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At least 19 records

Individual Nest Site Preferences Do Not Explain Upslope Population Shifts of a Secondary Cavity-Nesting Species

Geographic ranges of plants and animals are shifting due to environmental change. While some species are shifting towards the poles and upslope in elevation, the processes leading to these patterns are not well known. We analyzed 22 years of western bluebird (Sialia mexicana) data from a large nest box network in northern New Mexico at elevations between 1860 m and 2750 m. This population has shifted to higher elevations over time, but whether this is due to changes in nesting behavior and preference for higher elevation within the population or driven by immigration is unclear. We banded adults and nestlings from nest boxes and examined nesting location and elevation for individual birds captured two or more times. Most recaptured birds nested at the same nest boxes in subsequent years, and the number of birds that moved upslope did not significantly differ from the number that moved downslope. Fledglings moved greater distances and elevations than adults, but these movements were not upslope specific. Female fledglings showed greater changes in elevation and distance compared to male fledglings, but again, movements were not consistently upslope. The upslope shift in this population may be due to birds immigrating into the population and not from changes in individual nesting behavior.

59 BASIC BIOLOGICAL SCIENCES↗

Single reader between-cases AUC estimator with nested data

The area under the receiver operating characteristic curve (AUC) is widely used in evaluating diagnostic performance for many clinical tasks. It is still challenging to evaluate the reading performance of distinguishing between positive and negative regions of interest (ROIs) in the nested-data problem, where multiple ROIs are nested within the cases. To address this issue, we identify two kinds of AUC estimators, within-cases AUC and between-cases AUC. We focus on the between-cases AUC estimator, since our main research interest is in patient-level diagnostic performance rather than location-level performance (the ability to separate ROIs with and without disease within each patient). Another reason is that as the case number increases, the number of between-cases paired ROIs is much larger than the number of within-cases ROIs. We provide estimators for the variance of the between-cases AUC and for the covariance when there are two readers. We derive and prove the above estimators’ theoretical values based on a simulation model and characterize their behavior using Monte Carlo simulation results. We also provide a real-data example. Moreover, we connect the distribution-based simulation model with the simulation model based on the linear mixed-effect model, which helps better understand the sources of variation in the simulated dataset.

Health Care Sciences & Services↗

A nested grid, nonhydrostatic, elastic model using a terrain-following coordinate transformation - The radiative-nesting boundary conditions

This study presents a nested-grid nonhydrostatic and elastic model using a terrain-following coordinate transformation as well as a unique application of grid-nesting techniques to the time-splitting elastic model. A simulation of the 10-m-high Witch of Agnesi Mountain provides the control to test this new model. The results show that the model produces the same solution as that derived from a simple linear analytic model. It is demonstrated that the new nested-grid model improves model resolution without resorting to the costly method of placing a fine-resolution grid over the entire domain. Since the wave reflection from the boundaries of the fine-grid model is well controlled, the boundary of the nested fine-grid model can be located even at the wave-active region. The model can be used to simulate various weather systems in which scale interactions are important.

Chen, Chaing↗

Soil properties and biochemical composition of ground-dwelling bee nests in agricultural settings

Soils deliver underrecognized ecosystem services by supplying habitat for ground-dwelling pollinators, such as wild bees and other organisms, that pollinate 80% of insect-pollinated plants and play a critical role in securing resilient pollination provisions. Our objective is to identify soil properties of ground nesting bee nests in agricultural settings of western Oregon, USA. We confirmed ground nesting bee and sand wasp activity in 7 agricultural sites and 1 recreational park. Soils from 17 bee and sand wasp nests were analyzed for pH, particle size distribution, and carbon and nitrogen content. We visually confirmed that 8 of the nesting bees were sweat bees from the Halictidae family and identified a captured bee specimen as Lasioglossum (Dialictus) (Hymenoptera: Halictidae). We located 2 sites with sand wasps where specimens were identified as Cerceris and Bembix (Hymenoptera: Crabronidae). The organic matter composition of three soil samples scraped from the linings of active nests were assessed using Fourier transform ion cyclotron resonance mass spectrometry (FTICR-MS). The FTICR-MS results identified unknown lipid compounds in the nest soil samples, which we hypothesize are waterproofing lipids secreted to line cell walls. Bee nests occurred in slightly acidic, bare-ground soils with low rock/vegetation coverage, low organic carbon content (<1%), and exhibited significantly higher silt-plus-clay fractions (>75%) versus data published for bee nests in prior work. Our findings present important implications for textural controls on nest site selection in wet, cool environments and demonstrate the importance of integrating soil properties to improve our understanding of ground-dwelling organisms and associated soil habitats.

59 BASIC BIOLOGICAL SCIENCES↗

Variation in Nest Temperatures of the American Alligator Found on the Kennedy Space Center Merritt Island National Wildlife Refuge

Information on nest temperatures of the American Alligator (Alligator mississippiensis) constructed in the wild is limited. Nesting temperatures during a critical thermal sensitive period determine the sex of alligators and are therefore critical in establishing the sex biases in recruitment efforts of alligators within a given community. Nest components, varying environmental conditions, and global warming could have a significant impact on nest temperatures, thus affecting future generations of a given population. One hundred and seventy four programmable thermistors were inserted into fifty eight nests from 2010 through 2015 nesting cycles. Three thermistors were placed inside each nest cavity (one on top of the eggs, one in the middle of the eggs, and one at the bottom of the clutch of the eggs) to collect temperature profiles in the incubation chamber and throughout the entire incubation period. One thermistor was also placed near or above these nests to obtain an ambient air temperature profile. Once retrieved, data from these thermistors were downloaded to examine temperature profiles throughout the incubation period as well as during the period of sexual determination. These data would help establish survival rates related to nest temperature and predict sex ratio of recruited neonates at the Kennedy Space Center. Over three million temperatures have been recorded since 2010 for the alligator thermistor study giving us insight to the recruitment efforts found here. Precipitation was the largest influence on nesting temperatures outside of daily photoperiod, with immediate changes of up to eight degrees Celsius.

Alligator↗

Leaf-cutting ant (Atta cephalotes) nests may be hotspots of methane and carbon dioxide emissions in tropical forests

Leaf-cutting ants of the genus Atta are widely distributed throughout the American tropics and subtropics and rival other herbivores in the consumption of surrounding foliage. Although numerous studies have been conducted on the role these insects play in herbivory and organic matter dynamics, only a handful of studies have examined their impacts on soil greenhouse gas emissions. Our study investigated fluxes of carbon dioxide (CO 2 ) and methane (CH 4 ) from three nests of Atta cephalotes using a portable greenhouse gas analyzer, and measured CO 2 and CH 4 emissions from soils containing nest holes that ranged 5.2–152.1 g CO 2 -C and –1.1 to 15,264.7 mg CH 4 -C m -2 day -1 , respectively. Fluxes of CO 2 and CH 4 were positively correlated above nest holes, but not in patches of soil away from leaf-cutting ant nests. Nearby non-nest soil emissions were significantly lower, ranging from 0.6 to 6.0 g CO 2 -C and –1.3 to 0.77 mg CH 4 -C m -2 day -1 . Fluxes of both gases among nests and among holes within a single nest were highly variable. This preliminary dataset is small in scale both temporarily and geographically, but the discovery of substantial greenhouse gas fluxes from Atta cephalotes nests may have important implications for carbon budgets of tropical and subtropical American forests. Further work will be necessary to determine the mechanisms behind enhanced greenhouse gas emissions from leaf-cutting ant nests, and how this may alter ecosystem-scale CO 2 emissions and CH 4 sink strength in tropical forest soils.

54 ENVIRONMENTAL SCIENCES↗

Spatial and temporal variation in nest temperatures forecasts sex ratio skews in a crocodilian with environmental sex determination

Species displaying temperature-dependent sex determination (TSD) are especially vulnerable to the effects of a rapidly changing global climate due to their profound sensitivity to thermal cues during development. Predicting the consequences of climate change for these species, including skewed offspring sex ratios, depends on understanding how climatic factors interface with features of maternal nesting behaviour to shape the developmental environment. Here, we measure thermal profiles in 86 nests at two geographically distinct sites in the northern and southern regions of the American alligator's ( Alligator mississippiensis ) geographical range, and examine the influence of both climatic factors and maternally driven nest characteristics on nest temperature variation. Changes in daily maximum air temperatures drive annual trends in nest temperatures, while variation in individual nest temperatures is also related to local habitat factors and microclimate characteristics. Without any compensatory nesting behaviours, nest temperatures are projected to increase by 1.6–3.7°C by the year 2100, and these changes are predicted to have dramatic consequences for offspring sex ratios. Exact sex ratio outcomes vary widely depending on site and emission scenario as a function of the unique temperature-by-sex reaction norm exhibited by all crocodilians. By revealing the ecological drivers of nest temperature variation in the American alligator, this study provides important insights into the potential consequences of climate change for crocodilian species, many of which are already threatened by extinction.

Environmental Sciences & Ecology↗

An EVACS simulation with nested transactions

Documented here is the recent effort of the MISSION Kernel Team on an Extra-Vehicular Activity Control System (EVACS) simulation with nested transactions. The team has implemented the EVACS simulation along with a design for nested transactions. The EVACS simulation is a project wide aid to exploring Mission and Safety Critical (MASC) applications and their support software. For this effort it served as a trial scenario for demonstrating nested transactions and exercising the transaction support design. The EVACS simulation is a simulation of some aspects of the Extra-Vehicular Activity Control System, in particular, just the selection of communication frequencies. Its current definition is quite narrow, serving only as a starting point for prototyping purposes. (EVACS itself may be supplanted in a larger scenario of a lunar outpost with astronauts and a lunar rover.) Initially the simulation of frequency selection was written without consideration of nested transactions. This scenario was then modified to embed its processing in nested transactions. To simplify the prototyping effort, only two aspects of the general design for transaction support have been implemented: the basic architecture and state recovery. The simulation has been implemented in the programming language Smalltalk. It consists of three components: (1) a simulation support code which provides the framework for initiating, interacting and tracing the system; (2) the EVACS application code itself, including its calls upon nested transaction support; and (3) a transaction support code which implements the logic necessary for nested transactions. Each of these components deserves further description, but for now only the transaction support is discussed.

Auty, David↗

An object-oriented approach to nested data parallelism

This paper describes an implementation technique for integrating nested data parallelism into an object-oriented language. Data-parallel programming employs sets of data called 'collections' and expresses parallelism as operations performed over the elements of a collection. When the elements of a collection are also collections, then there is the possibility for 'nested data parallelism.' Few current programming languages support nested data parallelism however. In an object-oriented framework, a collection is a single object. Its type defines the parallel operations that may be applied to it. Our goal is to design and build an object-oriented data-parallel programming environment supporting nested data parallelism. Our initial approach is built upon three fundamental additions to C++. We add new parallel base types by implementing them as classes, and add a new parallel collection type called a 'vector' that is implemented as a template. Only one new language feature is introduced: the 'foreach' construct, which is the basis for exploiting elementwise parallelism over collections. The strength of the method lies in the compilation strategy, which translates nested data-parallel C++ into ordinary C++. Extracting the potential parallelism in nested 'foreach' constructs is called 'flattening' nested parallelism. We show how to flatten 'foreach' constructs using a simple program transformation. Our prototype system produces vector code which has been successfully run on workstations, a CM-2, and a CM-5.

Sheffler, Thomas J.↗

Effects of Nesting on Compression-Loaded 2-D Woven Textile Composites

Layer nesting was investigated in five harness satin weave textile composite laminates under static compression loading. Two carbon/epoxy material systems, AS4/3501-6 and IM7/8551-7A were considered. Laminates were fabricated with three idealized nesting cases: stacked, split-span and diagonal. Similar compression strength reductions due to the effects of idealized nesting were identified for each material. The diagonal nesting geometry produced the largest reduction in static strength when compared to the compression strength of a conventional textile composite. All three nesting cases produced reductions in strength and ultimate strain due to the effects of idealized nesting. Finite element results showed consistent strength reduction trends for the idealized nesting cases, however the magnitudes of compressive strengths were overpredicted.

Adams, Daniel OHare↗

Convection Parametrization and Multi-Nesting Dependence of a Heavy Rainfall Event over Namibia with Weather Research and Forecasting (WRF) Model

Namibia is considered as one of the countries that are most vulnerable to climate change due to its generally dry climate and the percentage of its population that rely on subsistence agriculture for their livelihoods. Early warning systems are an important aspect of adapting to climate change. Weather forecasting relies on the use of numerical weather prediction models and these need to be configured properly. In this study we investigate the effects of using multi-nests and a convection scheme on the simulation of a heavy rainfall event over the Northwestern region of Kunene, Namibia. The event which was associated with a cut-off low system, was short-lived and resulted in over 45 mm of rainfall in one hour. For the multi-nest, a 9 km grid length parent domain is nested within the Global Forecast System (GFS) simulations, which in turn forces a 3 km grid spacing child domain. A different set of simulations are produced using a single nest of 3 km grid spacing, nested directly inside the GFS data. The simulations are produced with the convection scheme switched on and off. The impact of a single versus multi nest is found to be small in general, with slight differences in the location of high rainfall intensity. Switching off the convection schemes results in high rainfall intensity and increased detail in the simulations, including when a grid spacing of 9 km mis used. Using a grid spacing of 3 km with the convection scheme on, results in a loss of detail in the simulations as well as lower rainfall amounts. The study shows a need for different configurations to be tested before an optimum configuration can be selected for operational forecasting. We recommend further tests with different synoptic forcing to be conducted to identify a suitable configuration for Namibia.

flooding↗

Hanford Site Raptor Nest Monitoring Report for Calendar Years 2024 and 2025

The focus of this report is to document the distribution and abundance of nesting raptors on the HFO-managed portion of the Hanford Site. Raptor nest surveys provide land managers with specific locations of nest sites so that the nests can be avoided and disturbances minimized during the nesting season. Long-term trends in nesting raptor populations also allow for the assessment of potential impacts from Hanford Site operations.

63 RADIATION, THERMAL, AND OTHER ENVIRON. POLLUTAN↗

Hanford Site Bee Nest Box Monitoring Report for Calendar Year 2021

This report summarizes the results of the third year of monitoring bee nest boxes on the Hanford Site. Twenty bee nest boxes were installed as a component of compensatory mitigation for the installation of the L-894 water line between the 200-East and 200-West Areas of the Hanford Site in July 2019. The goal of this compensatory mitigation is to replace lost nesting habitat for above-ground nesting bees in a mature sagebrush ecosystem. Annual monitoring will track the condition and occupation of the bee nest boxes to determine if the compensatory mitigation was successful and to identify best practices when replacing nesting habitat for native bees.

54 ENVIRONMENTAL SCIENCES↗

Hanford Site Bee Nest Box Monitoring Report for Calendar Year 2020

This report summarizes the results of the second year of monitoring bee nest boxes on the Hanford Site. Twenty bee nest boxes were installed as a component of compensatory mitigation for the installation of the L-894 water line between the 200-East and 200-West Areas of the Hanford Site in July 2019. The goal of this compensatory mitigation is to replace lost nesting habitat for above-ground nesting bees in a mature sagebrush ecosystem. Annual monitoring will track the condition and occupation of the bee nest boxes to determine if the compensatory mitigation was successful and to identify best practices when replacing nesting habitat for native bees.

54 ENVIRONMENTAL SCIENCES↗

Hanford Site Bee Nest Box Monitoring Report for Calendar Year 2019

This report summarizes the results of the first year of monitoring bee nest boxes on the Hanford Site. Twenty bee nest boxes were installed as a component of compensatory mitigation for the installation of the L-894 water line between the 200-East and 200-West Areas of the Hanford Site. The goal of this compensatory mitigation is to replace lost nesting habitat for above-ground nesting bees in a mature sagebrush ecosystem. Annual monitoring will track the condition and occupation of the bee nest boxes to determine if the compensatory mitigation was successful and to identify best practices when replacing nesting habitat for native bees.

54 ENVIRONMENTAL SCIENCES↗

Block-structured, equal-workload, multi-grid-nesting interface for the Boussinesq wave model FUNWAVE-TVD (Total Variation Diminishing)

Abstract. We describe the development of a block-structured, equal-CPU-load (central processing unit), multi-grid-nesting interface for the Boussinesq wave model FUNWAVE-TVD (Fully Nonlinear Boussinesq Wave Model with Total Variation Diminishing Solver). The new model framework does not interfere with the core solver, and thus the core program, FUNWAVE-TVD, is still a standalone model used for a single grid. The nesting interface manages the time sequencing and two-way nesting processes between the parent grid and child grid with grid refinement in a hierarchical manner. Workload balance in the MPI-based (message passing interface) parallelization is handled by an equal-load scheme. A strategy of shared array allocation is applied for data management that allows for a large number of nested grids without creating additional memory allocations. Four model tests are conducted to verify the nesting algorithm with assessments of model accuracy and the robustness in the application in modeling transoceanic tsunamis and coastal effects.

Choi, Young-Kwang↗