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All sourcesNASA NTRSDOE OSTI
NASA NTRS2024

Tracking Community Building in Open Science

Open Science is enabled by a vibrant community of researchers who regularly engage with the data, from its production to its organization, curation, archiving, dissemination, analysis, and publication. This presentation will examine community building in open science. The NASA Open Science Data Repository (OSDR) makes data available to the public following the FAIR (Findability, Accessibility, Interoperability, and Reusability) principles. OSDR takes open science further with the OS Analysis Working Groups (AWGs) that facilitate community development and promotion. The primary activity of each AWG is to establish and validate analytical processes to generate higher-order data from data housed in OSDR. There are a number of these groups on various topics, including the Animal AWG, Plant AWG, Microbial AWG, Multi-Omics AWG, AI/ML AWG, and the Ames Life Sciences Data Archive (ALSDA) AWG. The international volunteers participating in these AWGs come from academia, citizen science initiatives, industry, and government. They include researchers, principal investigators, professors, trained hobbyists, and students from various domains and disciplines. Anyone may request to join the AWGs, and membership requests are vetted monthly by the group organizers before granting admission. Core to membership is demonstrated expertise through records of training, integrity, work in the professed domain(s), and good community standing. Regular virtual meetings are held for each AWG, with a varying cadence depending on the group's needs and goals. AWG communities share their expertise in research including cutting edge tools, software, frameworks, data formats, and libraries accelerating research collectively. This collaborative approach helps community members cross technology gaps and identify emerging challenges. These diverse communities encompass a wide range of individuals hailing from various sectors within the Science Mission Directorate and beyond. They serve as a means to promote and enhance transparency, accessibility, and inclusion. An annual AWG Symposium brings contributors together in person. Participation in AWGs can be synchronous or asynchronous, with some groups performing most of their work in off hours. Participants gain valuable skills and connections that allow them to add value to their communities and new organizations that they join, resulting in an expanded return on investment for the space life science community. Open science is increasingly a federal mandate and initiatives like NASA's Transform to Open Science and instruments like the Decadal Survey of Biological and Physical Sciences in Space demonstrate the need to carefully consider best practices in this domain. Here, we present greater detail about the makeup and participation metrics of the various AWGs affiliated with OSDR and details of successful peer-reviewed publication campaigns.

Christina M Johnson↗
NASA NTRSDate not supplied

Tracking Community Building in Open Science

Open Science is enabled by a vibrant community of researchers who regularly engage with the data, from its production to its organization, curation, archiving, dissemination, analysis, and publication. This presentation will examine community building in open science. The NASA Open Science Data Repository (OSDR) makes data available to the public following the FAIR (Findability, Accessibility, Interoperability, and Reusability) principles. OSDR takes open science further with the OS Analysis Working Groups (AWGs) that facilitate community development and promotion. The primary activity of each AWG is to establish and validate analytical processes to generate higher-order data from data housed in OSDR. There are a number of these groups on various topics, including the Animal AWG, Plant AWG, Microbial AWG, Multi-Omics AWG, AI/ML AWG, and the Ames Life Sciences Data Archive (ALSDA) AWG. The international volunteers participating in these AWGs come from academia, citizen science initiatives, industry, and government. They include researchers, principal investigators, professors, trained hobbyists, and students from various domains and disciplines. Anyone may request to join the AWGs, and membership requests are vetted monthly by the group organizers before granting admission. Core to membership is demonstrated expertise through records of training, integrity, work in the professed domain(s), and good community standing. Regular virtual meetings are held for each AWG, with a varying cadence depending on the group's needs and goals. AWG communities share their expertise in research including cutting edge tools, software, frameworks, data formats, and libraries accelerating research collectively. This collaborative approach helps community members cross technology gaps and identify emerging challenges. These diverse communities encompass a wide range of individuals hailing from various sectors within the Science Mission Directorate and beyond. They serve as a means to promote and enhance transparency, accessibility, and inclusion. An annual AWG Symposium brings contributors together in person. Participation in AWGs can be synchronous or asynchronous, with some groups performing most of their work in off hours. Participants gain valuable skills and connections that allow them to add value to their communities and new organizations that they join, resulting in an expanded return on investment for the space life science community. Open science is increasingly a federal mandate and initiatives like NASA's Transform to Open Science and instruments like the Decadal Survey of Biological and Physical Sciences in Space demonstrate the need to carefully consider best practices in this domain. Here, we present greater detail about the makeup and participation metrics of the various AWGs affiliated with OSDR and details of successful peer-reviewed publication campaigns.

Christina M Johnson↗
NASA NTRS2025

NASA Open Science Data Repository: Open Science for Life in Space

Space biology and health data are critical for the success of deep space missions and sustainable human presence off-world. At the core of effectively managing biomedical risks is the commitment to open science principles, which ensure that data are findable, accessible, interoperable, reusable, reproducible and maximally open. The 2021 integration of the Ames Life Sciences Data Archive with GeneLab to establish the NASA Open Science Data Repository significantly enhanced access to a wide range of life sciences, biomedical-clinical, and mission telemetry data alongside existing ‘omics data from GeneLab. This paper describes the new database, its architecture, and new data streams supporting diverse data types and enhancing data submission, retrieval, and analysis. Features include the Biological Data Management Environment for improved data submission, a new user interface, controlled data access, an enhanced API, and comprehensive public visualization tools for environmental telemetry, radiation dosimetry data, and ‘omics analyses. By fostering global collaboration through its Analysis Working Groups and training programs, the Open Science Data Repository promotes widespread engagement in space biology, ensuring transparency and inclusivity in research. It supports the global scientific community in advancing our understanding of spaceflight's impact on biological systems, ensuring humans will thrive in future deep space missions.

OSDR↗
NASA NTRSDate not supplied

Exploring Blockchain to Support Open Science Practices

Open science aims to foster transparent sharing of scientific processes including open access, incentivization, provenance, open source code and tools, metrics, and resource sharing. However, effective management of these processes remains a challenge. This paper explores the application of blockchain technology to address these key aspects of open science. Blockchain offers a decentralized and secureplatform for information exchange and verification. By leveraging blockchain, open science can enhance transparency and reproducibility. In this paper, we present an implementation of blockchain for Earth science data synchronization across organizations, enabling tracking of data copying, citation, anddownload. The findings highlight the potential of blockchain in supporting open science objectives.

Iksha Gurung↗
NASA NTRSDate not supplied

Open Science for Plants in Space: Improvements in NASA's Open Science Data Repository

Upcoming deep space missions will rely on plants for crew and ecosystem health. Open access space biology data enables scientists to examine the biological responses of plants to ionizing radiation, altered gravity, elevated CO2, and many other abiotic stressors. NASA has declared 2023 as the ‘Year of Open Science’ and created a 5-year Transform to Open Science (TOPS) initiative designed to rapidly transform the agency toward an inclusive culture of open science. NASA’s Open Science Data Repository (OSDR) combines two databases, GeneLab and Ames Life Sciences Data Archive (ALSDA) to maximize access to standardized ‘omics (e.g., transcriptomics, proteomics) and phenotypic data (e.g., microscopy, biomass), respectively. Current OSDR standards include the ISA (Investigation-Study-Assay) experiment model, assay metadata configurations, and standardized terminology and ontologies. In 2024 OSDR will include a new suite of features for improved FAIR compliance including downloadable plant metadata templates, data submission tools and overall improved AI-readiness of plant datasets. AI/ML methods can be helpful tools to overcome the inherent challenges of space biology research (small sample size, sparse and heterogeneous data etc.). However these methods are built on an assumption of normalized and well-curated data. OSDR’s new curation tools will improve users ability to leverage ML and AI methods to model space biology data and better understand the complex effects of spaceflight on living systems across hierarchical biological levels. We look forward to sharing our advances with the spaceflight community.

FAIR↗
NASA NTRSDate not supplied

The Science Discovery Engine: An Open Science Success Story

NASA is committed to building an inclusive open science community over the next decade and is championing the new Open-Source Science Initiative (OSSI) to foster that community. The OSSI is made up of a number of activities including the development of an empowering cyberinfrastructure to accelerate the time to actionable science. One component of the OSSI cyberinfrastructure is the Science Discovery Engine (SDE). The goal of the SDE is to enable the discovery of data, software and documentation across the five SMD divisions including Astrophysics, Biological and Physical Sciences, Earth Science, Heliophysics and Planetary Science. The SDE increases accessibility to the wealth of NASA’s open science data and information. In this presentation, we will present our collaborative work to date to build the SDE and our vision for empowering open source science in the future.

Kaylin Bugbee↗
NASA NTRSDate not supplied

Advancing Open Science in Atmospheric Research: Integrating Data Usability and Machine Learning

In the dynamic realm of atmospheric sciences, the convergence of data science methodologies and open data marks a transformative era, driving research advancements and nurturing aspiring scientists. This abstract highlights two pivotal projects that epitomize open science principles, aligning seamlessly with the session's objective of interdisciplinary synergy and the cultivation of emerging talent. As a NASA-certified data center, our foremost endeavor focuses on enhancing the visibility and traceability of NASA datasets within atmospheric science research. This initiative not only elevates these datasets' prominence but also establishes a robust framework ensuring their credibility in scholarly discourse. By bridging the gap between data sources and research publications, this project serves as an educational catalyst, nurturing a new generation of scholars in open collaboration and dataset authenticity. Concurrently, our second project pioneers an early warning system for flooding events, utilizing machine learning algorithms to predict flooded fractions. Through multi-source data fusion and predictive modeling, this initiative goes beyond forecasting; it embodies the core of open science by enabling proactive risk mitigation strategies. This project not only advances atmospheric sciences but also fosters an environment where young scholars engage in practical, data-driven solutions. These intertwined projects exemplify the fusion of data science with open data solutions, ensuring both the usability of quality datasets and the cultivation of scientific knowledge among emerging scholars. By spotlighting these impactful use cases, our aim is to foster discussions emphasizing the importance of open collaboration, data integrity, and the nurturing of scientific talent in atmospheric sciences." "In the dynamic realm of atmospheric sciences, the convergence of data science methodologies and open data marks a transformative era, driving research advancements and nurturing aspiring scientists. This abstract highlights two pivotal projects that epitomize open science principles, aligning seamlessly with the session's objective of interdisciplinary synergy and the cultivation of emerging talent. As a NASA-certified data center, our foremost endeavor focuses on enhancing the visibility and traceability of NASA datasets within atmospheric science research. This initiative not only elevates these datasets' prominence but also establishes a robust framework ensuring their credibility in scholarly discourse. By bridging the gap between data sources and research publications, this project serves as an educational catalyst, nurturing a new generation of scholars in open collaboration and dataset authenticity. Concurrently, our second project pioneers an early warning system for flooding events, utilizing machine learning algorithms to predict flooded fractions. Through multi-source data fusion and predictive modeling, this initiative goes beyond forecasting; it embodies the core of open science by enabling proactive risk mitigation strategies. This project not only advances atmospheric sciences but also fosters an environment where young scholars engage in practical, data-driven solutions. These intertwined projects exemplify the fusion of data science with open data solutions, ensuring both the usability of quality datasets and the cultivation of scientific knowledge among emerging scholars. By spotlighting these impactful use cases, our aim is to foster discussions emphasizing the importance of open collaboration, data integrity, and the nurturing of scientific talent in atmospheric sciences.

Jennifer Wei↗
NASA NTRS2014

Physical Science Informatics: Providing Open Science Access to Microheater Array Boiling Experiment Data

The Physical Science Informatics (PSI) system is the next step in this an effort to make NASA sponsored flight data available to the scientific and engineering community, along with the general public. The experimental data, from six overall disciplines, Combustion Science, Fluid Physics, Complex Fluids, Fundamental Physics, and Materials Science, will present some unique challenges. Besides data in textual or numerical format, large portions of both the raw and analyzed data for many of these experiments are digital images and video, requiring large data storage requirements. In addition, the accessible data will include experiment design and engineering data (including applicable drawings), any analytical or numerical models, publications, reports, and patents, and any commercial products developed as a result of the research. This objective of paper includes the following: Present the preliminary layout (Figure 2) of MABE data within the PSI database. Obtain feedback on the layout. Present the procedure to obtain access to this database.

nucleate boiling↗
NASA NTRSDate not supplied

NASA's Science Discovery Engine: Enabling Interdisciplinary Open Science

NASA is currently implementing capabilities to enable open science access. The Science Discovery Engine (SDE) is a major endeavor in this effort. The SDE supports discovery and access to complex, heterogeneous science data and information across science topical areas.

Kaylin Mclendon Bugbee↗
NASA NTRSDate not supplied

Scientific Content Curation in an Open Science Era

Today’s open science environment, in combination with the Big Data era, means more scientific data, software, tools, documentation, publications and other resources are available than ever. The promise of the open science era is that scientists will spend less time reinventing the wheel and more time doing actionable research. Yet navigating this vast and complex information landscape can feel overwhelming to scientists trying to get their bearings. In this presentation, we define and discuss the importance of scientific content curation for enhancing discovery and use of scientific data and information. We also share two examples of scientific content curation in action: the Catalog of Archived Suborbital Earth Science Investigations (CASEI) and the Science Discovery Engine (SDE).

Kaylin Bugbee↗
NASA NTRS2022

Opening Up to Open Science

More inclusive open science can help solve society’s most pressing problems—and at a faster pace—but making it mainstream requires systemic institutional change.

Chelle Gentemann↗
NASA NTRSDate not supplied

Demonstrating the Promise and Problems for Open Science in Heliophysics

The recent push towards open science comes with a new set of problems to address. The additional work required to align a project with even the concepts of open science is at best problematic and typically not reasonably possible. The issue is further complicated by the lack of supporting infrastructure for the requirements of open science. We present the first executable paper in heliophysics as an example of how a collaboration between scientists, software developers, and software engineers can streamline the research process. This novel approach to science enables the science result to more easily adhere to the concepts of open science through the application of technology from inception to publication. We also use this paper to demonstrate gaps in our infrastructure that currently prevent progress in our pursuit of open science. This presentation is meant to initiate discussions of the methods and gaps presented, and we hope the discussion will be productive.

infrastructure↗
NASA NTRSDate not supplied

Developing a Vision for Maturing the Heliophysics Infrastructure towards Open Science

In the dawn of open science and the upcoming requirements, we speak about the existing state of Heliophysics infrastructure and detail the evolution required to address capability or interconnection shortcomings. Such a daunting barrier calls for an analysis ecosystem with multi-faceted capability. We propose such an ecosystem, called DIARieS, to be built upon five conceptual pillars: Discovery, Implementation, Analysis, Reproducibility, and Sharing of results. The combination of these concepts in a single platform will enable users to more intuitively combine recent advances in technology to create ‘DIARieS’ of their workflows, which can be easily made open to others in the community. The DIARieS ecosystem will also increase our efficiency by streamlining our various workflow processes, including automatic incorporation of the impending requirements of open science. The various components of the ecosystem will simplify software installation and data implementation, including automatically generated citation lists based on the components included. Automatic containerization and version control of the ecosystem will make the custom workflows easily reproducible. Employing widget technology will ease the difficulty of producing publication and commercial quality visualizations and applying common analyses techniques. Incorporating multiple technologies will streamline the various sharing methods common in our work environments today. Overall, the totality of capabilities to be offered by this analysis ecosystem will drastically simplify the application of open science principles to our work in addition to improving our efficiency and ease of collaboration.

Infrastructure↗
NASA NTRSDate not supplied

Open Science Practices at the Community Coordinated Modeling Center

Open Science is defined as “the principle and practice of making research products and processes available to all, while respecting diverse cultures, maintaining security and privacy, and fostering collaborations, reproducibility, and equity” by Federal Agencies. The CCMC has been practicing open science based on FAIR (Findable, Accessible, Interoperable and Reusable) principle by providing access to the state-of -the art space science and space weather models to users around the world through various simulation services such as Runs-on-Request, Instant Runs, Real time runs on iSWA system. The CCMC also provides a wide range of tools and framework to help users easily utilize modeled data. One of the tools is the official NASA open-sourced software called Kamodo. Kamodo allows users to work with complex space weather models and data with little or no coding experience. Additionally, to support transparent model validation efforts, the CCMC is providing an integrated and flexible framework called CAMEL. CAMEL allows users to seamlessly compare model outputs with observational data sets. Currently, we are working on a user-friendly database of the papers and research that used CCMC services, so that the future users will have open access to previously performed research by other users and its details. In this presentation, we will show the open tools and resources provided by the CCMC. Furthermore, we will share our new efforts to support open data and open science results.

Ja Soon Shim↗
NASA NTRSDate not supplied

Open Science for Plants in Space: Data Sharing, Standards, and Informatics for Reuse and Knowledge Discovery

Upcoming deep space missions will rely on plants for crew and ecosystem health. Open access space biology data enables scientists to examine the biological responses of plants to ionizing radiation, altered gravity, low atmospheric pressure, elevated CO2, altered photoperiods and many other abiotic stressors. Open Science is the practice of making research available to all, while respecting diverse cultures, to foster collaborations with equity. NASA has declared 2023 as the ‘Year of Open Science’ and created a 5-year Transform to Open Science (TOPS) initiative designed to rapidly transform the agency toward an inclusive culture of open science. NASA’s Open Science Data Repository (OSDR) within the Biological and Physical Sciences Division provides access to data from space-relevant biological experiments. OSDR combines two databases, GeneLab and Ames Life Sciences Data Archive (ALSDA) to maximize access to standardized ‘omics (e.g., transcriptomics, proteomics) and phenotypic data (e.g., microscopy, biomass), respectively. GeneLab started in 2014 with the creation of the first space-relevant FAIR (Findable, Accessible, Interoperable, Reusable) biological ‘omics repository, providing detailed metadata on investigation, sample, and assay levels. The addition of ALSDA to OSDR expands plant data analysis capabilities across both phenotypic and ‘omics data. Today, OSDR hosts 62+ plant datasets and has enabled 58 peer-reviewed publications. Most of these publications were collaboration efforts under the OSDR Analysis Working Groups (AWGs). AWGs provide great opportunities for investigators to collaborate with community members and set new standards for space-relevant data and metadata. The AWGs welcome any ASGSR members interested in contributing plant expertise for space biology, and to serve as subject matter experts as we establish the framework for modern plant data archiving. Investigators are encouraged to submit their space-relevant plant datasets to OSDR and visit the site to learn about the tools OSDR has to offer (osdr.nasa.gov/bio).

FAIR↗
NASA NTRSDate not supplied

Developing a Vision for Maturing the Heliophysics Infrastructure towards Open Science: The DIARieS Analysis Ecosystem

In the dawn of open science and the upcoming requirements, we speak about the existing state of Heliophysics infrastructure and detail the evolution required to address capability or interconnection shortcomings. Such a daunting barrier calls for an analysis ecosystem with multi-faceted capability. We propose such an ecosystem, called DIARieS, to be built upon five conceptual pillars: Discovery, Implementation, Analysis, Reproducibility, and Sharing of results. The combination of these concepts in a single platform will enable users to more intuitively combine recent advances in technology to create ‘DIARieS’ of their workflows, which can be easily made open to others in the community. The DIARieS ecosystem will also increase our efficiency by streamlining our various workflow processes, including automatic incorporation of the impending requirements of open science. The various components of the ecosystem will simplify software installation and data implementation, including automatically generated citation lists based on the components included. Automatic containerization and version control of the ecosystem will make the custom workflows easily reproducible. Employing widget technology will ease the difficulty of producing publication and commercial quality visualizations and applying common analyses techniques. Incorporating multiple technologies will streamline the various sharing methods common in our work environments today. Overall, the totality of capabilities to be offered by this analysis ecosystem will drastically simplify the application of open science principles to our work in addition to improving our efficiency and ease of collaboration. This talk summarizes a vision of the proposed ecosystem, which is described in more detail in Ringuette et al. (2022: https://doi.org/10.1016/j.asr.2022.05.012).

infrastructure↗