Results for “multi-population”

DOE OSTI2023

Stability of multi-population traffic flows

Traffic waves, known also as stop-and-go waves or phantom jams, appear naturally as traffic instabilities, also in confined environments as a ring-road. A multi-population traffic is studied on a ring-road, comprised of drivers with stable and unstable behavior. There exists a critical penetration rate of stable vehicles above which the system is stable, and under which the system is unstable. In the latter case, stop-and-go waves appear, provided enough cars are on the road. The critical penetration rate is explicitly computable, and, in reasonable situations, a small minority of aggressive drivers is enough to destabilize an otherwise very stable flow. This is a source of instability that a single population model would not be able to explain. Also, the multi-population system can be stable below the critical penetration rate if the number of cars is sufficiently small. Instability emerges as the number of cars increases, even if the traffic density remains the same (i.e., number of cars and road size increase similarly). This shows that small experiments could lead to deducing imprecise stability conditions.

97 MATHEMATICS AND COMPUTING↗

DOE OSTI2025

Inferring demographic and selective histories from population genomic data using a 2-step approach in species with coding-sparse genomes: an application to human data

Abstract The demographic history of a population, and the distribution of fitness effects (DFE) of newly arising mutations in functional genomic regions, are fundamental factors dictating both genetic variation and evolutionary trajectories. Although both demographic and DFE inference has been performed extensively in humans, these approaches have generally either been limited to simple demographic models involving a single population, or, where a complex population history has been inferred, without accounting for the potentially confounding effects of selection at linked sites. Taking advantage of the coding-sparse nature of the genome, we propose a 2-step approach in which coalescent simulations are first used to infer a complex multi-population demographic model, utilizing large non-functional regions that are likely free from the effects of background selection. We then use forward-in-time simulations to perform DFE inference in functional regions, conditional on the complex demography inferred and utilizing expected background selection effects in the estimation procedure. Throughout, recombination and mutation rate maps were used to account for the underlying empirical rate heterogeneity across the human genome. Importantly, within this framework it is possible to utilize and fit multiple aspects of the data, and this inference scheme represents a generalized approach for such large-scale inference in species with coding-sparse genomes.

Soni, Vivak (ORCID:0000000294969562)↗