gradients, such as short stature and dense wood, enhances resistance to hurricanes. However, forest age modulated responses to hurricanes, with older forests being less resistant across the islands. This evidence highlights the importance of considering the intricate links between ecological succession and plant function when forecasting tropical forests’ responses to increasingly strong hurricanes.

Vargas G., German↗
DOE OSTI2023

Two Large-Scale Meteorological Patterns are Associated with Short-Duration Dry Spells in the Northeastern United States

Large-scale meteorological pattern (LSMP)–based analysis is used in a novel way to understand meteorological conditions before and during short-duration dry spells over the northeastern United States. These LSMPs are useful to assess models and select better-performing models for future projections. Dry-spell events are identified from histograms of consecutive dry days below a daily precipitation threshold. Events lasting 12 days or longer, which correspond to ~10% of dry-spell events, are examined. The 500-hPa stream-function anomaly fields for the first 12 days of each event are time averaged, and k -means clustering is applied to isolate the dry-spell-related LSMPs. The first cluster has a strong low pressure anomaly over the Atlantic Ocean, southeast of the region, and is more common in winter and spring. The second cluster has strong high pressure over east-central North America and is most common during autumn. Over the region, both clusters have negative specific humidity anomalies, negative integrated vapor transport from the north, and subsidence associated with a midlatitude jet stream dipole structure that reinforces upper-level convergence. Subsidence is supported by cold-air advection in the first cluster and the location on the east side of the lower-level high pressure in the second cluster. Extratropical cyclone storm tracks are generally shifted southward of the region during the dry spells. Individual events lie on a continuum between two distinct clusters. These clusters have similar local, but different remote, properties. Although dry spells occur with greater frequency during drought months, most dry spells occur during nondrought months. Significance Statement: This study examines the large-scale weather patterns and meteorological conditions associated with dry-spell events lasting at least 2 weeks while affecting the northeastern United States. A statistical approach groups events together on the basis of similar atmospheric features. We find two distinct sets of patterns that we call large-scale meteorological patterns. These patterns reduce moisture, foster localized sinking, and shift the storm track southward along the Atlantic seaboard, all of which reduce precipitation. Besides greater understanding, knowing the meteorological patterns during short-term dryness in the region provides an important tool to assess how well atmospheric models reproduce these specific patterns. More dry spells occur in non-drought months than in drought months, which means that dry spells can occur without preexisting drought conditions.

58 GEOSCIENCES↗
DOE OSTI2020

Linking large-scale circulation patterns to low-cloud properties

Abstract. The North Pacific High (NPH) is a fundamental meteorological feature present during the boreal warm season. Marine boundary layer (MBL) clouds, which are persistent in this oceanic region, are influenced directly by the NPH. In this study, we combine 11 years of reanalysis and an unsupervised machine learning technique to examine the gamut of 850 hPa synoptic-scale circulation patterns. This approach reveals two distinguishable regimes – a dominant NPH setup and a land-falling cyclone – and in between a spectrum of large-scale patterns. We then use satellite retrievals to elucidate for the first time the explicit dependence of MBL cloud properties (namely cloud droplet number concentration, liquid water path, and shortwave cloud radiative effect – CRESW) on 850 hPa circulation patterns over the northeast Pacific Ocean. We find that CRESW spans from −146.8 to −115.5 W m−2, indicating that the range of observed MBL cloud properties must be accounted for in global and regional climate models. Our results demonstrate the value of combining reanalysis and satellite retrievals to help clarify the relationship between synoptic-scale dynamics and cloud physics.

54 ENVIRONMENTAL SCIENCES↗
NASA NTRS2003

Real-time, Quasi-Global, Multi-Satellite Precipitation Analysis Using TRMM and other Satellite Observations

A TRMM-based 3-hr analyses that use TRMM observations to calibrate polar-orbit microwave observations from SSM/I (and other satellites) and geosynchronous IR observations and merges the various calibrated observations into a final, 3-hr resolution map is described. This TRMM standard product will be available for the entire TRMM period (January 1998-present) in 2003 as part of Version 6 of the TRMM products. A real-time version of this merged product is being produced and is available at 0.25" latitude-longitude resolution over the latitude range from 50 N-500S. Examples will be shown, including its use in monitoring flood conditions and in relating weather-scale patterns to climate-scale patterns. Plans to incorporate the TRMM data and 3-hourly analysis into the Global Precipitation Climatology Project (GPCP) products are outlined. The outcome in the near future should be an improved global analysis and climatology on monthly scales for the 23 year period and finer time scale analyses for more recent periods, including 3-hourly analyses over the globe. These technique developments are potential prototypes for analyses with the Global Precipitation Measurement (GPM) mission.

Adler, Robert F.↗
NASA NTRS2002

Global Precipitation Analysis Using Satellite Observations

Global precipitation analysis covering the last few decades and the impact of the new TRMM (Tropical Rainfall Measuring Mission) observations are reviewed in the context of weather and climate applications. All the data sets discussed are the result of mergers of information from multiple satellites and gauges, where available. The focus of the talk is on TRMM-based 3 hr. analyses that use TRMM to calibrate polar-orbit microwave observations from SSM/I (and other satellites) and geosynchronous IR observations and merges the various calibrated observations into a final, 3 hr. resolution map. This TRMM standard product will be available for the entire TRMM period (January 1998-present) at the end of 2002. A real-time version of this merged product is being produced and is available at 0.25 deg latitude-longitude resolution over the latitude range from 50 deg N-50 deg S. Examples will be shown, including its use in monitoring flood conditions and in relating weather-scale patterns to climate-scale patterns. The 3-hourly analysis is placed in the context of two research products of the World Climate Research Program's (WCRP/GEWEX) Global Precipitation Climatology Project (GPCP). The first is the 23 year, monthly, globally complete precipitation analysis that is used to explore global and regional variations and trends and is compared to the much shorter TRMM tropical data set. The GPCP data set shows no significant global trend in precipitation over the twenty years, unlike the positive trend in global surface temperatures over the past century. Regional trends are also analyzed. A trend pattern that is a combination of both El Nino and La Nina precipitation features is evident in the Goodyear data set. This pattern is related to an increase with time in the number of combined months of El Nino and La Nina during the 23 year period. Monthly anomalies of precipitation are related to ENSO variations with clear signals extending into middle and high latitudes of both hemispheres. Also shown is the GPCP daily, 1 deg latitude-longitude analysis, which is available from January 1997 to the present. Plans to incorporate the TRMM data and 3-hourly analysis into the GPCP products are outlined. The outcome should be an improved global analysis and climatology on monthly scales for the 23 year period and finer time scale analyses for more recent periods, including real-time 3-hourly (or finer) analyses over much of the globe.

Adler, Robert F.↗
NASA NTRS2004

Global, Multi-Satellite Precipitation Analysis at Fine Time Scales using TRMM Plus other Satellites

A TRMM-based 3-hr analyses that uses TRMM observations to calibrate polar-orbit microwave observations from SSM/I (and other satellites, including AMSR on AQUA and ADEOS II) and geosynchronous IR observations is described. The various calibrated observations are combined into a final, 3-hr resolution map. This TRMM standard product will be available for the entire TRMM period (January 1998-present) in 2003 as product 3B-42 of the TRMM Version 6. A real-time version of this merged product is being produced and is available on the U.S. TRMM web site (trmm.gsfc.nasa.gov) at 0.25 degrees latitude-longitude resolution over the latitude range from 50 degrees N-50 degrees S. Examples will be shown, including its use in monitoring flood conditions and in relating weather-scale patterns to climate-scale patterns. Incorporation of this approach into the Global Precipitation Climatology Project (GPCP) will also be discussed.

Adler, Robert↗
NASA NTRS1990

Properties of the large- and small-scale flow patterns in and around AR 19824

A series of magnetograms spanning just over 5 days and covering about 4 x 5 arcmin has been used to trace the photospheric motions of 170 concentrations of magnetic flux tubes in and around the decaying active region 19824. A persistent large-scale flow pattern superposed on small-scale random motions of both polarities is noted whose overall pattern resembles the flow of a river around a sand bar, and whose long-term evolution suggests a persistence of several months. The observed motions of concentrations of flux tubes are corrected for the large-scale flow in order to study their random motions.

Schrijver, C. J.↗
NASA NTRS2019

North American Extreme Precipitation Events and Related Large-Scale Meteorological Patterns: a Review of Statistical Methods, Dynamics, Modeling, and Trends

This paper surveys the current state of knowledge regarding Large-Scale Meteorological Patterns (LSMPs) associated with short-duration (less than one week) extreme precipitation events over North America. In contrast to teleconnections, which are typically defined based on the characteristic spatial variations of a meteorological field or on the remote circulation response to a known forcing, LSMPs are defined relative to the occurrence of a specific phenomenon—here, extreme precipitation—and with an emphasis on the synoptic scales that have a primary influence in individual events, have medium-range weather predictability, and are well-resolved in both weather and climate models. For the LSMP relationship with extreme precipitation, we consider the previous literature with respect to definitions and data, dynamical mechanisms, model representation, and climate change trends. There is considerable uncertainty in identifying extremes based on existing observational precipitation data and some limitations in analyzing the associated LSMPs in reanalysis data. Many different definitions of “extreme” are in use, making it difficult to directly compare different studies. Dynamically, several types of meteorological systems—extratropical cyclones, tropical cyclones, mesoscale convective systems, and mesohighs—and several mechanisms—fronts, atmospheric rivers, and orographic ascent—have been shown to be important aspects of extreme precipitation LSMPs. The extreme precipitation is often realized through mesoscale processes organized, enhanced, or triggered by the LSMP. Understanding of model representation, trends, and projections for LSMPs is at an early stage, although some 4 promising analysis techniques have been identified and the LSMP perspective is useful for evaluating model dynamics.

Mathew Barlow↗
NASA NTRS1993

Observational and modeling studies of heat, moisture, precipitation, and global-scale circulation patterns

The research sponsored by this grant is a continuation and an extension of the work conducted under a previous contract, 'South Pacific Convergence Zone and Global-Scale Circulations'. In the prior work, we conducted a detailed investigation of the South Pacific convergence zone (SPCZ), and documented many of its significant features and characteristics. We also conducted studies of its interaction with global-scale circulation features through the use of both observational and modeling studies. The latter was accomplished toward the end of the contract when Dr. James Hurrell, then a Ph.D. candidate, successfully ported the NASA GLA general circulation model (GCM) to Purdue University. In our present grant, we have expanded our previous research to include studies of other convectively-driven circulation systems in the tropics besides the SPCZ. Furthermore, we have continued to examine the relationship between these convective systems and global-scale circulation patterns. Our recent research efforts have focused on three objectives: (1) determining the periodicity of large-scale bands of organized convection in the tropics, primarily synoptic to intraseasonal time scales in the Southern Hemisphere; (2) examining the relative importance of tropical versus mid-latitude forcing for Southern Hemisphere summertime subtropical jets, particularly over the Pacific Ocean; and (3) estimating tropical precipitation, especially over oceans, using observational and budget methods. A summary list of our most significant accomplishments in the past year is given.

Vincent, Dayton G.↗
DOE OSTI2020

Emulating climate extreme indices

We use simple pattern scaling and time-shift to emulate changes in a set of climate extreme indices under future scenarios, and evaluate the emulators' accuracy. We propose a metric for the error in emulation in the context of initial condition ensembles, to specifically characterize the role of internal variability in the emulation performance. Our metric separates systematic emulation errors from unavoidable discrepancies between emulated and target values due to internal variability. We compute the metricis at grid-point scale, and we show geographically resolved results, or aggregate them at global scale. We demonstrate the use of our error metric in the emulation of a suite of temperature and precipitation extreme indices. We test and compare simple pattern scaling and time-shift using a range of trajectories spanning targets inspired by the Paris agreement -- warming to 1.5C and 2.0C from the pre-industrial baseline -- and two of the longer-established trajectories, RCP4.5 and RCP8.5. With this suite of scenarios we can test the effects on the performance of the size of the temperature gap between emulation origin and target. We find that for most indices emulation the dominant source of discrepancy is internal variability. For at least one index, however, counting exceedances of a high temperature threshold, significant portions of the globally aggregated discrepancy and its regional pattern originate from the systematic emulation error. This error exceeds internal variability of both the target and the emulated quantities in large coherent regions at low latitudes, and the explanation can be found in the differential behavior of temperature distributions across latitudes. The metric also highlights a fundamental difference in the two methods related to the simulation of internal variability, which is dampened significantly by simple pattern scaling. This aspect is of consequence when using these methods for specific applications, where preserving variability for uncertainty quantification is deemed important. With this study we offer our metric as a diagnostic tool, facilitating the formulation of scientific hypotheses on the reasons for the error. In the meantime, we show that for many impact relevant indices by now traditional emulation techniques can be accurate within the variations unavoidably introduced by internal variability, establishing the fundamental condition for using their emulation in impact modeling.

54 ENVIRONMENTAL SCIENCES↗
NASA NTRS2015

North American Extreme Temperature Events and Related Large Scale Meteorological Patterns: A Review of Statistical Methods, Dynamics, Modeling, and Trends

The objective of this paper is to review statistical methods, dynamics, modeling efforts, and trends related to temperature extremes, with a focus upon extreme events of short duration that affect parts of North America. These events are associated with large scale meteorological patterns (LSMPs). The statistics, dynamics, and modeling sections of this paper are written to be autonomous and so can be read separately. Methods to define extreme events statistics and to identify and connect LSMPs to extreme temperature events are presented. Recent advances in statistical techniques connect LSMPs to extreme temperatures through appropriately defined covariates that supplement more straightforward analyses. Various LSMPs, ranging from synoptic to planetary scale structures, are associated with extreme temperature events. Current knowledge about the synoptics and the dynamical mechanisms leading to the associated LSMPs is incomplete. Systematic studies of: the physics of LSMP life cycles, comprehensive model assessment of LSMP-extreme temperature event linkages, and LSMP properties are needed. Generally, climate models capture observed properties of heat waves and cold air outbreaks with some fidelity. However they overestimate warm wave frequency and underestimate cold air outbreak frequency, and underestimate the collective influence of low-frequency modes on temperature extremes. Modeling studies have identified the impact of large-scale circulation anomalies and landatmosphere interactions on changes in extreme temperatures. However, few studies have examined changes in LSMPs to more specifically understand the role of LSMPs on past and future extreme temperature changes. Even though LSMPs are resolvable by global and regional climate models, they are not necessarily well simulated. The paper concludes with unresolved issues and research questions.

Cold Spells↗