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Search indexed NASA NTRS and DOE OSTI research on propulsion, heat transfer, battery materials and energy systems. Follow report and document links to the original sources.

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At least 19 records
All sourcesNASA NTRSDOE OSTI
DOE OSTI2023

tRNA shape is an identity element for an archaeal pyrrolysyl-tRNA synthetase from the human gut

Protein translation is orchestrated through tRNA aminoacylation and ribosomal elongation. Among the highly conserved structure of tRNAs, they have distinguishing features which promote interaction with their cognate aminoacyl tRNA synthetase (aaRS). These key features are referred to as identity elements. In our study, we investigated the tRNA:aaRS pair that installs the 22nd amino acid, pyrrolysine (tRNAPyl:PylRS). Pyrrolysyl-tRNA synthetases (PylRSs) are naturally encoded in some archaeal and bacterial genomes to acylate tRNAPyl with pyrrolysine. Their large amino acid binding pocket and poor recognition of the tRNA anticodon have been instrumental in incorporating > 200 noncanonical amino acids. PylRS enzymes can be divided into three classes based on their genomic structure. Two classes contain both an N-terminal and C-terminal domain, however the third class (ΔpylSn) lacks the N-terminal domain. In this study we explored the tRNA identity elements for a ΔpylSn tRNAPyl from Candidatus Methanomethylophilus alvus which drives the orthogonality seen with its cognate PylRS (MaPylRS). From aminoacylation and translation assays we identified five key elements in ΔpylSn tRNAPyl necessary for MaPylRS activity. The absence of a base (position 8) and a G–U wobble pair (G28:U42) were found to affect the high-resolution structure of the tRNA, while molecular dynamic simulations led us to acknowledge the rigidity imparted from the G–C base pairs (G3:C70 and G5:C68).

59 BASIC BIOLOGICAL SCIENCES↗
DOE OSTI2026

Assessing Metal Ion Assignment Accuracy in Protein Data Bank Models via Elemental Spectroscopy

Accurate representation of metal ions in macromolecular structures is critical for chemical interpretation, computational modeling, and machine-learning methods that rely on Protein Data Bank (PDB) entries. However, the elemental identity of metals modeled in crystallographic structures is often inferred indirectly and rarely validated experimentally. Here, we combine Particle Induced X-ray Emission (PIXE) and X-ray Fluorescence Spectroscopy (XRFS) to determine the elemental composition of protein samples used to generate 70 deposited metalloprotein crystal structures. By analyzing the original protein material employed for crystallization, but before the addition of crystallization buffer solutions, we assess whether the modeled metal ions in deposited structures are consistent with experimentally detectable elemental content. We find that in a majority of cases, the metals modeled in the corresponding PDB entries are inconsistent with the metals present in the protein samples before crystallization, or that additional metals are present but not represented in the structural models. Spectroscopic results were integrated with automated crystallographic validation metrics, including real-space Z-difference (RSZD) analysis and systematic rerefinement, to evaluate atomic-number mismatch at metal sites. PIXE and XRFS show strong agreement for dominant elemental signals and provide complementary, scalable approaches for identifying suspect metal assignments. This work does not address physiological or functional metalation but instead highlights a widespread data integrity issue in deposited macromolecular structures, PDB-wide. These results establish an experimentally corroborated link between elemental identity and crystallographic validation metrics, enabling the large-scale detection of chemically inconsistent annotations in structural databases used for computational modeling and machine learning.

Crystallization↗
NASA NTRS1979

The response of a disturbed pipe flow to an upstanding roughness element

The paper describes measurements of mean velocity, turbulence intensity and Reynolds shear stress made downstream of a ring-type roughness element of rectangular cross section situated downstream of an identical element. The distance between the elements was varied, and velocity and turbulence profiles in the wake of the downstream element are compared with wake profiles behind a single element. The results show that the leading element can increase the power law exponent of the velocity profile as the spacing between elements is reduced. Turbulence generated in the wake of the first element raises turbulence intensity in the outer region of the wake of the second. The internal boundary layer originating with the second element grows at a rate which depends on the spacing. It is postulated that the internal boundary layers of subsequent roughness elements are determinants in the formation of a periodic wall layer.

Chang, J.↗
DOE OSTI2023

The Metal-weak Milky Way Stellar Disk Hidden in the Gaia–Sausage–Enceladus Debris: The APOGEE DR17 View

We have for the first time identified the early stellar disk in the Milky Way by using a combination of elemental abundances and kinematics. Using data from APOGEE DR17 and Gaia we select stars in the Mg–Mn–Al–Fe plane with elemental abundances indicative of an accreted origin and find stars with both halo-like and disk-like kinematics. The stars with halo-like kinematics lie along a lower sequence in [Mg/Fe], while the stars with disk-like kinematics lie along a higher sequence. Combined with astroseismic observations, we determine that the stars with halo-like kinematics are old, 9–11 Gyr, and that the more evolved stellar disk is about 1–2 Gyr younger. We show that the in situ fraction of stars on deeply bound orbits is not small, in fact the inner Galaxy likely harbors a genuine in situ population together with an accreted one. In addition, we show that the selection of the Gaia–Sausage–Enceladus in the E n -L z plane is not very robust. In fact, radically different selection criteria give almost identical elemental abundance signatures for the accreted stars.

79 ASTRONOMY AND ASTROPHYSICS↗
DOE OSTI2022

Generalizations of the double-copy: the KLT bootstrap

We formulate a new program to generalize the double-copy of tree amplitudes. The approach exploits the link between the identity element of the “KLT algebra” and the KLT kernel, and we demonstrate how this leads to a set of KLT bootstrap equations that the double-copy kernel has to satisfy in addition to locality constraints. We solve the KLT bootstrap equations perturbatively to find the most general higher-derivative corrections to the 4- and 5-point field theory KLT kernel. The new kernel generalizes the string KLT kernel and its associated monodromy relations. It admits new color-structures in the effective theories it double-copies. It provides distinct generalized KK and BCJ relations for the left and right single-color theories and is in that sense a ‘heterotic’-type double-copy. We illustrate the generalized double-copy in detail for 4d Yang-Mills theory with higher-derivative corrections that produce dilaton-axion-gravity with local operators up order ∇ 10 R 4 . Finally, we initiate a search for new double-copy kernels.

72 PHYSICS OF ELEMENTARY PARTICLES AND FIELDS↗
DOE OSTI2022

Simpler optimized stellarators using permanent magnets

Abstract A first-of-a-kind optimized stellarator for confining plasma has been designed and is being constructed with planar circular coils and permanent magnets composed of identical elements. The equilibrium is optimized to be quasi-axisymmetric for good particle confinement. The combination of permanent magnets and planar coils is significantly simpler to construct than fabricating three-dimensionally shaped coils, yet they are able to produce lower helical magnetic ripple than existing devices by two orders of magnitude in ϵ eff 3 / 2 , a characteristic neoclassical transport metric.

70 PLASMA PHYSICS AND FUSION TECHNOLOGY↗
DOE OSTI2022

The tRNA discriminator base defines the mutual orthogonality of two distinct pyrrolysyl-tRNA synthetase/tRNAPyl pairs in the same organism

Abstract Site-specific incorporation of distinct non-canonical amino acids into proteins via genetic code expansion requires mutually orthogonal aminoacyl-tRNA synthetase/tRNA pairs. Pyrrolysyl-tRNA synthetase (PylRS)/tRNAPyl pairs are ideal for genetic code expansion and have been extensively engineered for developing mutually orthogonal pairs. Here, we identify two novel wild-type PylRS/tRNAPyl pairs simultaneously present in the deep-rooted extremely halophilic euryarchaeal methanogen Candidatus Methanohalarchaeum thermophilum HMET1, and show that both pairs are functional in the model halophilic archaeon Haloferax volcanii. These pairs consist of two different PylRS enzymes and two distinct tRNAs with dissimilar discriminator bases. Surprisingly, these two PylRS/tRNAPyl pairs display mutual orthogonality enabled by two unique features, the A73 discriminator base of tRNAPyl2 and a shorter motif 2 loop in PylRS2. In vivo translation experiments show that tRNAPyl2 charging by PylRS2 is defined by the enzyme's shortened motif 2 loop. Finally, we demonstrate that the two HMET1 PylRS/tRNAPyl pairs can simultaneously decode UAG and UAA codons for incorporation of two distinct noncanonical amino acids into protein. This example of a single base change in a tRNA leading to additional coding capacity suggests that the growth of the genetic code is not yet limited by the number of identity elements fitting into the tRNA structure.

59 BASIC BIOLOGICAL SCIENCES↗
NASA NTRS1993

A proof of the Woodward-Lawson sampling method for a finite linear array

An extension of the continuous aperture Woodward-Lawson sampling theorem has been developed for a finite linear array of equidistant identical elements with arbitrary excitations. It is shown that by sampling the array factor at a finite number of specified points in the far field, the exact array factor over all space can be efficiently reconstructed in closed form. The specified sample points lie in real space and hence are measurable provided that the interelement spacing is greater than approximately one half of a wavelength. This paper provides insight as to why the length parameter used in the sampling formulas for discrete arrays is larger than the physical span of the lattice points in contrast with the continuous aperture case where the length parameter is precisely the physical aperture length.

Somers, Gary A.↗
NASA NTRS2000

Particle Identification in the ACCESS Mission

ACCESS (Assembly Concept for Construction of Erectable Space Structures) is a planned Space Station mission to measure the elemental energy spectra of Galactic cosmic rays at energies above 100 GeV/nuc. ACCESS consists of a transition radiation detector (TRD) mounted on top of an ionization calorimeter (IC). A silicon matrix detector placed on top of the IC determines the elemental identity of each cosmic ray measured by the IC. The silicon matrix must be designed to identify each cosmic ray in the presence of backscatter from the calorimeter. Because the TRD is mounted above the IC, the matrix must also recognize cosmic rays that have interacted within the TRD before reaching the IC. We will report the results of detailed GEANT simulations of the silicon matrix in ACCESS. Results will be presented on backscatter interference with charge identification and the ability of the matrix to recognize cosmic rays that interacted in the TRD.

Wang, J. Z.↗
NASA NTRS2006

The Zero-Degree Detector System

We will report on a detector system used for accelerator measurement of nuclear fragmentation cross sections. This system consists of two detector planes, each carrying a ring of 8 detectors. Each detector has 64 pads. These two detector planes are arranged facing each other so that the matching detector pads on each plane form a two element charged particle telescope. Each of these telescopes is capable of determining the elemental identity of nuclear fragments passing through it. The system is used to measure light fragment production in the presence of heavier fragments. We will present a detailed discussion of the 64-pad detector design, the substrate design. The front-end electronics used to read out the signals is based on a custom VLSI chip developed for the Advanced Thin Ionization Calorimeter experiment which has been flown successfully twice in Antarctica. Each of these chips has 16 channels and each channel consists of a charge-sensitive preamplifier followed by a shaping amplifier and a track-and-hold circuit. The track-and-hold circuits are connected via a multiplexer to an output line driver. This allows the held signals to be presented, one-by-one via a common data line to a analog-to-digital converter. Because the output line driver can be placed in a high input impedance state when not in use, it is possible to daisy-change many chips on the same common data line. The front-end electronics and data readout scheme will be discussed in detail. The Zero Degree Detector has been used in several accelerator experiments conducted at the NASA Space Radiation Laboratory and the Alternating Gradient Synchrotron at Brookhaven National Laboratory as well as at the HIMAC accelerator in Japan. We will show examples of data taken at these accelerator runs to demonstrate how the system works.

Adams, James H.↗
NASA NTRS1993

A dynamic melting model for the origin of Apollo 15 olivine-normative and quartz-normative mare basalts

Early studies of mare basalts from the Apollo 15 site established that two distinct groups are represented: the olivine-normative basalts (ONB) and the quartz-normative basalts (QNB). The ONB and QNB suites are distinguished petrographically by their phenocryst assemblages (the ONB's are olivine-phyric, the QNB's are generally pyroxene-phyric) and chemically by their major element compositions: the QNB's are higher in SiO2 and MgO/FeO, and lower in FeO and TiO2 than ONB's with similar MgO contents. Experimental data show that the QNB suite is derived from a more magnesian, olivine-normative parent magma, a conclusion which is supported by the recent discovery of high-SiO2 olivine-normative basalt clasts in breccia 15498. The high-SiO2 ONB's fall on olivine control lines with primitive QNB's, and least-squares mixing calculations are consistent with the high-SiO2 ONB's being parental to the more evolved QNB suite. These high-SiO2 ONB's are included as part of the 'QNB suite'. Our major element modeling results also are consistent with the conclusions of earlier studies which showed that the ONB and QNB suites cannot be related to one another by low pressure crystal fractionation. The combination of high Mg#, high SiO2, and low TiO2 in the QNB suite precludes a relationship to the ONB suite by simple removal of liquidus minerals (olivine and pigeonite). Despite these significant differences in petrography and major element composition, both groups have nearly identical trace element concentrations and chondrite-normalized abundance patterns. The major question to be addressed by any petrogenetic model for Apollo 15 mare basalts is how to form mare basalt suites with distinctly different major element characteristics but nearly identical trace element compositions. The similarity in trace element concentrations imply compositionally similar source regions and similar percent melting, but these conclusions are not easily reconciled with the observed differences in major element compositions, which require sources with distinct mineralogies or large differences in percent melt.

Vetter, Scott K.↗
NASA NTRS1991

An improved distributed arithmetic architecture

Speed requirements have been, and will continue to be, a major consideration in the design of hardware to implement digital signal processing functions like digital filters and transforms like the DFT and DCT. The conventional approach is to increase speed by adding hardware and increasing chip area. The real challenge is to save chip area while still maintaining high speed performance. The approach we propose is based on the distributed arithmetic implementation (DA) of digital filters. The improvement is based on two observations. Firstly, a single memory element can replace several identical memory elements in a fully parallel DA implementation. Secondly, truncation or rounding may be introduced into the computation at strategic points without increasing error unduly. Both of these approaches can be used to attain area savings without impairing speed of operation.

Guo, X.↗
NASA NTRS1995

ANSYS duplicate finite-element checker routine

An ANSYS finite-element code routine to check for duplicated elements within the volume of a three-dimensional (3D) finite-element mesh was developed. The routine developed is used for checking floating elements within a mesh, identically duplicated elements, and intersecting elements with a common face. A space shuttle main engine alternate turbopump development high pressure oxidizer turbopump finite-element model check using the developed subroutine is discussed. Finally, recommendations are provided for duplicate element checking of 3D finite-element models.

Ortega, R.↗
NASA NTRS2010

Methods and circuitry for reconfigurable SEU/SET tolerance

A device is disclosed in one embodiment that has multiple identical sets of programmable functional elements, programmable routing resources, and majority voters that correct errors. The voters accept a mode input for a redundancy mode and a split mode. In the redundancy mode, the programmable functional elements are identical and are programmed identically so the voters produce an output corresponding to the majority of inputs that agree. In a split mode, each voter selects a particular programmable functional element output as the output of the voter. Therefore, in the split mode, the programmable functional elements can perform different functions, operate independently, and/or be connected together to process different parts of the same problem.

Shuler, Jr., Robert L.↗
DOE OSTI2023

Effect of Ionic Strength and Anion Identity on Rare‐Earth Element Chelation by Poly(acrylic acid)

Abstract Rare‐earth elements (REEs) are critical components of many modern technologies, but their efficient separation and purification continue to pose significant challenges. Metal‐binding polymers may enable the development of promising alternative approaches to conventional separation techniques (e.g., solvent extraction), and insights into the interactions between the metal ions and polymers in solution are crucial to such development. In this work, the effect of ionic strength on the chelation of REEs by poly(acrylic acid) is investigated using isothermal titration calorimetry (ITC) to measure the metal‐binding thermodynamics. ITC experiments revealed that when ionic strength increases from increasing the sodium acetate buffer strength, polymer‐REE binding becomes increasingly disfavored. However, when ionic strength is increased by the addition of sodium chloride, binding again becomes increasingly disfavored, but to a lesser extent than when ionic strength increases from increasing the buffer strength. Additionally, the reduction in binding affinity is enthalpically driven when ionic strength is raised with sodium chloride, while it is entropically driven when raised with sodium acetate buffer, suggesting competive binding by the acetate ions. These results highlight the importance of ionic strength in polymer‐metal binding thermodynamics and will guide the development of new processes for the purification of critical metals.

37 INORGANIC, ORGANIC, PHYSICAL, AND ANALYTICAL CH↗
NASA NTRS2015

Summary of Liquid Oxygen/Hydrogen, Direct Metal Laser Sintering Injector Testing and Evaluation Effort at Marshall Space Flight Center

The last several years have witnessed a significant advancement in the area of additive manufacturing technology. One area that has seen substantial expansion in application has been laser sintering (or melting) in a powder bed. This technology is often termed 3D printing or various acronyms that may be industry, process, or company specific. Components manufactured via 3D printing have the potential to significantly reduce development and fabrication time and cost. The usefulness of 3D printed components is influenced by several factors such as material properties and surface roughness. This paper details three injectors that were designed, fabricated, and tested in order to evaluate the utility of 3D printed components for rocket engine applications. The three injectors were tested in a hot‐fire environment with chamber pressures of approximately 1400 psia. One injector was a 28 element design printed by Directed Manufacturing. The other two injectors were identical 40 element designs printed by Directed Manufacturing and Solid Concepts. All the injectors were swirl‐coaxial designs and were subscale versions of a full‐scale injector currently in fabrication. The test and evaluation programs for the 28 element and 40 element injectors provided a substantial amount of data that confirms the feasibility of 3D printed parts for future applications. The operating conditions of previously tested, conventionally manufactured injectors were reproduced in the 28 and 40 element programs in order to contrast the performance of each. Overall, the 3D printed injectors demonstrated comparable performance to the conventionally manufactured units. The design features of the aforementioned injectors can readily be implemented in future applications with a high degree of confidence.

Barnett, Gregory↗
NASA NTRS1986

A 405-MHz, 5-beam phased array antenna

The Wave Propagation Lab. has completed the design and construction of a phased array antenna for use at 405.25 MHz for atmospheric wind profiling. The steering geometry of the sequentially switched beam is shown. The Yagi-Uda antenna elements are arranged on a square grid whose axes are 45 deg with respect to the cardinal directions. By constraining the phase difference between rows of identically phased elements to an even, integral submultiple of 360 deg, symmetries appear in the phasing maps which reduce the switching hardware. The vertical beam is generated by switching around the four beam circuitry which results in identical phasing on all of the elements. After the 18 signals are synthesized they are split and distributed about the array while maintaining proper phasing because of the symmetries. Computer simulations were employed in the design process.

Law, D. C.↗
NASA NTRS1989

Multichannel, Active Low-Pass Filters

Multichannel integrated circuits cascaded to obtain matched characteristics. Gain and phase characteristics of channels of multichannel, multistage, active, low-pass filter matched by making filter of cascaded multichannel integrated-circuit operational amplifiers. Concept takes advantage of inherent equality of electrical characteristics of nominally-identical circuit elements made on same integrated-circuit chip. Characteristics of channels vary identically with changes in temperature. If additional matched channels needed, chips containing more than two operational amplifiers apiece (e.g., commercial quad operational amplifliers) used. Concept applicable to variety of equipment requiring matched gain and phase in multiple channels - radar, test instruments, communication circuits, and equipment for electronic countermeasures.

Lev, James J.↗