Synthesis and P1′ SAR exploration of potent macrocyclic tissue factor-factor VIIa inhibitors
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Ladziata, Vladimir (Uladzimir)↗
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Results for “factorization”
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Choosing the Best Carbon Factor for the Job: Exploring Available Carbon Emissions Factors and the Impact of Factor Selection
Over 600 local governments in the United States, including nearly half of the largest 100 cities, have enacted climate action plans that include carbon reduction goals and greenhouse gas inventories (Markolf et al. 2020). The magnitude of these goals ranges from modest reduction targets to carbon neutrality. None will be met without significant contributions from the buildings sector. Understanding how energy efficiency and building electrification impact greenhouse gas emissions requires local, time-sensitive, and forward-looking carbon emissions factors for electricity use in buildings. There are a variety of emissions factors currently available from various sources, including average emissions factors and historical short-run marginal emissions factors. Long-run marginal emissions factors and future-year short-run marginal emissions factors are also now available from the National Renewable Energy Laboratory's (NREL's) Cambium data sets. In this paper, we describe the different carbon emissions factors available, including both conventional sources and newly available options. We discuss the types of analyses each emissions factor is best suited to support. Then, using residential energy efficiency and electrification load profiles, we demonstrate how different conclusions result from different choices of carbon emissions factors. For two grid regions, we explore takeaways of using current versus future-year emissions, short-run versus long-run, and levelized versus single-year values. We include a framework for selecting the best carbon emissions factor for the job.
carbon emissions factors↗
Choosing the Best Carbon Factor for the Job: Exploring Available Carbon Emissions Factors and the Impact of Factor Selection: Preprint
Over 600 local governments in the United States, including nearly half of the largest 100 cities, have enacted climate action plans that include carbon reduction goals and greenhouse gas inventories (Markolf et al. 2020). The magnitude of these goals ranges from modest reduction targets to carbon neutrality. None will be met without significant contributions from the buildings sector. Understanding how energy efficiency and building electrification impact greenhouse gas emissions requires local, time-sensitive, and forward-looking carbon emissions factors for electricity use in buildings. There are a variety of emissions factors currently available from various sources, including average emissions factors and historical short-run marginal emissions factors. Long-run marginal emissions factors and future-year short-run marginal emissions factors are also now available from the National Renewable Energy Laboratory's (NREL's) Cambium data sets. In this paper, we describe the different carbon emissions factors available, including both conventional sources and newly available options. We discuss the types of analyses each emissions factor is best suited to support. Then, using residential energy efficiency and electrification load profiles, we demonstrate how different conclusions result from different choices of carbon emissions factors. For two grid regions, we explore takeaways of using current versus future-year emissions, short-run versus long-run, and levelized versus single-year values. We include a framework for selecting the best carbon emissions factor for the job.
carbon emissions factors↗
Causal Directions Matter: How Environmental Factors Drive Convective Cloud Detrainment Heights
This study investigates how environmental factors influence the level of maximum detrainment (LMD) in deep convective clouds. Through a novel application of the Linear Non‐Gaussian Acyclic Model (LiNGAM), we discover causal structures between environmental variables and LMD, observed at six tropical sites operated by the Atmospheric Radiation Measurement (ARM) user facility. LiNGAM effectively identifies causal directions among variables of interest, revealing robust relationships such as those among the lifting condensation level (LCL), level of free convection (LFC), and convective inhibition (CIN), aligning with prior knowledge. Relative humidity is shown to directly influence LMD; however, this relationship exhibits strong nonlinearity and becomes difficult to detect when the contrast between oceanic and continental environments is excluded from the analysis. This study highlights the importance of establishing causal relationships before performing statistical inference.
54 ENVIRONMENTAL SCIENCES↗
Modulating factors of hydrologic exchanges in a large-scale river reach: Insights from three-dimensional computational fluid dynamics simulations
Hyporheic exchange is a critical mechanism shaping hydrological and biogeochemical processes along a river corridor. Recent studies on quantifying the hyporheic exchange were mostly limited to local scales due to field inaccessibility, computational demand, and complexity of geomorphology and subsurface geology. Surface flow conditions and subsurface physical properties are well known factors on modulating the hyporheic exchange, but quantitative understanding of their impacts on the strength and direction of hyporheic exchanges at reach scales is absent. In this study, a high resolution computational fluid dynamics (CFD) model that couples surface and subsurface flow and transport is employed to simulate hyporheic exchanges in a 7-km long reach along the main-stem of the Columbia River. Assuming that the hyporheic exchange does not affect surface water flow conditions due to its negligible magnitude compared to the volume and velocity of river water, we developed a one-way coupled surface and subsurface water flow model using the commercial CFD software STAR-CCM+. The model integrates the Reynolds-averaged Navier-Stokes (RANS) equation solver with a realizable k-e two-layer turbulence model, a two-layer all y^+ wall treatment, and the volume of fluid (VOF) method, and is used to simulate hyporheic exchanges by tracking the free water-air interface as well as flow in the river and the subsurface porous media. The model is validated against measurements from acoustic Doppler current profiler (ADCP) in the stream water and hyporheic fluxes derived from a set of temperature profilers installed across the riverbed. The validated model is then employed to systematically investigate how hyporheic exchanges are influenced by surface water fluid dynamics strongly regulated by upstream dam operations, as well as subsurface structures (e.g. thickness of riverbed and subsurface formation layers) and hydrogeological properties (e.g. permeability). The results suggest that the thickness of riverbed alluvium layer is the dominant factor for reach-scale hyporheic exchanges, followed by the alluvium permeability, the depth of the underlying impermeable layer, and the assumption of hydrostatic pressure.
Bao, Jie↗
Human Factors in Streaming Data Analysis: Challenges and Opportunities for Information Visualization: Human Factors in Streaming Data Analysis
State-of-the-art visual analytics models and frameworks mostly assume a static snapshot of the data, while in many cases it is a stream with constant updates and changes. Exploration of streaming data poses unique challenges as machine-level computations and abstractions need to be synchronized with the visual representation of the data and the temporally evolving human insights. In the visual analytics literature, we lack a thorough characterization of streaming data and analysis of the challenges associated with task abstraction, visualization design, and adaptation of the role of human-in-the-loop for exploration of data streams. We aim to fill this gap by conducting a survey of the state-of-the-art in visual analytics of streaming data for systematically describing the contributions and shortcomings of current techniques and analyzing the research gaps that need to be addressed in the future. Our contributions are: i) problem characterization for identifying challenges that are unique to streaming data analysis tasks, ii) a survey and analysis of the state-of-the-art in streaming data visualization research with a focus on the visualization design space for dynamic data and the role of the human-in-the-loop, and iii) reflections on the design-trade-offs for streaming visual analytics techniques and their practical applicability in real-world application scenarios.
streaming data↗
Continuum stress intensity factors from atomistic fracture simulations
Stress intensity factors (SIFs) are utilized in continuum fracture mechanics to quantify the stress fields surrounding a crack in a homogeneous material in the linear elastic regime. Critical values of the SIFs define an intrinsic measure of the resistance of a material to propagate a crack. At atomic scales, yet, fracture occurs as a series of atomic bonds breaking, differing from the continuum description. As a consequence, a formal analog of the continuum SIFs calculated from atomistic simulations can have spatially localized, microstructural contributions that originate from varying bond configurations. The ability to characterize fracture at the atomic scale in terms of the SIFs offers both an opportunity to probe the effects of chemistry, as well as how the addition of a microstructural component affects the accuracy. We present a novel numerical method to determine SIFs from molecular dynamics (MD) simulations. The accuracy of this approach is first examined for a simple model, and then applied to atomistic simulations of fracture in amorphous silica. MD simulations provide time and spatially dependent SIFs, with results that are shown to be in good agreement with experimental values for fracture toughness in silica glass.
42 ENGINEERING↗
Socioeconomic and atmospheric factors affecting aerosol radiative forcing: Production-based versus consumption-based perspective
There exist substantial differences in top-of-atmosphere direct radiative forcing of aerosols due to a region's economic production (RFp) and consumption (RFc), in the context of economic globalization, trade and globalizing air pollution. Yet an explicit systematic analysis of all socioeconomic and atmospheric factors determining the RF difference is lacking. Here, we evaluate five socioeconomic (population, per capita output, emission intensity) and atmospheric (chemical efficiency and radiative efficiency) factors that determine a region's RFp, RFc and their difference. We consider the RF of secondary inorganic aerosols, primary organic aerosols and black carbon by 10 regions worldwide in 2007. The population size varies by a factor of nine across the regions, and per capita output by 40 times from both production- and consumption-based perspectives. The cross-regional spread reaches a factor of 181 (species dependent) for production-based emission intensity and a factor of 96 for consumption-based intensity. From one region to another, production-based chemical efficiency changes within a factor of 5 and consumption-based efficiency within a factor of 3.5. Radiative efficiency varies slightly across the regions (within 2) from both production- and consumption-based perspectives. Although socioeconomic factors are often a greater driver for the difference between a source region's RFp and RFc, the atmospheric factors are also important for many source regions and species. Our results contribute to regional attribution of climate change and establishment of effective international collaborative mitigation strategies.
aerosol radiative forcing↗
Exploration of Factors That Influence Willingness to Consider Pooled Rideshare
Ridesharing has become an increasingly prevalent form of transportation. Although transportation network companies such as Uber and Lyft initially started as a personal rideshare service where individuals ride alone or with people they know, rideshare services have been expanded to pooled rideshare—a dynamic rideshare system where an individual rides with passengers they do not know. Despite the growth in rideshare services worldwide, the use of pooled rideshare in the U.S.A. is relatively low compared to other forms of transportation. A national U.S. survey (N = 5385) was conducted to investigate reasons why individuals are willing or unwilling to consider pooled rideshare. Exploratory and confirmatory factor analyses were performed, where the exploratory factor analysis suggests five factors, specifically,service experience,time/cost,traffic/environment,privacy, andsafety. Model fit indices of the confirmatory factor analysis verified that these five factors can represent the factors behind riders’ willingness to consider pooled rideshare. Furthermore, a binomial logistic regression was conducted to explore how the five factors influence riders’ willingness to consider pooled rideshare. The three factors that influence riders’ willingness to consider pooled rideshare wereservice experience(B = 1.05),traffic/environment(B = .38), andtime/cost(B = .26), while a lack ofprivacy(B = −1.46) can be a deterrent for pooled rideshare.Safetyis important for those who are both willing and unwilling to consider the use of pooled rideshare. Understanding these factors is important for the future of pooled rideshare services in the U.S.A.
Engineering↗
Sparse Cholesky factorization for solving nonlinear PDEs via Gaussian processes
In recent years, there has been widespread adoption of machine learning-based approaches to automate the solving of partial differential equations (PDEs). Among these approaches, Gaussian processes (GPs) and kernel methods have garnered considerable interest due to their flexibility, robust theoretical guarantees, and close ties to traditional methods. They can transform the solving of general nonlinear PDEs into solving quadratic optimization problems with nonlinear, PDE-induced constraints. However, the complexity bottleneck lies in computing with dense kernel matrices obtained from pointwise evaluations of the covariance kernel, and its partial derivatives, a result of the PDE constraint and for which fast algorithms are scarce. The primary goal of this paper is to provide a near-linear complexity algorithm for working with such kernel matrices. We present a sparse Cholesky factorization algorithm for these matrices based on the near-sparsity of the Cholesky factor under a novel ordering of pointwise and derivative measurements. The near-sparsity is rigorously justified by directly connecting the factor to GP regression and exponential decay of basis functions in numerical homogenization. We then employ the Vecchia approximation of GPs, which is optimal in the Kullback-Leibler divergence, to compute the approximate factor. This enables us to compute ϵ-approximate inverse Cholesky factors of the kernel matrices with complexity O(N log d (N/ϵ)) in space and O(N log 2d (N/ϵ)) in time. We integrate sparse Cholesky factorizations into optimization algorithms to obtain fast solvers of the nonlinear PDE. We numerically illustrate our algorithm’s near-linear space/time complexity for a broad class of nonlinear PDEs such as the nonlinear elliptic, Burgers, and Monge-Ampère equations. In summary, we provide a fast, scalable, and accurate method for solving general PDEs with GPs and kernel methods.
97 MATHEMATICS AND COMPUTING↗
Willingness to Consider Pooled Rideshare?: An Exploratory Study on Influential Factors
Rideshare use has grown significantly, beginning with solo riders and evolving to pooled rideshare. Pooled rideshare involves sharing a ride with stranger(s). Despite the growth in rideshare services worldwide, the use of pooled rideshare in the U.S. is relatively low within all rideshare trips and compared to other forms of transportation, e.g., driving one's personal vehicle. A national survey of 5,385 individuals was conducted to identify factors influencing riders' willingness to consider pooled rideshare. Exploratory and confirmatory factor analyses were performed. The survey results indicated five factors: service experience, time/cost, traffic/environment, privacy, and safety. Understanding these factors is crucial for the future of dynamic ridesharing services in the U.S.
Su, Haotian↗
RNA extension drives a stepwise displacement of an initiation-factor structural module in initial transcription
Explore the source record for details and available documents.
99 GENERAL AND MISCELLANEOUS↗
Factors Influencing Adoption of Pooled Rideshare An Explorative Study on User-Centered Design and Services
The rise of real-time information communication through smartphones and wireless networks enabled the growth of ridesharing services. While personal rideshare services (individuals ride alone or with people they know) initially dominated the market, the popularity of pooled ridesharing (individuals share rides with strangers) has grown globally. However, pooled rideshare remains less common in the U.S., where personal vehicle usage is still the norm. Vehicle design and rideshare services may need to be tailored to user preferences to increase pooled rideshare adoption. A national U.S. survey ( N = 5,385) used exploratory and confirmatory factor analyses to identify four key factors influencing riders’ willingness to consider pooled rideshare: comfort/ease of use, convenience, vehicle technology/accessibility, and passenger safety. Understanding and implementing these user-centered design principles and service-related factors may be critical for increasing the future use of pooled rideshare services
Gangadharaiah, Rakesh↗
Dwarf spheroidal J-factor likelihoods for generalized NFW profiles
ABSTRACT Indirect detection strategies of particle dark matter (DM) in Dwarf spheroidal satellite galaxies (dSphs) typically entail searching for annihilation signals above the astrophysical background. To robustly compare model predictions with the observed fluxes of product particles, most analyses of astrophysical data – which are generally frequentist – rely on estimating the abundance of DM by calculating the so-called J factor. This quantity is usually inferred from the kinematic properties of the stellar population of a dSph using the Jeans equation, commonly by means of Bayesian techniques that entail the presence (and additional systematic uncertainty) of prior choice. Here, extending earlier work, we develop a scheme to derive the profile likelihood for J factors of dwarf spheroidals for models with five or more free parameters. We validate our method on a publicly available simulation suite, released by the Gaia Challenge, finding satisfactory statistical properties for bias and probability coverage. We present the profile likelihood function and maximum likelihood estimates for the J-factor of 10 dSphs. As an illustration, we apply these profile likelihoods to recently published analyses of γ-ray data with the Fermi Large Area Telescope to derive new, consistent upper limits on the DM annihilation cross-section. We do this for a subset of systems, generally referred to as classical dwarfs. The implications of these findings for DM searches are discussed, together with future improvements and extensions of this technique.
79 ASTRONOMY AND ASTROPHYSICS↗
Developing Generic Prior Distributions for Common Cause Failure Alpha Factors and Causal Alpha Factors
This report is a revision of the original report, INL/LTD-17-43723. Distribution of the original report was to the Nuclear Regulatory Commission (NRC) only, and the report was not made available to the public. The original report was revised as this report for public distribution. This report presents the latest update of generic prior distributions for common cause failure (CCF) alpha factors, as well as the development of new generic prior distributions for CCF causal alpha factors. The history of CCF treatment and parameter estimations is reviewed. The existing process for developing generic prior distributions is reviewed and used to develop new priors for CCF alpha factors and causal alpha factors. For causal alpha factors, different priors are developed for the five different CCF cause groups: Component (GC), Design (GD), Environment (GE), Human (GH), and Other (GO). These generic prior distributions could be used in the Standardized Plant Analysis Risk (SPAR) models for CCF parameter estimation. The issues and preliminary thoughts regarding prior distribution development are documented. Potential future work is then proposed for improving the process of developing priors.
21 SPECIFIC NUCLEAR REACTORS AND ASSOCIATED PLANTS↗
Regulation of Nitrogen Metabolism by GATA Zinc Finger Transcription Factors in Yarrowia lipolytica
Nitrogen source is commonly used to control lipid production in industrial fungi. Here we identified regulators of nitrogen catabolite repression in the oleaginous yeast Y. lipolytica to determine how the nitrogen source regulates lipid metabolism. We show that disruption of both activators and repressors of nitrogen catabolite repression leads to increased lipid accumulation via activation of carbon catabolite repression through an as yet uncharacterized method.
59 BASIC BIOLOGICAL SCIENCES↗