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At least 19 records

Combining Flux Balance and Energy Balance Analysis for Large-Scale Metabolic Network: Biochemical Circuit Theory for Analysis of Large-Scale Metabolic Networks

Predicting behavior of large-scale biochemical metabolic networks represents one of the greatest challenges of bioinformatics and computational biology. Approaches, such as flux balance analysis (FBA), that account for the known stoichiometry of the reaction network while avoiding implementation of detailed reaction kinetics are perhaps the most promising tools for the analysis of large complex networks. As a step towards building a complete theory of biochemical circuit analysis, we introduce energy balance analysis (EBA), which compliments the FBA approach by introducing fundamental constraints based on the first and second laws of thermodynamics. Fluxes obtained with EBA are thermodynamically feasible and provide valuable insight into the activation and suppression of biochemical pathways.

Beard, Daniel A.↗

Net radiation, sensible and latent heat flux densities on slopes computed by the energy balance method

Energy balance components obtained over five grass-covered sloping surfaces near Manhattan, KS, using the Bowen ratio energy balance technique with the instruments mounted horizontally were compared with calculated values when the instruments were mounted parallel to the surfaces. Hourly values of the components changed when the instruments were parallel to the surfaces. The changes were larger at low solar angles (spring and fall) and on steeper slopes. An area average of daylight totals, assuming that all aspects were equally represented, changed only 0.1 percent on June 6 and 2.3 percent on October 11. The calculations, extended to steeper slopes, indicated small changes in the daylight totals for slopes of less than 10 deg.

Fritschen, Leo↗

Time-resolved characterization and energy balance analysis of implosion core in shock-ignition experiments at OMEGA

Time-resolved temperature and density conditions in the core of shock-ignition implosions have been determined for the first time. The diagnostic method relies on the observation, with a streaked crystal spectrometer, of the signature of an Ar tracer added to the deuterium gas fill. The data analysis confirms the importance of the shell attenuation effect previously noted on time-integrated spectroscopic measurements of thick-wall targets [R. Florido et al., Phys. Rev. E 83, 066408 (2011)]. This effect must be taken into account in order to obtain reliable results. The extracted temperature and density time-histories are representative of the state of the core during the implosion deceleration and burning phases. As a consequence of the ignitor shock launched by the sharp intensity spike at the end of the laser pulse, observed average core electron temperature and mass density reach T ~ 1100 eV and ρ ~ 2 g/cm 3 ; then temperature drops to T ~ 920 eV while density rises to ρ ~ 3.4 g/cm 3 about the time of peak compression. Compared to 1D hydrodynamic simulations, the experiment shows similar maximum temperatures and smaller densities. Simulations do not reproduce all observations. Differences are noted in the heating dynamics driven by the ignitor shock and the optical depth time-history of the compressed shell. Time-histories of core conditions extracted from spectroscopy show that the implosion can be interpreted as a two-stage polytropic process. Furthermore, an energy balance analysis of implosion core suggests an increase in total energy greater than what 1D hydrodynamic simulations predict. This new methodology can be implemented in other ICF experiments to look into implosion dynamics and help to understand the underlying physics.

70 PLASMA PHYSICS AND FUSION TECHNOLOGY↗

Energy balance and stability

The energy balance of the outer atmospheres of solarlike stars is discussed. The energy balance of open coronal regions is considered, discussing the construction and characteristics of models of such regions in some detail. In particular, the temperature as a function of height is considered, as are the damping length dependence of the global energy balance in the region between the base of the transition region and the critical point, and the effects of changing the amount of coronal heating, the stellar mass, and the stellar radius. Models of coronal loops are more briefly discussed. The chromosphere is then included in the discussion of the energy balance, and the connection between global energy balance and global thermal stability is addressed. The observed positive correlations between the chromospheric and coronal energy losses and the pressure of the transition region is qualitatively explained.

Hammer, R.↗

ISEE observations of magnetopause reconnection: The energy balance

The total energy balance for two events with the objective of obtaining check on the interpretation in terms of reconnection is examined. To within experimental uncertainties, the plasma and magnetic field data are consistent with reconnection. An enthalpy increase comparable to the kinetic energy increase occurs in the magnetopause. Thus substantial dissipation is present in the rotational discontinuity. An ion heat flow associated with a beam of reflected magnetosheath particles carried away some 20% of the total converted electromagnetic energy.

Paschmann, G.↗

ISEE observations of the magnetopause - Reconnection and the energy balance

The total energy balance for two events with the objective of obtaining check on the interpretation in terms of reconnection is examined. To within experimental uncertainties, the plasma and magnetic field data are consistent with reconnection. An enthalpy increase comparable to the kinetic energy increase occurs in the magnetopause. Thus substantial dissipation is present in the rotational discontinuity. An ion heat flow associated with a beam of reflected magnetosheath particles carried away some 20 percent of the total converted electromagnetic energy.

Paschmann, G.↗

The seasonal CO2 cycle on Mars - An application of an energy balance climate model

Energy balance climate models of the Budyko-Sellers variety are applied to the carbon-dioxide cycle on Mars. Recent data available from the Viking mission, in particular the seasonal pressure variations measured by Viking landers, are used to constrain the models. No set of parameters was found for which a one-dimensional model parameterized in terms of ground temperature gave an adequate fit to the observed pressure variations. A modified, two-dimensional model including the effects of dust storms and the polar hood reasonably reproduces the pressure curve, however. The implications of these results for Martian climate changes are discussed.

James, P. B.↗

DET/MPS - The GSFC Energy Balance Programs

Direct Energy Transfer (DET) and MultiMission Spacecraft Modular Power System (MPS) computer programs perform mathematical modeling and simulation to aid in design and analysis of DET and MPS spacecraft power system performance in order to determine energy balance of subsystem. DET spacecraft power system feeds output of solar photovoltaic array and nickel cadmium batteries directly to spacecraft bus. MPS system, Standard Power Regulator Unit (SPRU) utilized to operate array at array's peak power point. DET and MPS perform minute-by-minute simulation of performance of power system. Results of simulation focus mainly on output of solar array and characteristics of batteries. Both packages limited in terms of orbital mechanics, they have sufficient capability to calculate data on eclipses and performance of arrays for circular or near-circular orbits. DET and MPS written in FORTRAN-77 with some VAX FORTRAN-type extensions. Both available in three versions: GSC-13374, for DEC VAX-series computers running VMS. GSC-13443, for UNIX-based computers. GSC-13444, for Apple Macintosh computers.

Jagielski, J. M.↗

Elaboration of Energy Balance: A Model for the Brazilian States

The energy balance constitutes a powerful management instrument for government agencies, as it offers an overview of the energy situation of the country (or region) and serves as a guide for energy policies and monitoring of these policies. Although Brazil has published the national energy balance for more than half a century, the national publication does not adequately address energy statistics at the level of the states. This occurs either due to the lack of specific data or the absence of total disaggregation. Accordingly, the elaboration and implementation of public policies for the energy sector in the Brazilian states lack consistent energy statistics. Therefore, this paper aims to present a model for the Brazilian states to elaborate the energy balance. The proposed model consists of applying internationally referenced methodologies to develop a user-friendly software, which includes automatic energy unit conversions, different chart styles, high-level data organization, and Sankey diagrams. As a result, the software can be adopted by local governments as a tool to maintain the state energy balance publication periodically, and hence obtain the detailed information necessary to manage and formulate energy policies. The advantage of the software is that it can be operated by non-experts and the energy flow as well as the entire report can be generated automatically. The proposed software was successfully used to generate the energy balance of the Mato Grosso do Sul state.

29 ENERGY PLANNING, POLICY, AND ECONOMY↗

The Precession Index and a Nonlinear Energy Balance Climate Model

A simple nonlinear energy balance climate model yields a precession index-like term in the temperature. Despite its importance in the geologic record, the precession index e sin (Omega)S, where e is the Earth's orbital eccentricity and (Omega)S is the Sun's perigee in the geocentric frame, is not present in the insolation at the top of the atmosphere. Hence there is no one-for-one mapping of 23,000 and 19,000 year periodicities from the insolation to the paleoclimate record; a nonlinear climate model is needed to produce these long periods. A nonlinear energy balance climate model with radiative terms of form T n, where T is surface temperature and n less than 1, does produce e sin (omega)S terms in temperature; the e sin (omega)S terms are called Seversmith psychroterms. Without feedback mechanisms, the model achieves extreme values of 0.64 K at the maximum orbital eccentricity of 0.06, cooling one hemisphere while simultaneously warming the other; the hemisphere over which perihelion occurs is the cooler. In other words, the nonlinear energy balance model produces long-term cooling in the northern hemisphere when the Sun's perihelion is near northern summer solstice and long-term warming in the northern hemisphere when the aphelion is near northern summer solstice. (This behavior is similar to the inertialess gray body which radiates like T 4, but the amplitude is much lower for the energy balance model because of its thermal inertia.) This seemingly paradoxical behavior works against the standard Milankovitch model, which requires cool northern summers (Sun far from Earth in northern summer) to build up northern ice sheets, so that if the standard model is correct it must be more efficient than previously thought. Alternatively, the new mechanism could possibly be dominant and indicate southern hemisphere control of the northern ice sheets, wherein the southern oceans undergo a long-term cooling when the Sun is far from the Earth during northern summer. The cold water eventually flows north, cooling the northern hemisphere. This might explain why the northern oceans lag the southern ones when it comes to orbital forcing.

Rubincam, David↗

Surface Energy Balance System (SEBS) Instrument Handbook

A Surface Energy Balance System (SEBS) has been installed collocated with each deployed ECOR system at the Southern Great Plains (SGP), North Slope of Alaska (NSA), Tropical Western Pacific (TWP), ARM Mobile Facility 1 (AMF1), and ARM Mobile Facility 2 (AMF2). The surface energy balance system consists of upwelling and downwelling solar and infrared radiometers within one net radiometer, a wetness sensor, and soil measurements. The SEBS measurements allow the comparison of ECOR sensible and latent heat fluxes with the energy balance determined from the SEBS and provide information on wetting of the sensors for data quality purposes.

54 ENVIRONMENTAL SCIENCES↗

Meridional energy balance of Jupiter

The meridional energy balance of Jupiter is calculated from high spatial resolution observations by the Voyager 1 infrared spectrometer and radiometer. On a hemispheric scale Jupiter radiates thermal energy to space approximately uniform with latitude while solar energy absorption varies approximately as the solar angle. This implies internal adjustment to the solar energy with a larger contribution poleward of + or - 45 deg than in the equatorial zone. The internal flux is modulated by the major visible features of the zone and belt system but, unlike the hemispheric scale where increased internal flux is correlated with decreased solar absorption, on smaller scales the inverse occurs. The energy balance is very likely to be controlled by dynamics, but the relative influence of the upper atmosphere and the interior is not yet clear.

Pirraglia, J. A.↗

Modeling energy balance while correcting for measurement error via free knot splines

Measurements of energy balance components (energy intake, energy expenditure, changes in energy stores) are often plagued with measurement error. Doubly-labeled water can measure energy intake (EI) with negligible error, but is expensive and cumbersome. An alternative approach that is gaining popularity is to use the energy balance principle, by measuring energy expenditure (EE) and change in energy stores (ES) and then back-calculate EI. Gold standard methods for EE and ES exist and are known to give accurate measurements, albeit at a high cost. We propose a joint statistical model to assess the measurement error in cheaper, non-intrusive measures of EE and ES. We let the unknown true EE and ES for individuals be latent variables, and model them using a bivariate distribution. We try both a bivariate Normal as well as a Dirichlet Process Mixture Model, and compare the results via simulation. Our approach, is the first to account for the dependencies that exist in individuals’ daily EE and ES. We employ semiparametric regression with free knot splines for measurements with error, and linear components for error free covariates. We adopt a Bayesian approach to estimation and inference and use Reversible Jump Markov Chain Monte Carlo to generate draws from the posterior distribution. Based on the semiparameteric regression, we develop a calibration equation that adjusts a cheaper, less reliable estimate, closer to the true value. Along with this calibrated value, our method also gives credible intervals to assess uncertainty. A simulation study shows our calibration helps produce a more accurate estimate. Furthermore, our approach compares favorably in terms of prediction to other commonly used models.

60 APPLIED LIFE SCIENCES↗