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Search indexed NASA NTRS and DOE OSTI research on propulsion, heat transfer, battery materials and energy systems. Follow report and document links to the original sources.

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All sourcesNASA NTRSDOE OSTI
DOE OSTI2025

BioPortal: an open community resource for sharing, searching, and utilizing biomedical ontologies

Abstract BioPortal (https://bioportal.bioontology.org) is the world’s most comprehensive repository of biomedical ontologies. It provides infrastructure for finding, sharing, searching, and utilizing biomedical ontologies. Launched in 2005, BioPortal now includes 1549 ontologies (1182 of them public). Its open, freely accessible website enables anyone (i) to browse the ontology library, (ii) to search for terms across ontologies, (iii) to browse mappings between terms, (iv) to see popularity ratings and recommendations on which ontologies are most relevant to their use cases, (v) to annotate text with ontology terms, (vi) to submit an ontology, and (vii) to request ontology changes. The library of ontologies can be accessed programmatically via a REST application programming interface (API). Recent enhancements include a BioPortal knowledge graph that integrates knowledge from multiple ontologies; a unified data model for interoperability with other knowledge sources; ontology popularity ratings and recommendations for relevant ontologies; and the ability to request ontology changes via a simple user interface that automatically converts user change requests to GitHub Pull Requests that specify the edits that will be made to the ontology upon approval.

Vendetti, Jennifer↗
DOE OSTI2025

Enhancing tandem mass spectrometry-based metabolite annotation with online chemical labeling

Abstract Metabolite identification in non-targeted mass spectrometry-based metabolomics remains a major challenge due to limited spectral library coverage and difficulties in predicting metabolite fragmentation patterns. Here, we introduce Multiplexed Chemical Metabolomics (MCheM), which employs orthogonal post-column derivatization reactions integrated into a unified mass spectrometry data framework. MCheM generates orthogonal structural information that substantially improves metabolite annotation through in silico spectrum matching and open-modification searches, offering a powerful new toolbox for the structure elucidation of unknown metabolites at scale.

Science & Technology - Other Topics↗
DOE OSTI2026

Enhancing New Physics Searches with a Future Beam Dump Configuration at SBND

Accelerator-based neutrino experiments, especially those with high-intensity beams and highly capable detectors, offer a powerful and complementary method for probing new physics scenarios. The MiniBooNE experiment at Fermilab pioneered a special Booster Neutrino Beam (BNB) beam dump run and set new limits on sub-GeV dark matter. This white paper explores the physics opportunities enabled by operating the Short-Baseline Near Detector (SBND) at Fermilab in a future BNB beam dump configuration. Redirecting the proton beam away from the default target suppresses neutrino backgrounds, enabling SBND to significantly enhance sensitivity to many new physics scenarios. We evaluate two operational scenarios – off-target mode and a new dedicated beam dump mode – and demonstrate that both approaches can open new avenues in the search for physics beyond the Standard Model. We present two example cases, scalar dark matter and heavy neutral leptons via axion-like particle.

Dutta, Bhaskar [TAMU, College Station]↗
DOE OSTI2026

A Solid State Zwitterionic Plastic Crystal With High Static Dielectric Constant

Solid materials with a high dielectric constant have a wide range of applications in the energy storage field. In this research, an imidazolium-based zwitterion is designed, synthesized, and confirmed to have a plastic crystal phase based on the following experimental and computational evidence: (i) the presence of long-range order with weak intermolecular forces and competing attractive-repulsive interactions along different crystallographic directions; (ii) the observation of more than one endotherm on heating including a solid-solid phase transition at T s-s = −26 °C and melting of the plastic crystal at T m = 72°C; (iii) a low entropy of fusion at melting (2.1 JK −1 mol −1 ); (iv) a strongly anisotropic morphology; (v) relatively fast dynamics originating from short-range degrees of freedom. Furthermore, it exhibits a very high dielectric constant in the plastic crystal solid state (147 at −10°C and 103 at 70°C) due to the rotational degrees of freedom of plastic crystals that arise from weak net intermolecular interactions of zwitterions due to only having two carbons between the anion and cation. This material conveniently remains in the plastic crystal phase within 50 K of ambient temperature. This discovery opens new opportunities in the search for solid-state high dielectric constant materials.

dielectric relaxation↗
DOE OSTI2024

Probing bottom-associated production of a TeV scale scalar decaying to a top quark and dark matter at the LHC

Abstract A minimal non-thermal dark matter model that can explain both the existence of dark matter and the baryon asymmetry in the universe is studied. It requires two color-triplet, iso-singlet scalars with$$ \mathcal{O}\left(\textrm{TeV}\right) $$ O TeV masses and a singlet Majorana fermion with a mass of$$ \mathcal{O}\left(\textrm{GeV}\right) $$ O GeV . The fermion becomes stable and can play the role of the dark matter candidate. We consider the fermion to interact with a top quark via the exchange of QCD-charged scalar fields coupled dominantly to third generation fermions. The signature of a single top quark production associated with a bottom quark and large missing transverse momentum opens up the possibility to search for this type of model at the LHC in a way complementary to existing monotop searches.

Physics↗
DOE OSTI2026

A Comment on “Deep Proteogenomics of a Photosynthetic Cyanobacterium”

Proteomic researchers strive to achieve complete annotation of protein-coding DNA sequences to provide a foundational context for their relevant biological data. A recent deep proteogenomic study using a photosynthetic cyanobacterium Synechocystis sp. PCC 6803 by Spät et al. proposed 64 refined open reading frames (ORFs). By searching LC-MS/MS data from affinity chromatography-isolated protein complexes, our laboratory identified that six of these high-abundance ORFs possess Nterminal initiation start sites that differ than those proposed in the alternative models. Our findings are supported by highly confident MS2 data, phylogenetic analysis, chemical labeling, and established data from two independent research groups. Based on these highquality experimental identifications, we subsequently propose a standardized strategy and set of criteria for future deep proteogenomic efforts to ensure accurate and stringent proteogenomic annotation.

cyanobacteria↗
DOE OSTI2024

Axion stars: mass functions and constraints

The QCD axion and axion-like particles, as leading dark matter candidates, can also have interesting implications for dark matter substructures if the Peccei-Quinn symmetry is broken after inflation. In such a scenario, axion perturbations on small scales will lead to the formation of axion miniclusters at matter-radiation equality, and subsequently the formation of axion stars. Such compact objects open new windows for indirect searches for axions. We compute the axion star mass function based on recent axion minicluster studies and Bose star simulations. Applying this mass function, we find post-inflation axion-like particles with masses 1.8 × 10$^{-21}$ eV

72 PHYSICS OF ELEMENTARY PARTICLES AND FIELDS↗
DOE OSTI2025

Integrase-on-Demand

SAND2025-07449O Integrase-on-Demand is a software tool that allows users to identify regions in genomic sequences where genetic material can be integrated with high probability. It uses a database of integrases and their DNA attachment sites to search against any genomic sequence, producing a list of open sites, the integrase sequence, and the source of the genomic island. The program requires MASH software to be available on the system. It consists of a main script and a precomputed input file, with a taxonomy mode that searches closely related genomes and a search mode that looks for identical attachment site matches in the integrase/attachment input file. Sandia National Laboratories is a multimission laboratory managed and operated by National Technology & Engineering Solutions of Sandia, LLC, a wholly owned subsidiary of Honeywell International Inc., for the U.S. Department of Energy’s National Nuclear Security Administration under contract DE-NA0003525.

Williams, Kelly [Sandia National Lab. (SNL-CA), Li↗
DOE OSTI2024

Linking NH$^+_4$ motion to magnetism in molecular multiferroic (NH 4 ) 2 ⁢[FeCl 5 ⁢(H 2 ⁢O)]: A neutron vibrational spectroscopy study

Here, we present a neutron vibrational spectroscopy study to investigate the influence of NH$^+_4$ motion on the magnetism in [(NH 4 ) 1–x K x ] 2 ⁢[FeCl 5 ⁢(H 2 ⁢O)]. The parent compounds, (NH 4 ) 2 ⁢[FeCl 5 ⁢(H 2 ⁢O)] (x = 0) and K 2 ⁡[FeCl 5 ⁢(H 2 ⁢O)]⁢(x = 1) are isostructural at room temperature, yet displaying drastically different magnetic and multiferroic behavior. K 2 ⁡[FeCl 5 ⁢(H 2 ⁢O)] is nonmultiferroic with type-A collinear antiferromagnetic structure below T N ≈ 14.06 K, whereas (NH 4 ) 2 ⁢[FeCl 5 ⁢(H 2 ⁢O)] is a type-II multiferroic with incommensurate cycloidal spin structure below T FE ≈ 6.8 K. A recent study of the dielectric, structure, and magnetic properties in the mixed [(NH 4 ) 1–x ⁢K x ] 2 ⁢[FeCl 5 ⁢(H 2 ⁢O)] shows that a small amount of potassium substitution to replace NH$^+_4$ transforms the spin structure from incommensurate cycloidal (x ≤ 0.06) into commensurate collinear antiferromagnetic (x ≥ 0.15), indicating NH$^+_4$ is essential to the emergent phenomena observed in this molecular multiferroic compound. Our vibrational spectroscopy study reveals that NH$^+_4$ libration and torsion motion exhibit substantial temperature dependence at low temperatures. The intensity of NH$^+_4$ libration and torsion modes increases slightly at 5 K in comparison with data at 25 K behaving like a magnon, indicating that they are coupled to the magnetism in (NH 4 ) 2 ⁢[FeCl 5 ⁢(H 2 ⁢O)]. Comparing data of x=0, 0.06, 0.09, and 0.15 samples further illustrates that the strength of the increased signal in NH$^+_4$ libration mode is very sensitive to potassium concentration. The signal diminishes quickly with increasing potassium concentration and vanishes in the x = 0.15 sample corresponding to the magnetic structure change for x ≥ 0.15. The results directly link the anomalous behavior in NH$^+_4$ libration motion to the magnetism in [(NH 4 ) 1–x ⁢K x ] 2 ⁢[FeCl 5 ⁢(H 2 ⁢O)], providing new insights into the crucial role NH$^+_4$ plays in the coupled phenomena in (NH 4 ) 2 ⁢[FeCl 5 ⁢(H 2 ⁢O)]. The unique information opens a new door to go through in searching for new multifunctional materials by incorporation of NH 4 via a material-by-design approach.

75 CONDENSED MATTER PHYSICS, SUPERCONDUCTIVITY AND↗
DOE OSTI2024

Production of meson molecules in ultraperipheral heavy ion collisons

In this work we present a calculation of exotic charmonium production in ultraperipheral collisions, in which the exotic state is explicitly treated as a meson molecule. Our formalism is general, but we focus on the lightest possible exotic charmonium state: a 𝐷 + ⁢𝐷 − molecular bound state. It was proposed some time ago, and it has been an object of experimental searches. Here we study the production of the open charm pair in the process 𝛾⁢𝛾 → 𝐷 + ⁢𝐷 − . Then we use a prescription to project the free pair |𝐷 + ⁢𝐷 − ⟩ onto a bound state at the amplitude level and compute the cross section of the process 𝛾⁢𝛾 → 𝐵 (where 𝐵 is the bound state). Finally, we convolute this last cross section with the equivalent photon distributions coming from the projectile and target in an ultraperipheral collision and find the 𝐴⁢𝐴 → 𝐴⁢𝐴⁢𝐵 cross section, which, for 𝑃⁢𝑏 −𝑃⁢𝑏 collisions at $\sqrt{s_{NN}}$ =5.02 TeV, is of the order of 3 μ⁢b.

Sobrinho, F. C.↗
DOE OSTI2026

polars-dovmed (dovmed) v0.1.0

polars-dovmed is a python package for text search and extraction from NCBI's PubMed Central Open Access subset. It is powered by the polars dataframe library and leverages modern file formats (parquet) to efficiently scan public literature.

Roux, Simon [Lawrence Berkeley National Laboratory↗
DOE OSTI2025

Sparks in the dark

This study presents a novel method for the definition of signal regions in searches for new physics at collider experiments. By leveraging multi-dimensional histograms with precise arithmetic and utilizing the SparkDensityTree library, it is possible to identify high-density regions within the available phase space, potentially improving sensitivity to very small signals. Inspired by a search for dark mesons at the ATLAS experiment, CMS open data is used for this proof-of-concept intentionally targeting an already excluded signal. Signal regions are defined based on density estimates of signal and background. These preliminary regions align well with the physical properties of the signal while effectively rejecting background events.

Gudnadottir, Olga Sunneborn [Uppsala Univ. (Sweden↗
DOE OSTI2024

Review of searches for vector-like quarks, vector-like leptons, and heavy neutral leptons in proton–proton collisions at $\sqrt{s} = 13$ TeV at the CMS experiment

The LHC has provided an unprecedented amount of proton–proton collision data, bringing forth exciting opportunities to address fundamental open questions in particle physics. These questions can potentially be answered by performing searches for very rare processes predicted by models that attempt to extend the standard model of particle physics. The data collected by the CMS experiment in 2015–2018 at a center-of-mass energy of 13 TeV can be used to test the standard model with high precision and potentially uncover evidence for new particles or interactions. An interesting possibility is the existence of new fermions with masses ranging from the MeV to the TeV scale. Such new particles appear in many possible extensions of the standard model and are well motivated theoretically. New fermions may explain the appearance of three generations of leptons and quarks, the mass hierarchy across these generations, and the nonzero neutrino masses. In this report, the results of searches targeting vectorlike quarks, vector-like leptons, and heavy neutral leptons at the CMS experiment are summarized. The complementarity of current searches for each type of new fermion is discussed, and combinations of several searches for vector-like quarks are presented. The discovery potential for some of these searches at the High-Luminosity LHC is also discussed.

72 PHYSICS OF ELEMENTARY PARTICLES AND FIELDS↗
DOE OSTI2025

A search for Heavy Neutral Leptons with masses up to 150 MeV and studies on scintillation light detection in SBND

Introduction Neutrino physics is one of today’s most promising fields in particle physics. The discovery of neutrino oscillations is an evidence of their mass not being null. However, the Standard Model of elementary particles (SM) does not contain a mechanism that generates them, so we have to search beyond the SM to find answers. Other unknowns remain open, such as the amount of CP symmetry violated in the lepton sector that could help explain the differences between matter and antimatter that formed the present universe. Nor is it understood why these particles are so light, more than six orders of magnitude below the next fermion, the electron. A possible explanation is the existence of heavier neutrino mass states usually referred as heavy neutral leptons (HNLs). One of the most advanced technologies for detecting neutrino interactions is the liquid argon time projection chamber (LArTPC). LArTPC detectors form a 3D image of the ionized electrons in the interaction, producing a detailed description of each neutrino event. Argon is also a prolific scintillator (40k photons/MeV) with light signals indicating the interaction time. The Short-Baseline Near Detector (SBND), a 112-active mass LArTPC at Fermilab, will measure millions of neutrino interactions from the Booster Neutrino Beam (BNB). As the near (L=110 m) detector of the Short-Baseline neutrino program, SBND will search for a fourth light neutrino (∼ eV) in the coming years. This hypothesis could explain the anomalous data observed in the LSND and MiniBooNE experiments.

Álvarez Garrote, Rodrigo [Madrid U.] (ORCID:000000↗
DOE OSTI2024

The "PVLib" of Degradation: PVDeg

The Photovoltaic (PV) industry constantly aims for lower costs through higher-efficiency cells, improved module designs, and improvements in durability. This leads to the use of new materials, designs, and manufacturing processes, and not always with a sufficient amount of durability testing. To help drive down costs there is a desire to create modules that will last for up to 50 years of service life. To accomplish this, every degradation mode and mechanism must be identified and either eliminated or otherwise mitigated. This involves the extrapolation of laboratory results to the field conditions. There is a need to organize the existing degradation data into an accessible format and to provide industry relevant tools for extrapolation from laboratory to field conditions. While the basic equations used to model degradation are sometimes very simple, the full analysis involves calculations are cumbersome but ubiquitous for many degradation processes. A simplified, modeling framework to accomplish these repetitive processes will facilitate the analysis to help researchers keep up with the rapid pace of technological changes. In this talk, we will describe our progress creating the open-source tool PVDeg. This tool can be used to search for and analyze degradation information and extrapolate PV module performance and durability to field exposure. PVDeg simplifies many of the common foundational computational operations for obtaining meteorological data and using it to generate a model of the PV deployment. This prediction tool repository also contains various degradation models as well as a library of material parameters suitable for estimating the durability assessment of materials and components. We use an integration pipeline approach that allows us to leverage weather data from the National Solar Radiation Database, and other weather sources, to perform geospatial degradation analysis in the US and worldwide. We hope to become a repository that can be used for weathering and degradation analysis for various applications beyond the PV industry. During the talk, we will provide the PVPMC attendees the opportunity to interact with the tool via a Google Collab tutorial they can run on their phones or laptops.

durability↗
DOE OSTI2025

Surrogate Neural Architecture Codesign Package (SNAC-Pack)

Neural Architecture Search is a powerful approach for automating model design, but existing methods struggle to accurately optimize for real hardware performance, often relying on proxy metrics such as bit operations. We present Surrogate Neural Architecture Codesign Package (SNAC-Pack), an integrated framework that automates the discovery and optimization of neural networks focusing on FPGA deployment. SNAC-Pack combines Neural Architecture Codesign's multi-stage search capabilities with the Resource Utilization and Latency Estimator, enabling multi-objective optimization across accuracy, FPGA resource utilization, and latency without requiring time-intensive synthesis for each candidate model. We demonstrate SNAC-Pack on a high energy physics jet classification task, achieving 63.84% accuracy with resource estimation. When synthesized on a Xilinx Virtex UltraScale+ VU13P FPGA, the SNAC-Pack model matches baseline accuracy while maintaining comparable resource utilization to models optimized using traditional BOPs metrics. This work demonstrates the potential of hardware-aware neural architecture search for resource-constrained deployments and provides an open-source framework for automating the design of efficient FPGA-accelerated models.

Weitz, Jason [UC, San Diego] (ORCID:00090004631535↗
DOE OSTI2026

Chemical Recommender System: Replacement Suggestions for Small Molecules

The Chemical Recommender System (CRS) is an open-source, high-performance toolkit that enables real-time similarity searches across the complete PubChem database (over 50 million molecules) using commodity hardware. The CRS addresses critical limitations in existing chemical informatics platforms through a novel vector database infrastructure, extensible model integration capabilities, and complete algorithmic transparency. The system implements a vector database deployment with partitioned indexing that achieves a ~60x speedup over traditional approaches. A containerized model integration framework allows researchers to seamlessly incorporate custom predictive models into the full-scale search and scoring pipeline, while complete configurability of search parameters, filtering logic, and scoring functions provides capabilities not available in existing black-box solutions. Beyond structural similarity, the CRS integrates OPERA QSAR models for thermophysical and toxicity predictions, RDKit synthetic accessibility scoring, and user-defined models to compute weighted final replacement scores. The complete system is accessible through an interactive web application supporting real-time progress monitoring, post-processing score re-weighting, automated PDF reporting, and batch processing capabilities.

Nair, Parthiv Anand [Sandia National Laboratories ↗