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At least 19 records

Using partially labeled data for normal mixture identification with application to class definition

The problem of estimating the parameters of a normal mixture density when, in addition to the unlabeled samples, sets of partially labeled samples are available is addressed. The density of the multidimensional feature space is modeled with a normal mixture. It is assumed that the set of components of the mixture can be partitioned into several classes and that training samples are available from each class. Since for any training sample the class of origin is known but the exact component of origin within the corresponding class is unknown, the training samples as considered to be partially labeled. The EM iterative equations are derived for estimating the parameters of the normal mixture in the presence of partially labeled samples. These equations can be used to combine the supervised and nonsupervised learning processes.

Shahshahani, Behzad M.

The Fifth Calibration/Data Product Validation Panel Meeting

The minutes and associated documents prepared from presentations and meetings at the Fifth Calibration/Data Product Validation Panel meeting in Boulder, Colorado, April 8 - 10, 1992, are presented. Key issues include (1) statistical characterization of data sets: finding statistics that characterize key attributes of the data sets, and defining ways to characterize the comparisons among data sets; (2) selection of specific intercomparison exercises: selecting characteristic spatial and temporal regions for intercomparisons, and impact of validation exercises on the logistics of current and planned field campaigns and model runs; and (3) preparation of data sets for intercomparisons: characterization of assumptions, transportable data formats, labeling data files, content of data sets, and data storage and distribution (EOSDIS interface).

Source record

Cell Kinetic and Histomorphometric Analysis of Microgravitational Osteopenia: PARE.03B

Previous methods of identifying cells undergoing DNA synthesis (S-phase) utilized H-3 thymidine (3HT) autoradiography. 5-Bromo-2'-deoxyuridine (BrdU) immunohistochemistry is a nonradioactive alternative method. This experiment compared the two methods using the nuclear volume model for osteoblast histogenesis in two different embedding media. Twenty Sprague-Dawley rats were used, with half receiving 3HT (1 micro Ci/g) and the other half BrdU (50 microgram/g). Condyies were embedded (one side in paraffin, the other in plastic) and S-phase nuclei were identified using either autoradiography or immunohistochemistry. The fractional distribution of preosteoblast cell types and the percentage of labeled cells (within each cell fraction and label index) were calculated and expressed as mean q standard error. Chi-Square analysis showed only a minor difference in the fractional distribution of cell types. However, there were significant differences (p less than 0.05) by ANOVA, in the nuclear labeling of specific cell types. With the exception of the less-differentiated A+A'cells, more BrdU label was consistently detected in paraffin than in plastic-embedded sections. In general, more nuclei were labeled with 3H-thymidine than with BrdU in both types of embedding media. Labeling index data (labeled cells/total cells sampled x 100) indicated that BrdU in paraffin, but not plastic gave the same results as 3HT in either embedding method. Thus, we conclude that the two labeling methods do not yield the same results for the nuclear volume model and that embedding media is an important factor whenusing BrdU. As a result of this work, 3HT was chosen for used in the PARE.03 flight experiments.

Roberts, W. Eugene

Cell Kinetic and Histomorphometric Analysis of Microgravitational Osteopenia: PARE.03B

Previous methods of identifying cells undergoing DNA synthesis (S-phase) utilized 3H-thymidine (3HT) autoradiography. 5-Bromo-2'-deoxyuridine (BrdU) immunohistochemistry is a nonradioactive alternative method. This experiment compared the two methods using the nuclear volume model for osteoblast histogenesis in two different embedding media. Twenty Sprague-Dawley rats were used, with half receiving 3HT (1 micro-Ci/g) and the other half BrdU (50 micro-g/g). Condyles were embedded (one side in paraffin, the other in plastic) and S-phase nuclei were identified using either autoradiography or immunohistochemistry. The fractional distribution of preosteoblast cell types and the percentage of labeled cells (within each cell fraction and label index) were calculated and expressed as mean +/- standard error. Chi-Square analysis showed only a minor difference in the fractional distribution of cell types. However, there were,significant differences (p less than 0.05) by ANOVA, in the nuclear labeling of specific cell types. With the exception of the less-differentiated A+A' cells, more BrdU label was consistently detected in paraffin than in plastic-embedded sections. In general, more nuclei were labeled with 3H-thymidine than with BrdU in both types of embedding media (Fig 2.). Labeling index data (labeled cells/total cells sampled x 100) indicated that BrdU in paraffin, but not plastic gave the same results as 3HT in either embedding method. Thus, we conclude that the two labeling methods do not yield the same results.

Roberts, W. Eugene

Relating Downlink Data Products to Uplink Commands

An improved data-labeling system provides for automatic association of data products of an exploratory robot (downlink information) with previously transmitted commands (uplink information) that caused the robot to gather the data. Such association is essential to correct and timely analysis of the data products -- including, for example, association of the data with the correct targets. The system was developed for use on Mars Rover missions during the next few years. The system could also be adapted to terrestrial exploratory telerobots for which delays between commands and data returns are long enough to give rise to questions as to which commands resulted in which data returns. The main advantage of this system over prior data-labeling systems is that given a downlink data product, the uplink command and sequence hierarchy that produced it are automatically provided, and given an uplink sequence and command, the downlink data products that it produced are automatically provided.

Backes, Paul

Java Library for Input and Output of Image Data and Metadata

A Java-language library supports input and output (I/O) of image data and metadata (label data) in the format of the Video Image Communication and Retrieval (VICAR) image-processing software and in several similar formats, including a subset of the Planetary Data System (PDS) image file format. The library does the following: It provides low-level, direct access layer, enabling an application subprogram to read and write specific image files, lines, or pixels, and manipulate metadata directly. Two coding/decoding subprograms ("codecs" for short) based on the Java Advanced Imaging (JAI) software provide access to VICAR and PDS images in a file-format-independent manner. The VICAR and PDS codecs enable any program that conforms to the specification of the JAI codec to use VICAR or PDS images automatically, without specific knowledge of the VICAR or PDS format. The library also includes Image I/O plugin subprograms for VICAR and PDS formats. Application programs that conform to the Image I/O specification of Java version 1.4 can utilize any image format for which such a plug-in subprogram exists, without specific knowledge of the format itself. Like the aforementioned codecs, the VICAR and PDS Image I/O plug-in subprograms support reading and writing of metadata.

Deen, Robert

Development of biological and nonbiological explanations for the Viking label release data

The plausibility that hydrogen peroxide, widely distributed within the Mars surface material, was responsible for the evocative response obtained by the Viking Labeled Release (LR) experiment on Mars was investigated. Although a mixture of gamma Fe2O3 and silica sand stimulated the LR nutrient reaction with hydrogen peroxide and reduced the rate of hydrogen decomposition under various storage conditions, the Mars analog soil prepared by the Viking Inorganic Analysis Team to match the Mars analytical data does not cause such effects. Nor is adequate resistance to UV irradiation shown. On the basis of the results and consideration presented while the hydrogen peroxide theory remains the most, if not only, attractive chemical explanation of the LR data, it remains unconvincing on critical points. Until problems concerning the formation and stabilization of hydrogen peroxide on the surface of Mars can be overcome, adhere to the scientific evidence requires serious consideration of the biological theory.

Source record

Learning instrument invariant characteristics for generating high-resolution global coral reef maps

Coral reefs are one of the most biologically complex and diverse ecosystems within the shallow marine environment. Unfortunately, these underwater ecosystems are threatened by a number of anthropogenic challenges, including ocean acidification and warming, overfishing, and the continued increase of marine debris in oceans. This requires a comprehensive assessment of the world's coastal environments, including a quantitative analysis on the health and extent of coral reefs and other associated marine species, as a vital Earth Science measurement. However, limitations in observational and technological capabilities inhibit global sustained imaging of the marine environment. Harmonizing multimodal data sets acquired using different remote sensing instruments presents additional challenges, thereby limiting the availability of good quality labeled data for analysis. In this work, we develop a deep learning model for extracting domain invariant features from multimodal remote sensing imagery and creating high-resolution global maps of coral reefs by combining various sources of imagery and limited hand-labeled data available for certain regions. This framework allows us to generate, for the first time, coral reef segmentation maps at 2-meter resolution, which is a significant improvement over the kilometer-scale state-of-the-art maps. Additionally, this framework doubles accuracy and IoU metrics over baselines that do not account for domain invariance.

Domain Adaptation

Anomaly Detection in Flight Operational Data Using Deep Learning

In this session, we demonstrate two recently developed deep learning models for anomaly detection in flight operational data by the Data Sciences Group at NASA Ames Research Center. The first model is Convolutional Variational Auto-Encoder (CVAE) [1], which is an unsupervised deep encoder-decoder model, designed specifically for finding anomalies in heterogeneous multivariate time series data. We will demonstrate its application to finding anomalies in streaming data from NASA’s Digital Information Platform’s Fuser source. CVAE identifies data instances that are not representative of expected nominal behavior as anomalous. Since it is an unsupervised approach, the flagged anomalies will need to be reviewed by the subject matter experts (SMEs) for validation and labeling and is designed to assist with vulnerability discovery within Safety Monitoring System programs. The second model is Robust and Explainable Semi-supervised Anomaly Detection (RESAD) model [2], which builds on CVAE to allow learning from both minimally labeled data (previously reviewed by the SMEs) as well as majority unlabeled data. RESAD takes advantage of graph theoretic techniques to propagate the labels from the labeled data to the unlabeled data based on a pre-defined similarity metric and structures the learned feature space from flight time-series so that data of the same class would cluster tightly together. This model characteristic is enabled by training with an augmented loss function and allows learning of a more informative feature space for down-stream tasks such as search and active learning. We demonstrate RESAD using data from the NASA DASHlink project [3].

anomaly detection

Phenomena Portal: Large- Scale Visual Exploration of Atmospheric Phenomena

The Earth science community is experiencing a high influx of remote sensing data due to recent advancements in sensor technology. This enables the community to extend their research on a larger scale than ever before. Unfortunately, traditional data processing techniques do not scale well to these new, high volume data sources. State-of-the-art machine learning (ML) pipelines have been proven to overcome these burdens in various other fields but are underexploited within the physical sciences community. Moreover, ML is reliant on labeled data, which is currently sparsely available, owing to the fact that ML adoption is still in the early stages within the Earth and atmospheric science communities. To address these issues, we developed the Phenomena Portal, a visual exploration tool that uses ML to detect various atmospheric phenomena on a global scale. This allows the Earth and atmospheric science communities to view trends of occurrences of phenomena, identify potential relationships between them, and analyze spatiotemporal patterns over time. These detections can also serve as initial labeled data for ML research pertaining to the respective phenomena. The tool also incorporates feedback from subject matter experts to further improve the model detection accuracy, thereby facilitating human-in-the-loop. This presentation will provide an overview of the ML model development and cloud deployment. We also discuss the capabilities of the user interface for displaying the detections.

Muthukumaran Ramasubramanian

GEONEX: Progressive Conditional Generative Adversarial Training Using Transfer learning

Obtaining accurate segmentation on large scale images is an open problem in deep learning. The main problem is the amount of labeled data that exists for large scale images. Traditionally, the common solution to this problem is to crop the large images into smaller images to increase the amount of available data and train a Conditional Generative Adversarial Network (CGAN). CGANs are currently the state of the art in image to image translation and provide better accuracy than the traditional method of training a encoder based conv-net architecture to minimize the loss at each pixel. This method can produce noisy and discontinuous images with inaccurate results. We seek to solve this problem by utilizing the concepts of transfer learning and progressive training to create a CGAN that can segment large scale images with a limited amount of labeled data. In transfer learning we recognize that many learned features are applicable to many classes from multiple domains. This introduces the concept of feature reusability, which is the basis for finetuning. Progressive training got its start in training models on the same images at different resolutions. In this work we instead train a GAN on increasing image scales by transferring the weights from the smaller scales to the larger scales. The learned features at the smaller scales are continually reused and applied to larger scales to create a CGAN that can perform accurate segmentation on large scale images. We apply this method to detect building footprints on very high-resolution overhead imagery (e.g Digital Globe and high resolution airborne platforms).

GEONEX

Collaborative Clustering for Sensor Networks

Traditionally, nodes in a sensor network simply collect data and then pass it on to a centralized node that archives, distributes, and possibly analyzes the data. However, analysis at the individual nodes could enable faster detection of anomalies or other interesting events, as well as faster responses such as sending out alerts or increasing the data collection rate. There is an additional opportunity for increased performance if individual nodes can communicate directly with their neighbors. Previously, a method was developed by which machine learning classification algorithms could collaborate to achieve high performance autonomously (without requiring human intervention). This method worked for supervised learning algorithms, in which labeled data is used to train models. The learners collaborated by exchanging labels describing the data. The new advance enables clustering algorithms, which do not use labeled data, to also collaborate. This is achieved by defining a new language for collaboration that uses pair-wise constraints to encode useful information for other learners. These constraints specify that two items must, or cannot, be placed into the same cluster. Previous work has shown that clustering with these constraints (in isolation) already improves performance. In the problem formulation, each learner resides at a different node in the sensor network and makes observations (collects data) independently of the other learners. Each learner clusters its data and then selects a pair of items about which it is uncertain and uses them to query its neighbors. The resulting feedback (a must and cannot constraint from each neighbor) is combined by the learner into a consensus constraint, and it then reclusters its data while incorporating the new constraint. A strategy was also proposed for cleaning the resulting constraint sets, which may contain conflicting constraints; this improves performance significantly. This approach has been applied to collaborative clustering of seismic and infrasonic data collected by the Mount Erebus Volcano Observatory in Antarctica. Previous approaches to distributed clustering cannot readily be applied in a sensor network setting, because they assume that each node has the same view of the data set. A view is the set of features used to represent each object. When a single data set is partitioned across several computational nodes, distributed clustering works; all objects have the same view. But when the data is collected from different locations, using different sensors, a more flexible approach is needed. This approach instead operates in situations where the data collected at each node has a different view (e.g., seismic vs. infrasonic sensors), but they observe the same events. This enables them to exchange information about the likely cluster membership relations between objects, even if they do not use the same features to represent the objects.

Wagstaff. Loro :/

Science information systems: Archive, access, and retrieval

The objective of this research is to develop technology for the automated characterization and interactive retrieval and visualization of very large, complex scientific data sets. Technologies will be developed for the following specific areas: (1) rapidly archiving data sets; (2) automatically characterizing and labeling data in near real-time; (3) providing users with the ability to browse contents of databases efficiently and effectively; (4) providing users with the ability to access and retrieve system independent data sets electronically; and (5) automatically alerting scientists to anomalies detected in data.

Campbell, William J.

FloodPlanet: High-Resolution Commercial Imagery for Training and Validation of Deep Learning-Based Models of Inundation Extent

Flooding events are becoming increasingly frequent worldwide and are known to cause extensive damage. Public optical and radar satellite imagery can be used to detect large areas of inundation in rural areas, however, long revisit times and coarse spatial resolution limit applications for short-lived events and urban areas. Commercial constellations such as those operated by Planet offer increased spatial and temporal resolution and can supplement mapping efforts to provide more information to disaster response, relief, and mitigation efforts. Deep learning requires high quality labeled data for training across coincident sensors. The FloodPlanet dataset presented here contains labeled surface water for 18 events across the world based on Planetscope imagery with coincident Harmonized Landsat Sentinel-2 ( HLS) or Sentinel-1 and builds upon the previously existing Sen1Floods11, xBD, and NASA Sentinel-1 datasets. Sen1Floods11 includes 4,831 512x512 pixel overlapping tiles of coincident Sentinel-1 and Sentinel-2 data observing 11 flood events across the world from 2017-2019. The dataset contains a combination of automated and hand-labeled surface water for use in training and validation of inundation modeling efforts. The xBD dataset identifies flood-damaged buildings and indicates the scale of damage to each (none, minor, moderate, and major) from four flood events which occurred in the United States, India, Nepal, and Bangladesh from the same time period. The NASA dataset contains hand-labeled water bodies observed in Sentinel-1 imagery during five flood events within the 2017-2019 period. The effort presented here utilizes observations from these previously investigated flood events to generate labels of surface water at the 3-5m spatial resolution provided by Planetscope and facilitate the comparison between public and commercial data. A data pipeline was built which uses clustering algorithms to pick the most suitable overlapping chips between the public data and PlanetScope data for manual labeling. Labels were created manually using NASA’s ImageLabeler tool and include areas of high- and low-confidence water. The high confidence designation is reserved for areas of open, unobstructed water while low confidence is used for areas of suspected water beneath vegetation, clouds, or cloud shadows. Expected to be released in late 2022, the FloodPlanet dataset will include tiled imagery with a unique ID for each 1024x1024 pixel tile, 7 bands of HLS data, and high- and low-confidence flood labels in both shapefile and tiff formats. The authors will follow Spatial Temporal Access Catalog (STAC) guidelines to release FloodPlanet on the Radiant Earth ML hub, which hosts public datasets for machine learning.

Alexander Melancon

A Quantitative Analysis on the Use of Supervised Machine Learning in Earth Science

Recent review papers (Ball et al., 2017; Reichstein et al., 2019) have investigated the opportunities and challenges in applying supervised machine learning (ML) techniques to Earth science problems. A common challenge is the lack of training (or labeled) data. Supervised ML, and especially deep learning (DL), require large training datasets. While there are large, open access Earth science archives, the data typically require preprocessing in preparation for supervised ML, frequently including manual labeling. Our objective is to understand the landscape of supervised ML in the Earth sciences, including which research communities have most rapidly adopted supervised ML, which algorithms are applied, and what data are used to train these algorithms. We conducted a literature survey of Earth science papers published during the last 10 years in journals from the American Geophysical Union (AGU), American Meteorological Society (AMS), the Institute of Electrical and Electronics Engineers(IEEE), and the Society of Photo-Optical Instrumentation Engineers (SPIE). We identified papers containing the terms ML, DL, or the names of individual supervised ML algorithms. "Earth science" is an additional required search term for IEEE and SPIE. We investigate trends in supervised ML usage during the 10-year study period, and manually analyzed AGU papers from 2018-2019 to enable deep-dive statistics.

Katrina S Virts

In Situ Water Quality Data for the Chesapeake Bay

This paper examines in situ water quality datameasured during2020-2021in the Chesapeake Bay for comparison with optical satellite data. Thiscollection was performed as part of a NASA project aiming to develop new methods for water quality monitoring from satellite remote sensingusing artificial intelligence. Our objective is to use insitu data as ground-truth to provide water quality classifications, or labels,to their overlapping (in time and location)satellite imagery. Having such labeled data, can help us achieve our project’s longer-termgoal:to train artificial intelligencemodelsto recognize features in spectral informationfor monitoringwater qualityfrom satellites. Because routine monitoring by state agencies is conducted at discrete locations, we obtained a flow-through system operated from small boats to measure waterquality parameters along transects for comparison with two-dimensional maps collected from space, with an initial focus on low oxygenevents, due to their large spatial extent and regular occurrence each summer.We also evaluated similar in situ data collected during 1984-2021by the Chesapeake Program.

Nargess Memarsadeghi

Value, Cost, and Sharing: Open Issues in Constrained Clustering

Clustering is an important tool for data mining, since it can identify major patterns or trends without any supervision (labeled data). Over the past five years, semi-supervised (constrained) clustering methods have become very popular. These methods began with incorporating pairwise constraints and have developed into more general methods that can learn appropriate distance metrics. However, several important open questions have arisen about which constraints are most useful, how they can be actively acquired, and when and how they should be propagated to neighboring points. This position paper describes these open questions and suggests future directions for constrained clustering research.

constraints

An Object-Oriented Interface to the CCSDS Ground Telecommand Services

The Telecommand Data Routing and Channel Services defined by the Consultative Committee for Space Data Systems (CCSDS) are flexible enough to support a myriad of commanding models. Because the standard is so broad, the traditional approach has been to implement only the portion of the standard needed by the particular spacecraft being tested/operated. Tasked with providing Telecommand Services for an entire class of spacecraft, where each spacecraft may choose any valid CCSDS commanding model, NASA Code 584 designed a common architecture capable of handling the full CCSDS protocol. The solution uses another CCSDS standard - the Standard Formatted Data Unit (SFDU) as the interface to the Telecommand Services. SFDUs provide a consistent way of labelling data objects, as well as allowing data objects to encapsulate other data objects. The resulting interface is: - Flexible: The full Data Routing and Channel Services are available via a single interface. The client (i.e. the command source) may enter commands at any layer within the protocol stack, specify any of the data aggregation or segmentation methods, and dynamically set any configuration parameter defined in the standard. - Object-oriented: Each object specifies both the data and the actions to be performed with the data. An object may contain other objects. - Expandable: New capabilities are added by defining new objects. Objects pass thru the protocol layers until they reach the applicable layer. The resulting design is: - Modular: The logic for each protocol layer is contained in a separate Application Program Interface (API). The objects used for the external interface are also used for communication between layers. - Distributable: The design can be split along any layer boundary for distribution across multiple machines. The objects ensure data consistency across platforms. This paper describes the SFDU-based interface and the resulting protocol implementation. The implementation is currently used by NASA (National Aeronautics and Space Administration) for integration & test of the microwave Anisotropy Probe (MAP) and Earth observer-I (EO-l) spacecraft. It will be used for post-launch operations of these spacecraft as well as the Imager for Magnetopause to Aurora Global Exploration (IMAGE) spacecraft.

Ray, Timothy Joseph