Use of Bayesian Networks for Qualification Planning: Early Results of Factor Analysis.
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This submission contains information used to compute the combined risk factors for deep geothermal energy opportunities in the Appalachian Basin, in the context of a the Play Fairway Analysis project. The risk factors are sedimentary rock reservoir quality, thermal resource quality, potential for induced seismicity, and utilization for direct-use heating of neighborhoods. The methods used to combine the risk factors included taking the average, the geometric mean, and the minimum of the four risk factors. Combined risk maps are provided for three different sedimentary rock reservoir metrics. Combined risk maps are also provided for the three geologic risk factors alone (thermal, reservoir, and seismic), and for the three risk factors that exclude reservoir quality (utilization, seismicity, and thermal qualities). The 2015 data submission should be visited to obtain associated shapefiles, which include: 1) definition of the High and Medium priority play fairways (Inner_Fairway, and Outer_Fairway), 2) definition of the US Census Places (usCensusPlaces), 3) places (cities) of interest in the region (Places_of_Interest) identified as geothermal play fairways, 4) the point centers of the raster cells (Raster_Center_Locations), and 5) locations of industries and special-use communities (e.g., colleges and military bases) identified as low temperature heat users (Industries). The 2015 submission also includes: 1) a methodology memo that explains how the risk factors were combined (GPFA-AB_combining_risk_factors.pdf), 2) the earthquake-based seismic risk map, and 3) supporting information with details of the calculations or processing used in generating these data files. More details on each file are given in the spreadsheet "list_of_contents.xlsx" in the folder "Supporting_Information". Code used to calculate values is available at https://github.com/calvinwhealton/geothermal_pfa under the folder "combining_metrics". Note that the 2016 code is currently under the branch named "combining_metrics_2016" in the folder called "combining_metrics". This branch may be merged with the master branch in the future. Many files contained within this submission update and replace the indicated files contained in: Cornell University. (2015). Risk Factor Analysis in Low-Temperature Geothermal Play Fairway Analysis for the Appalachian Basin (GPFA-AB) [data set]. Retrieved from https://gdr.openei.org/submissions/622. doi:10.15121/1261942
We introduce new dictionary learning methods for tensor-variate data of any order. We represent each data item as a sum of Kruskal decomposed dictionary atoms within the framework of beta-process factor analysis (BPFA). Our model is nonparametric and can infer the tensor-rank of each dictionary atom. This Kruskal-Factor Analysis (KFA) is a natural generalization of BPFA. We also extend KFA to a deep convolutional setting and develop online learning methods. We test our approach on image processing and classification tasks achieving state of the art results for 2D & 3D inpainting and Caltech 101. The experiments also show that atom-rank impacts both overcompleteness and sparsity.
Purpose: To analyze factors potentially associated with the occurrence of distal edge stenosis after stent placement for isolated superior mesenteric artery dissection (ISMAD). Materials and Methods: Cases of consecutive patients who were diagnosed with spontaneous ISMAD between February 2010 and July 2018 were retrospectively identified. Of the 123 cases identified, 45 patients (42 men; three women) underwent endovascular stent placement and were included in the study. Univariate and multivariate analyses were used to assess factors potentially associated with distal edge stenosis. Results: The technical success rate among study patients was 100%. During 26.7 ± 17.3 months of follow-up, CT angiography demonstrated good distal edge patency in 25 patients (55.6%) and evidence of distal edge stenosis in 20 patients (44.4%). In univariate analysis, stent length (odds radio [OR] 1.03; 95% confidence interval [CI] 1.01, 1.06; P = .02), stent-to-vessel (S/V) diameter ratio (OR 2.27; 95% CI 1.35, 3.82; P < .01), and angulation at the distal edge (OR 1.05; 95% CI 1.00, 1.10; P =.03) were significantly associated with distal edge stenosis; only S/V diameter ratio (OR 3.36; 95% CI 1.41, 7.99; P < .01) and angulation at the distal edge (OR 1.12; 95% CI 1.01, 1.23; P =.03) retained this significance in multivariate analysis. Conclusions: Distal edge stenosis after stent placement for ISMAD is common. S/V diameter ratio and angulation at the distal edge are independent risk factors for distal edge stenosis in patients with ISMAD who undergo stent placement.
Purpose: To evaluate whether clinical risk factors could further distinguish children with intermediate-risk Hodgkin lymphoma (HL) with rapid early and complete anatomic response (RER/CR) who benefit significantly from involved-field RT (IFRT) from those who do not, and thereby aid refinement of treatment selection. Methods and Materials: Children with intermediate-risk HL treated on the Children's Oncology Group AHOD 0031 trial who achieved RER/CR with 4 cycles of chemotherapy, and who were randomized to 21-Gy IFRT or no additional therapy (n=716) were the subject of this study. Recursive partitioning analysis was used to identify factors associated with clinically and statistically significant improvement in event-free survival (EFS) after randomization to IFRT. Bootstrap sampling was used to evaluate the robustness of the findings. Result: Although most RER/CR patients did not benefit significantly from IFRT, those with a combination of anemia and bulky limited-stage disease (n=190) had significantly better 4-year EFS with the addition of IFRT (89.3% vs 77.9% without IFRT; P=.019); this benefit was consistently reproduced in bootstrap analyses and after adjusting for other prognostic factors. Conclusion: Although most patients achieving RER/CR had favorable outcomes with 4 cycles of chemotherapy alone, those children with initial bulky stage I/II disease and anemia had significantly better EFS with the addition of IFRT as part of combined-modality therapy. Further work evaluating the interaction of clinical and biologic factors and imaging response is needed to further optimize and refine treatment selection.
Rational design–guided improvement of protein thermostability typically requires identification of residues or regions contributing to instability and introduction of mutations into these residues or regions. One popular method, B-FIT, utilizes B-factors to identify unstable residues or regions and combines them with other strategies, such as directed evolution. Here, we performed structure-based engineering to improve the thermostability of the subtilisin E-S7 (SES7) peptidase. The B-value of each residue was redefined in a normalized B-factor calculation, which was implemented with a refined bioinformatics analysis strategy to identify the critical area (loop 158–162) related to flexibility and to screen for suitable thermostable motif sequences in the Protein Data Bank that can act as transplant loops. In total, we analyzed 445 structures and identified 29 thermostable motifs as candidates. Using these motifs as a starting point, we performed iterative homologous modeling to obtain a desirable chimera loop and introduced five different mutations into this loop to construct thermostable SES7 proteins. Differential scanning fluorimetry revealed increases of 7.3 °C in the melting temperature of an SES7 variant designated M5 compared with the WT. The X-ray crystallographic structure of this variant was resolved at 1.96 Å resolution. The crystal structure disclosed that M5 forms more hydrogen bonds than the WT protein, consistent with design and molecular dynamics simulation results. In summary, the modified B-FIT strategy reported here has yielded a subtilisin variant with improved thermostability and promising industrial applications, supporting the notion that this modified method is a powerful tool for protein engineering.
Computer-based facial recognition algorithms exploit the unique characteristics of faces in images. However, in non-cooperative situations these unique characteristics are often disturbed. In this study, we examine the effect of six different factors on face detection in an unconstrained imaging environment: image brightness, image contrast, focus measure, eyewear, gender, and occlusion. The aim of this study is twofold: first, to quantify detection rates of conventional Haar cascade algorithms across these six factors; and second, to propose methods for automatically labeling datasets whose size prohibits manual labeling. First, we manually classify a uniquely challenging dataset comprising 9,688 images of passengers in vehicles acquired from a roadside camera system. Next, we quantify how each of the aforementioned factors affect face detection on this dataset. Of the six factors studied, occlusion had the most significant impact, resulting in a 54% decrease in detection rate between unoccluded and severely occluded faces in our unique dataset. Finally, we provide a methodology for data analytics of large datasets where manual labeling of the whole dataset is not possible.
Axion haloscope experiments aim to detect the conversion of axions into microwave photons in a magnetic field, which produces extremely small signals requiring low-loss cryogenic transmission lines for readout to reduce noise and attenuation. Yttrium Barium Copper Oxide (YBCO) cables are a promising candidate. Unlike commonly used low-loss superconducting cables such as Niobium (Nb) and Niobium Titanium (NbTi), which have low critical fields, YBCO is a high-temperature superconductor that can remain stable in strong magnetic fields. We evaluate their suitability by characterizing the quality and loss factors of five stripline resonators (three YBCO, and copper and silver references) from the Brookhaven Technology Group at 77 K without an external field, and cooled to 30 mK in a 14 T magnet. For measurements at 77 K we recorded scattering parameter data and employed Lorentzian and circle-fitting analysis techniques. We identified the best-performing resonator and developed a cryogenic probe for future testing in the magnet at millikelvin temperatures.
In the framework of the OECD/NEA International Reactor Physics Experiment (IRPHE) Project, an evaluation of core VIII of the Babcock & Wilcox (B&W) Spectral Shift Control Reactor (SSCR) critical experiment program was performed. The SSCR concept, moderated and cooled by a variable mixture of heavy and light water, envisaged changing of the thermal neutron spectrum during the operation to encourage breeding and to sustain the core criticality. Core VIII contained 2188 fuel rods with 93% enriched UO2-ThO2 fuel in a moderator mixture of heavy and light water. The criticality experiment and measurements of the thermal disadvantage factor were evaluated.
In the framework of the OECD/NEA International Reactor Physics Experiment (IRPHE) Project, an evaluation of core VIII of the Babcock and Wilcox (B and W) Spectral Shift Control Reactor (SSCR), critical experiment program was performed. The SSCR concept, moderated and cooled by a variable mixture of heavy and light water, envisaged changing of the thermal neutron spectrum during the operation to encourage breeding and to sustain the core criticality. Core VIII contained 2188 fuel rods with 93% enriched UO{sub 2}-ThO{sub 2} fuel in a moderator mixture of heavy and light water. The criticality experiment and measurements of the thermal disadvantage factor were evaluated. Benchmark criticality results using different cross-section libraries are reported. ENDF/B-VI.6 calculation was run using the S(α, β) model based on ENDF/B-VI.3 data while ENDF/B-VII.0 and ENDF/BVII.1 used an S(α, β) model based on ENDF/B-VII.0 data. JEFF calculations were run using the S(α, β) model based on JEFF 3.1.1 data except for the aluminum isotope, for which the S(α, β) model was missing. The maximum absolute deviation from the benchmark model was obtained using the JEFF-3.1.1 cross sections while closer results were obtained using ENDF/ B-VII.0 and ENDF/B-VII.1. Only ENDF/B-VII.1 and ENDF/B-VII.0 results are inside the 3σ uncertainty band (+2.8σ and 2.4σ, respectively), having deviations on the order of 300 pcm. The maximum deviation is -827 pcm (-6.1σ), using JEFF.3.1.1. Sample calculations of the TDF benchmark were also performed, studying the effects of the main nuclear data libraries. (authors)
Contrast variation small angle neutron scattering experiments reveal the nature of interactions between proteins and polymers in semidilute aqueous solution.
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A group of sulfonamides exhibiting antimicrobial activity was analyzed with the application of quantitative structure–activity/property relationships method. The purpose of this study was to show the common and differentiating characteristics of the analyzed chemical structures alike physicochemically as well as pharmacologically based on the quantum-chemical calculations both in vacuo and in the aquatic environment together with their microbiological activity and chromatographic retention data. The semiempirical and ab initio level of in silico molecular modeling was performed for calculations of statistically significant molecular descriptors to compare obtained results. The relationship between the structure and biological activity and physicochemical parameters data was able to class and describe analyzed molecules and the applied chemometric approaches (principal component analysis, factor analysis, and multiple regression analysis) revealed the influential features of the tested structures responsible for the antimicrobial activity.
Ridesharing has become an increasingly prevalent form of transportation. Although transportation network companies such as Uber and Lyft initially started as a personal rideshare service where individuals ride alone or with people they know, rideshare services have been expanded to pooled rideshare—a dynamic rideshare system where an individual rides with passengers they do not know. Despite the growth in rideshare services worldwide, the use of pooled rideshare in the U.S.A. is relatively low compared to other forms of transportation. A national U.S. survey (N = 5385) was conducted to investigate reasons why individuals are willing or unwilling to consider pooled rideshare. Exploratory and confirmatory factor analyses were performed, where the exploratory factor analysis suggests five factors, specifically,service experience,time/cost,traffic/environment,privacy, andsafety. Model fit indices of the confirmatory factor analysis verified that these five factors can represent the factors behind riders’ willingness to consider pooled rideshare. Furthermore, a binomial logistic regression was conducted to explore how the five factors influence riders’ willingness to consider pooled rideshare. The three factors that influence riders’ willingness to consider pooled rideshare wereservice experience(B = 1.05),traffic/environment(B = .38), andtime/cost(B = .26), while a lack ofprivacy(B = −1.46) can be a deterrent for pooled rideshare.Safetyis important for those who are both willing and unwilling to consider the use of pooled rideshare. Understanding these factors is important for the future of pooled rideshare services in the U.S.A.
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