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At least 19 records

Combining Flux Balance and Energy Balance Analysis for Large-Scale Metabolic Network: Biochemical Circuit Theory for Analysis of Large-Scale Metabolic Networks

Predicting behavior of large-scale biochemical metabolic networks represents one of the greatest challenges of bioinformatics and computational biology. Approaches, such as flux balance analysis (FBA), that account for the known stoichiometry of the reaction network while avoiding implementation of detailed reaction kinetics are perhaps the most promising tools for the analysis of large complex networks. As a step towards building a complete theory of biochemical circuit analysis, we introduce energy balance analysis (EBA), which compliments the FBA approach by introducing fundamental constraints based on the first and second laws of thermodynamics. Fluxes obtained with EBA are thermodynamically feasible and provide valuable insight into the activation and suppression of biochemical pathways.

Beard, Daniel A.↗

Net radiation, sensible and latent heat flux densities on slopes computed by the energy balance method

Energy balance components obtained over five grass-covered sloping surfaces near Manhattan, KS, using the Bowen ratio energy balance technique with the instruments mounted horizontally were compared with calculated values when the instruments were mounted parallel to the surfaces. Hourly values of the components changed when the instruments were parallel to the surfaces. The changes were larger at low solar angles (spring and fall) and on steeper slopes. An area average of daylight totals, assuming that all aspects were equally represented, changed only 0.1 percent on June 6 and 2.3 percent on October 11. The calculations, extended to steeper slopes, indicated small changes in the daylight totals for slopes of less than 10 deg.

Fritschen, Leo↗

Energy balance and stability

The energy balance of the outer atmospheres of solarlike stars is discussed. The energy balance of open coronal regions is considered, discussing the construction and characteristics of models of such regions in some detail. In particular, the temperature as a function of height is considered, as are the damping length dependence of the global energy balance in the region between the base of the transition region and the critical point, and the effects of changing the amount of coronal heating, the stellar mass, and the stellar radius. Models of coronal loops are more briefly discussed. The chromosphere is then included in the discussion of the energy balance, and the connection between global energy balance and global thermal stability is addressed. The observed positive correlations between the chromospheric and coronal energy losses and the pressure of the transition region is qualitatively explained.

Hammer, R.↗

ISEE observations of magnetopause reconnection: The energy balance

The total energy balance for two events with the objective of obtaining check on the interpretation in terms of reconnection is examined. To within experimental uncertainties, the plasma and magnetic field data are consistent with reconnection. An enthalpy increase comparable to the kinetic energy increase occurs in the magnetopause. Thus substantial dissipation is present in the rotational discontinuity. An ion heat flow associated with a beam of reflected magnetosheath particles carried away some 20% of the total converted electromagnetic energy.

Paschmann, G.↗

ISEE observations of the magnetopause - Reconnection and the energy balance

The total energy balance for two events with the objective of obtaining check on the interpretation in terms of reconnection is examined. To within experimental uncertainties, the plasma and magnetic field data are consistent with reconnection. An enthalpy increase comparable to the kinetic energy increase occurs in the magnetopause. Thus substantial dissipation is present in the rotational discontinuity. An ion heat flow associated with a beam of reflected magnetosheath particles carried away some 20 percent of the total converted electromagnetic energy.

Paschmann, G.↗

The seasonal CO2 cycle on Mars - An application of an energy balance climate model

Energy balance climate models of the Budyko-Sellers variety are applied to the carbon-dioxide cycle on Mars. Recent data available from the Viking mission, in particular the seasonal pressure variations measured by Viking landers, are used to constrain the models. No set of parameters was found for which a one-dimensional model parameterized in terms of ground temperature gave an adequate fit to the observed pressure variations. A modified, two-dimensional model including the effects of dust storms and the polar hood reasonably reproduces the pressure curve, however. The implications of these results for Martian climate changes are discussed.

James, P. B.↗

DET/MPS - The GSFC Energy Balance Programs

Direct Energy Transfer (DET) and MultiMission Spacecraft Modular Power System (MPS) computer programs perform mathematical modeling and simulation to aid in design and analysis of DET and MPS spacecraft power system performance in order to determine energy balance of subsystem. DET spacecraft power system feeds output of solar photovoltaic array and nickel cadmium batteries directly to spacecraft bus. MPS system, Standard Power Regulator Unit (SPRU) utilized to operate array at array's peak power point. DET and MPS perform minute-by-minute simulation of performance of power system. Results of simulation focus mainly on output of solar array and characteristics of batteries. Both packages limited in terms of orbital mechanics, they have sufficient capability to calculate data on eclipses and performance of arrays for circular or near-circular orbits. DET and MPS written in FORTRAN-77 with some VAX FORTRAN-type extensions. Both available in three versions: GSC-13374, for DEC VAX-series computers running VMS. GSC-13443, for UNIX-based computers. GSC-13444, for Apple Macintosh computers.

Jagielski, J. M.↗

The Precession Index and a Nonlinear Energy Balance Climate Model

A simple nonlinear energy balance climate model yields a precession index-like term in the temperature. Despite its importance in the geologic record, the precession index e sin (Omega)S, where e is the Earth's orbital eccentricity and (Omega)S is the Sun's perigee in the geocentric frame, is not present in the insolation at the top of the atmosphere. Hence there is no one-for-one mapping of 23,000 and 19,000 year periodicities from the insolation to the paleoclimate record; a nonlinear climate model is needed to produce these long periods. A nonlinear energy balance climate model with radiative terms of form T n, where T is surface temperature and n less than 1, does produce e sin (omega)S terms in temperature; the e sin (omega)S terms are called Seversmith psychroterms. Without feedback mechanisms, the model achieves extreme values of 0.64 K at the maximum orbital eccentricity of 0.06, cooling one hemisphere while simultaneously warming the other; the hemisphere over which perihelion occurs is the cooler. In other words, the nonlinear energy balance model produces long-term cooling in the northern hemisphere when the Sun's perihelion is near northern summer solstice and long-term warming in the northern hemisphere when the aphelion is near northern summer solstice. (This behavior is similar to the inertialess gray body which radiates like T 4, but the amplitude is much lower for the energy balance model because of its thermal inertia.) This seemingly paradoxical behavior works against the standard Milankovitch model, which requires cool northern summers (Sun far from Earth in northern summer) to build up northern ice sheets, so that if the standard model is correct it must be more efficient than previously thought. Alternatively, the new mechanism could possibly be dominant and indicate southern hemisphere control of the northern ice sheets, wherein the southern oceans undergo a long-term cooling when the Sun is far from the Earth during northern summer. The cold water eventually flows north, cooling the northern hemisphere. This might explain why the northern oceans lag the southern ones when it comes to orbital forcing.

Rubincam, David↗

Surface Energy Balance System (SEBS) Instrument Handbook

A Surface Energy Balance System (SEBS) has been installed collocated with each deployed ECOR system at the Southern Great Plains (SGP), North Slope of Alaska (NSA), Tropical Western Pacific (TWP), ARM Mobile Facility 1 (AMF1), and ARM Mobile Facility 2 (AMF2). The surface energy balance system consists of upwelling and downwelling solar and infrared radiometers within one net radiometer, a wetness sensor, and soil measurements. The SEBS measurements allow the comparison of ECOR sensible and latent heat fluxes with the energy balance determined from the SEBS and provide information on wetting of the sensors for data quality purposes.

54 ENVIRONMENTAL SCIENCES↗

Meridional energy balance of Jupiter

The meridional energy balance of Jupiter is calculated from high spatial resolution observations by the Voyager 1 infrared spectrometer and radiometer. On a hemispheric scale Jupiter radiates thermal energy to space approximately uniform with latitude while solar energy absorption varies approximately as the solar angle. This implies internal adjustment to the solar energy with a larger contribution poleward of + or - 45 deg than in the equatorial zone. The internal flux is modulated by the major visible features of the zone and belt system but, unlike the hemispheric scale where increased internal flux is correlated with decreased solar absorption, on smaller scales the inverse occurs. The energy balance is very likely to be controlled by dynamics, but the relative influence of the upper atmosphere and the interior is not yet clear.

Pirraglia, J. A.↗

Energy balance in the solar transition region. I - Hydrostatic thermal models with ambipolar diffusion

The energy balance in the lower transition region is analyzed by constructing theoretical models which satisfy the energy balance constraint. The energy balance is achieved by balancing the radiative losses and the energy flowing downward from the corona. This energy flow is mainly in two forms: conductive heat flow and hydrogen ionization energy flow due to ambipolar diffusion. Hydrostatic equilibrium is assumed, and, in a first calculation, local mechanical heating and Joule heating are ignored. In a second model, some mechanical heating compatible with chromospheric energy-balance calculations is introduced. The models are computed for a partial non-LTE approach in which radiation departs strongly from LTE but particles depart from Maxwellian distributions only to first order. The results, which apply to cases where the magnetic field is either absent, or uniform and vertical, are compared with the observed Lyman lines and continuum from the average quiet sun. The approximate agreement suggests that this type of model can roughly explain the observed intensities in a physically meaningful way, assuming only a few free parameters specified as chromospheric boundary conditions.

Fontenla, J. M.↗

Assessing the Performance of the South American Land Data Assimilation System Version 2 (SALDAS-2) Energy Balance across Diverse Biomes

Understanding the exchange of energy between the surface and the atmosphere is important in view of the climate scenario. However, it becomes a challenging task due to a sparse network of observations. This study aims to improve the energy balance estimates for the Amazon, Cerrado, and Pampa biomes located in South America using the radiation and precipitation forcing obtained from the Clouds and the Earth’s Radiant Energy System (CERES) and the precipitation CPTEC/MERGE datasets. We employed three surface models—Noah-MP, Community Land Model (CLSM), and Integrated Biosphere Simulator (IBIS)—and conducted modeling experiments, termed South America Land Data Assimilation System (SALDAS-2). The results showed that SALDAS-2 radiation estimates had the smallest errors. Moreover, SALDAS-2 precipitation estimates were better than the Global Land Data Assimilation System (GLDAS) in the Cerrado (MBE = −0.16) and Pampa (MBE = −0.19). Noah-MP presented improvements compared with CLSM and IBIS in 100% of towers located in the Amazon. CLSM tends to overestimate the latent heat flux and underestimate the sensible heat flux in the Amazon. Noah-MP and Ensemble outperformed GLDAS in terms latent and sensible heat fluxes. The potential of SALDAS-2 should be emphasized to provide more accurate estimates of surface energy balance.

modeling↗

Surface Energy Balance System (SEBS) Instrument Handbook

A surface energy balance system (SEBS) has been installed collocated with each deployed eddy correlation flux measurement system (ECOR) after 2010 at the U.S. Department of Energy (DOE) Atmospheric Radiation Measurement (ARM) User Facility Southern Great Plains (SGP) observatory, North Slope of Alaska (NSA) observatory, Eastern North Atlantic (ENA) observatory, and the first, second, and third ARM Mobile Facilities (AMF1, AMF2, AMF3). A SEBS was also deployed at the Tropical Western Pacific (TWP) site, before it was decommissioned. Data from these sites, including the retired TWP, are available in the ARM Data Center. The SEBS consists of upwelling and downwelling solar and infrared radiometers within one net radiometer, a wetness sensor, and soil temperature, soil moisture, and soil heat flow measurements. The SEBS measurements allow the comparison of ECOR sensible and latent heat fluxes with the energy balance determined from the SEBS and provide information on wetting of the sensors for data quality purposes.

54 ENVIRONMENTAL SCIENCES↗

Energy balance in coronal funnels

The energy balance in magnetic flux tubes is examined semianalytically for the case in which thermal conduction balances radiation or in which enthalpy transport occurs. Different values are considered for areal constriction, shape, length, and maximum temperature. The overall energy budget of the solar corona is not significantly affected by magnetic constriction. A bowl-shaped funnel with a constriction factor of 4 describes the empirical differential-emission measure for log-T values between approximately 5.3 and 6.0. Loop-scaling relationships are derived for the full range of models to illustrate the dependence of the constant of proportionality on the properties of the magnetic constriction. Constriction can reduce the total energy requirement of the funnel by a factor of 5 and not affect the differential emission in flow-dominated models.

Rabin, Douglas↗

The energy balance of the nighttime thermosphere

Energy balance considerations for the thermosphere are affected by the uncertainty of the solar EUV flux. The problem is simplified by investigating only the nighttime thermosphere. Vapor trail measurements provide wind data at the sunset and sunrise terminators and near the polar cap boundary. Temperature and density profiles were obtained from incoherent scatter and Ogo 6 measurements. Based on the available data the energy losses are estimated to be 8 times 10 to the 10th W due to downward conduction at 120 km and 3 times 10 to the 10th W due to infrared radiation. The energy carried by the measured winds from the polar cap is found to be 4.6 times 10 to the 10th W and that transported across the mid- and low-latitude terminators, 7.6 to 11 times 10 to the 10th W. The greatest uncertainty in this analysis was in the estimates of the differences in the densities and temperatures in the lower thermosphere at the dawn and dusk terminators. Because of the large rotational velocity of the earth, small differences in these parameters correspond to large amounts of energy transported to the night hemisphere.

Glenar, D. A.↗

Assessment of Global Annual Atmospheric Energy Balance from Satellite Observations

Global atmospheric energy balance is one of the fundamental processes for the earth's climate system. This study uses currently available satellite data sets of radiative energy at the top of atmosphere (TOA) and surface and latent and sensible heat over oceans for the year 2000 to assess the global annual energy budget. Over land, surface radiation data are used to constrain assimilated results and to force the radiation, turbulent heat, and heat storage into balance due to a lack of observation-based turbulent heat flux estimations. Global annual means of the TOA net radiation obtained from both direct measurements and calculations are close to zero. The net radiative energy fluxes into the surface and the surface latent heat transported into the atmosphere are about 113 and 86 Watts per square meter, respectively. The estimated atmospheric and surface heat imbalances are about -8 ~ 9 Watts per square meter, values that are within the uncertainties of surface radiation and sea surface turbulent flux estimates and likely systematic biases in the analyzed observations. The potential significant additional absorption of solar radiation within the atmosphere suggested by previous studies does not appear to be required to balance the energy budget the spurious heat imbalances in the current data are much smaller (about half) than those obtained previously and debated at about a decade ago. Progress in surface radiation and oceanic turbulent heat flux estimations from satellite measurements significantly reduces the bias errors in the observed global energy budgets of the climate system.

Lin, Bing↗