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At least 19 records

Doppler Lidar Motion-Correction (DLMC) Value-Added Product Report

The U.S. Department of Energy Atmospheric Radiation Measurement (ARM) second ARM Mobile Facility (AMF2) Doppler lidar (S/N 0319-160) was deployed on the German ice breaker Polarstern during the Multidisciplinary Drifting Observatory for the Study of Arctic Climate (MOSAiC) campaign during 2019-2020 (see Figure 1). This was the first deployment of the new AMF2 Doppler lidar, as well as the first ship-based deployment of a Doppler lidar (DL) by ARM. In contrast to land-based deployments, the lidar’s heading (a.k.a. home point) and tilt are constantly changing, and lidar’s radial velocity measurements are impacted by the ship’s motion. Since the beam directions are reported relative to the instrument’s frame of reference, derivation of higher-order data products such as wind speed and direction require that the lidar’s attitude and translational velocity be properly accounted for. The Doppler Lidar Motion-Correction (DLMC) Value-Added-Product (VAP) was developed specifically for ship-based deployments of the Doppler lidar. This VAP combines raw uncorrected data from the DL and simultaneous measurements from the ARM Navigation system (NAV) (Walton 2019) to transform the beam angles from the lidar coordinate system to an Earth-fixed coordinate system. The VAP also removes the contribution of the lidar’s platform velocity from the radial velocity measurements. This report documents the methods used by the DLMC to perform these corrections.

54 ENVIRONMENTAL SCIENCES↗

Doppler Lidar Motion-Correction Wind Profiles (DLMCPROF-WIND) Value-Added Product Report

Wind speed and direction, together with pressure, temperature, and relative humidity, are the most fundamental atmospheric state parameters. Accurate measurement of these parameters is crucial for numerical weather prediction. Vertically resolved wind measurements in the atmospheric boundary layer are particularly important for modeling pollutant and aerosol transport. The U.S. Department of Energy (DOE) Atmospheric Radiation Measurement (ARM) user facility currently operates several scanning coherent Doppler lidar (DL) systems that provide accurate height-resolved measurements of wind speed and direction. These instruments operate in the near infrared (IR;1.5 microns) and provide range-resolved measurements of radial velocity, attenuated aerosol backscatter, and signal-to-noise ratio (SNR). The systems are operated using a fixed scan schedule consisting of plan position indicator (PPI) or Doppler Beam-Swing (DBS) scans. PPI scans are performed by scanning the beam in azimuth while maintaining a fixed elevation angle, and DBS scans are similar but typically also include a vertical beam. Radial velocity data from these scans are processed to yield profiles of wind speed direction. For stationary ground-based deployments, the Doppler Lidar Horizontal Wind Profiles (DLPROF-WIND) Value-Added-Product (VAP) provides height- and time-resolved measurements of the winds (Newsom and Krishnamurthy 2022). For operation on a moving platform, modifications to the existing DLPROF-WIND VAP are required to compensate for the effects of the platform motion. This report describes a parallel VAP, DLMCPROF-WIND, that was developed for computing motion-compensated wind profiles from ARM Doppler lidar data acquired during the Multidisciplinary drifting Observatory for the Study of Arctic Climate (MOSAiC) campaign, when the lidar was deployed on the German icebreaker Polarstern.

54 ENVIRONMENTAL SCIENCES↗

Improved quasiparticle self-consistent electronic band structure and excitons in β – LiGaO 2

The band structure of β–LiGaO 2 is calculated using the quasiparticle self-consistent QSGWˆ method where the screened Coulomb interaction Wˆ is evaluated including electron-hole interaction ladder diagrams and G is the one-electron Green's function. Improved convergence compared to previous calculations leads to a significantly larger band gap of about 7.0 eV. However, exciton binding energies are found to be large and lead to an exciton gap of about 6.0 eV if also a zero-point-motion correction of about –0.4 eV is included. Furthermore, these results are in excellent agreement with recent experimental results on the onset of absorption. Besides the excitons observed thus far, the calculations indicate the existence of a Rydberg-like series of exciton excited states, which is however modified from the classical Wannier exciton model by the anisotropies of the material and the more complex mixing of Bloch states in the excitons resulting from the Bethe-Salpeter equation. The exciton fine structure and the exciton wave functions are visualized and analyzed in various ways.

36 MATERIALS SCIENCE↗

Tidal Energy Resource Characterization, Velocity and Turbulence Measurements, Processed Data, Cook Inlet, AK, 2021

This submission contains processed datasets from a long-term deployment of 3 moorings and a transect survey of the proposed tidal energy site off the East Forelands in Cook Inlet, AK. The long-term mooring datasets were created from 8 instruments mounted on a Terrasond High Energy Oceanographic Mooring (THEOM) bottom lander and two Mid-Water Mooring (MWM) Stablemoor buoys from 1 July 2021 to 31 August 2021 (60 days). The west-most mooring (MWM1) was deployed at 60.720225 N, 151.436196 W in ~50 m of water. The middle mooring (THEOM) was deployed at 60.720703 N, 151.429500 W in ~52 m of water. The east-most buoy (MWM2) was deployed at 60.720081 N, 151.420896 W in ~50 m of water. Each Stablemoor carried three instruments: 1. A Nortek Vector acoustic Doppler velocimeter (ADV) mounted at the Stablemoor's nose. Data were recorded at 8 Hz on a 5 minute duty cycle every 20 minutes. Data was motion-corrected using the internal IMU and external ADCP bottom-track data and then bin-averaged into 4 minute bins and converted to the Principal (streamwise, cross-stream, vertical) coordinate system. (Note: 30 seconds were trimmed from the beginning and end of each 5 minute duty cycle to account for the filter end-effects from turning on and turning off the IMU.) 2. A down-looking Nortek Signature 1000 kHz acoustic Doppler current profiler (ADCP) mounted in the first Stablemoor instrument well. Data were recorded in 2 Hz with 5-beam burst and bottom-track enabled. Processed data has been averaged into 10 minute bins and converted into the Principal coordinate system. 3. An up-looking Nortek Signature 1000 kHz acoustic Doppler current profiler (ADCP) mounted in the second Stablemoor instrument well. Data were recorded at 4 Hz with 5 beam burst enabled. Processed data has been averaged into 10 minute bins and converted into the Principal coordinate system. Note: the down-facing ADCP on MWM1 failed on July 10th, 2021, only recording 9 days of data. Because ADV motion-correction required bottom track, the ADV from MWM1 also only has 9 days processed. Additionally, only 25 days of data were processed from the MWM2 ADV because it appeared to have been impacted by debris on 7/25. Two instruments were mounted on the THEOM (see MHKDR link further below for THEOM raw data): 4. A Nortek Vector acoustic Doppler velocimeter (ADV). Data were recorded at 8 Hz on a 5 minute duty cycle every 20 minutes. Data was bin-averaged into 5 minute bins, and converted to the Principal coordinate system. 5. A Nortek Signature 500 kHz acoustic Doppler current profiler (ADCP). Data were recorded in 4 Hz in the beam coordinate system from all 5 beams. Processed data has been averaged into 10 minutes bins and converted to the Principal coordinate system.

16 TIDAL AND WAVE POWER↗

Adaptive optical correction for in vivo two-photon fluorescence microscopy with neural fields

Adaptive optics restore ideal imaging performance in complex samples by measuring and correcting optical aberrations but often require custom-built microscopes with carefully aligned wavefront sensing/shaping devices and can be susceptible to sample motion. Here we describe NeAT, a computational framework using neural fields for adaptive optics two-photon fluorescence microscopy. NeAT estimates wavefront aberration and recovers sample structure from a 3D image stack without requiring external datasets for training. Incorporating motion correction in learning and correcting conjugation errors commonly found in commercial microscopes, NeAT is designed for deployment in biological laboratories for in vivo imaging. We validate NeAT’s performance using a custom-built microscope with a wavefront sensor under varying signal-to-noise ratios, aberration and motion conditions. With a commercial microscope, we demonstrate real-time aberration correction for in vivo morphological and functional imaging in the living mouse brain, with NeAT improving the signal and accuracy of glutamate and calcium imaging of synapses and neurons.

Kang, Iksung↗

INR-TEM: Robust cavity detection in multifocus TEM images via implicit neural representations

When characterizing materials using transmission electron microscopy (TEM) images, detecting and quantifying small features in microstructures, such as cavities, pose significant challenges. Off-the-shelf object detection models, including YOLOv8, show considerable performance degradation, particularly when images vary in resolution and the objects of interest possess a low percentage of the total image region of interest. In this study, we introduce a novel detection pipeline that incorporates an implicit neural representation (INR)-based detection method, INR-TEM, and two-modality imaging (e.g., under-focused and over-focused images typically acquired during materials characterization) to improve object detection performance. The INR-TEM method incorporates a pixel-wise prediction principle inspired by pixel-wise centerness weighting. INR-TEM demonstrates superior robustness to resolution variability, maintaining high detection accuracy even at low image resolutions compared to YOLOv8. To leverage INR-TEM effectively in real-world two-modality characterization applications, we further integrate a two-stage motion correction pipeline designed explicitly for aligning multifocus TEM images. The alignment process, comprising keypoint (based on scale-invariant feature transform, SIFT) and intensity matching, significantly mitigates the adverse effects of perceived motion-induced image degradation during through-focal TEM imaging, directly enhancing INR-TEM’s detection capability over conventional single-focus images. Our integrated INR-TEM cavity detection framework notably improves performance across various cavity sizes, outperforming off-the-shelf YOLOv8 detections that rely on a single image modality.

73 NUCLEAR PHYSICS AND RADIATION PHYSICS↗

Accounting for electron-beam-induced warping of molecular nanocrystals in MicroED structure determination

High-energy electrons induce sample damage and motion at the nanoscale to fundamentally limit the determination of molecular structures by electron diffraction. Using a fast event-based electron counting (EBEC) detector, we characterize beam-induced, dynamic, molecular crystal lattice reorientations (BIRs). These changes are sufficiently large to bring reciprocal lattice points entirely in or out of intersection with the sphere of reflection, occur as early events in the decay of diffracted signal due to radiolytic damage, and coincide with beam-induced migrations of crystal bend contours within the same fluence regime and at the same illuminated location on a crystal. These effects are observed in crystals of biotin, a series of amino acid metal chelates, and a six-residue peptide, suggesting that incident electrons inevitably warp molecular lattices. The precise orientation changes experienced by a given microcrystal are unpredictable but are measurable by indexing individual diffraction patterns during beam-induced decay. Reorientations can often tilt a crystal lattice several degrees away from its initial position before irradiation, and for an especially beam-sensitive Zn(II)-methionine chelate, are associated with dramatic crystal quakes prior to 1 e − Å −2 electron beam fluence accumulates. Since BIR coincides with the early stages of beam-induced damage, it echoes the beam-induced motion observed in single-particle cryoEM. As with motion correction for cryoEM imaging experiments, accounting for BIR-induced errors during data processing could improve the accuracy of MicroED data.

Vlahakis, Niko (ORCID:0000000250920265)↗

Anomalous Behavior of Newtonian Hydrodynamics Coupled with Radiation Transport

This study shows that Newtonian hydrodynamics coupled with radiation transport, using a wide range of methods for treating the material-motion corrections, results in anomalous behavior. In particular, the flow of infinite-medium equilibration will accelerate whenever viewed moving past an observer in the laboratory frame. The acceleration may cause the velocity to increase exponentially in time. An exact fully-relativistic solution is derived to show that there is no acceleration, independent of the reference frame. This solution is analytic and may be used as a validation problem for the simulation of fully-relativistic radiation hydrodynamics.

73 NUCLEAR PHYSICS AND RADIATION PHYSICS↗

10min Lidar Winds/ Derived Data

This dataset contains 10-min averaged, motion-corrected wind profiles from the WindCube lidar during the deployment of the DOE WindSentinel buoy near Oahu, Hawaii. The attached Lidar Buoy Data Dictionary provides further details on the various instruments on the buoy, parameters measured by each instrument, and the frequency of data collection.

17 WIND ENERGY↗

1Hz Lidar Winds / Reviewed Data

This dataset contains 1Hz, motion-corrected wind profiles from the WindCube lidar during the deployment of the DOE WindSentinel buoy near Oahu, Hawaii. The attached Lidar Buoy Data Dictionary provides further details on the various instruments on the buoy, parameters measured by each instrument, and the frequency of data collection.

17 WIND ENERGY↗

On the meaning of Berry force for unrestricted systems treated with mean-field electronic structure

We show that the Berry force as computed by an approximate, mean-field electronic structure can be meaningful if properly interpreted. In particular, for a model Hamiltonian representing a molecular system with an even number of electrons interacting via a two-body (Hubbard) interaction and a spin–orbit coupling, we show that a meaningful nonzero Berry force emerges whenever there is spin unrestriction—even though the Hamiltonian is real-valued and formally the on-diagonal single-surface Berry force must be zero. Moreover, if properly applied, this mean-field Berry force yields roughly the correct asymptotic motion for scattering through an avoided crossing. That being said, within the context of a ground-state calculation, several nuances do arise as far interpreting the Berry force correctly, and as a practical matter, the Berry force diverges near the Coulson–Fischer point (which can lead to numerical instabilities). Here, we do not address magnetic fields here.

37 INORGANIC, ORGANIC, PHYSICAL, AND ANALYTICAL CH↗

dlmcfpt.c1

The DLMC VAP uses inertial data from the ARM NAV system to transform the Doppler lidar beam angles (az and el) from the lidar's frame of reference to an Earth-fixed frame such the azimuth angle is measured clockwise from true north and the elevation angle is measured from the local horizon. Additionally, the VAP compensates the observed radial (air) velocity data for the effects of the platform velocity (i.e. corrected_radial_velocity = observed_radial_velocity-platform_radial_velocity). The VAP was developed specifically for MOSAiC. The dlmcfpt.c1 product contains the fixed point, or staring data. The dlmcusr.c1 product contains a user defined scan which is anything the operator wants it to be.

54 ENVIRONMENTAL SCIENCES↗

dlmcusr.c1

The DLMC VAP uses inertial data from the ARM NAV system to transform the Doppler lidar beam angles (az and el) from the lidar's frame of reference to an Earth-fixed frame such the azimuth angle is measured clockwise from true north and the elevation angle is measured from the local horizon. Additionally, the VAP compensates the observed radial (air) velocity data for the effects of the platform velocity (i.e. corrected_radial_velocity = observed_radial_velocity-platform_radial_velocity). The VAP was developed specifically for MOSAiC. The dlmcfpt.c1 product contains the fixed point, or staring data. The dlmcusr.c1 product contains a user defined scan which is anything the operator wants it to be.

54 ENVIRONMENTAL SCIENCES↗

Monte Carlo Simulation and Reconstruction: Assessment of Myocardial Perfusion Imaging of Tracer Dynamics With Cardiac Motion Due to Deformation and Respiration Using Gamma Camera With Continuous Acquisition

Purpose: Myocardial perfusion imaging (MPI) with single photon emission computed tomography (SPECT) is routinely used for stress testing in nuclear medicine. Recently, our group extended its potential going from 3D visual qualitative image analysis to 4D spatiotemporal reconstruction of dynamically acquired data to capture the time variation of the radiotracer concentration and the estimated myocardial blood flow (MBF) and coronary flow reserve (CFR). However, the quality of reconstructed image is compromised due to cardiac deformation and respiration. The work presented here develops an algorithm that reconstructs the dynamic sequence of separate respiratory and cardiac phases and evaluates the algorithm with data simulated with a Monte Carlo simulation for the continuous image acquisition and processing with a slowly rotating SPECT camera. Methods: A clinically realistic Monte Carlo (MC) simulation is developed using the 4D Extended Cardiac Torso (XCAT) digital phantom with respiratory and cardiac motion to model continuous data acquisition of dynamic cardiac SPECT with slowly rotating gamma cameras by incorporating deformation and displacement of the myocardium due to cardiac and respiratory motion. We extended our previously developed 4D maximum-likelihood expectation-maximization (MLEM) reconstruction algorithm for a data set binned from a continuous list mode (LM) simulation with cardiac and respiratory information. Our spatiotemporal image reconstruction uses splines to explicitly model the temporal change of the tracer for each cardiac and respiratory gate that delineates the myocardial spatial position as the tracer washes in and out. Unlike in a fully list-mode data acquisition and reconstruction the accumulated photons are binned over a specific but very short time interval corresponding to each cardiac and respiratory gate. Reconstruction results are presented showing the dynamics of the tracer in the myocardium as it continuously deforms. These results are then compared with the conventional 4D spatiotemporal reconstruction method that models only the temporal changes of the tracer activity. Mean Stabilized Activity (MSA), signal to noise ratio (SNR) and Bias for the myocardium activities for three different target-to-background ratios (TBRs) are evaluated. Dynamic quantitative indices such as wash-in (K1) and wash-out (k2) rates at each gate were also estimated. Results: The MSA and SNR are higher with higher TBRs while biases were improved with higher TBRs to less than 10%. The correlation between exhalation-inhalation sequence with the ground truth during respiratory cycle was excellent. Our reconstruction method showed better resolved myocardial walls during diastole to systole as compared to the ungated 4D image. Estimated values of K1 and k2 were also consistent with the ground truth. Conclusion: The continuous image acquisition for dynamic scan using conventional two-head gamma cameras can provide valuable information for MPI. Our study demonstrated the viability of using a continuous image acquisition method on a widely used clinical two-head SPECT system. Our reconstruction method showed better resolved myocardial walls during diastole to systole as compared to the ungated 4D image. Precise implementation of reconstruction algorithms, better segmentation techniques by generating images of different tissue types and background activity would improve the feasibility of the method in real clinical environment.

60 APPLIED LIFE SCIENCES↗

A simple improved low temperature correction for the hierarchical equations of motion

The study of open system quantum dynamics has been transformed by the hierarchical equations of motion (HEOM) method, which gives the exact dynamics for a system coupled to a harmonic bath at arbitrary temperature and system–bath coupling strength. However, in its standard form, this method is only consistent with the weak-coupling quantum master equation at all temperatures when many auxiliary density operators are included in the hierarchy, even when low temperature corrections are included. Here, we propose a new low temperature correction scheme for the termination of the hierarchy based on Zwanzig projection, which alleviates this problem and restores consistency with the weak-coupling master equation with a minimal hierarchy. The utility of the new correction scheme is demonstrated on a range of model systems, including the Fenna–Matthews–Olson complex. The new closure is found to improve convergence of the HEOM even beyond the weak-coupling limit and is very straightforward to implement in existing HEOM codes.

Fay, Thomas P. (ORCID:000000030625731X)↗

WFIP3 - SHIP site - NREL Profiling Lidar (Windcube v2.1) / Reviewed data

This dataset contains reviewed data from the profiling lidar (Windcube v2.1) deployed on WFIP3's SHIP. The reviewed files herein are based on the lidar's RTD files (i.e., the real-time raw data files at near 1 Hz resolution). The data have been corrected for the motion of the ship.

17 WIND ENERGY↗

WFIP3 - BARG site - NREL Scanning Lidar (Halo XR+ #235) / Raw Data

These data include raw scanning Doppler lidar measurements from the deployment of the NREL Halo XR+ (s/n 235) at WFIP3's BARG. The raw measurements include uncalibrated beam azimuth angles, radial velocity, backscatter, signal to noise ratio per each line of sight, and range-gate. Note: the measurements have NOT been corrected for the motion of the barge.

17 WIND ENERGY↗