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At least 19 records

Researcher Views on Water Data Accessibility, Usability, and Dissemination

Ultimately, the challenges that researchers face with finding, accessing, using, and disseminating water data affect their ability to do mission critical research for DOE and other sponsors. We interviewed PNNL researchers who support DOE’s Water Power Technologies Office and summarize their views on issues pertaining to data access, use, and dissemination. We also take a closer look at approaches to disseminating data to help inform WPTO and lab researcher decisions about incorporating data dissemination into future projects.

13 HYDRO ENERGY↗

Coccidioidomycosis Osteoarticular Dissemination

Valley fever or coccidioidomycosis is a pulmonary infection caused by species of Coccidioides fungi that are endemic to California and Arizona. Skeletal coccidioidomycosis accounts for about half of disseminated infections, with the vertebral spine being the preferred site of dissemination. Most cases of skeletal coccidioidomycosis progress to bone destruction or spread to adjacent structures such as joints, tendons, and other soft tissues, causing significant pain and restricting mobility. Manifestations of such cases are usually nonspecific, making diagnosis very challenging, especially in non-endemic areas. The lack of basic knowledge and research data on the mechanisms defining susceptibility to extrapulmonary infection, especially when it involves bones and joints, prompted us to survey available clinical and animal data to establish specific research questions that remain to be investigated. In this review, we explore published literature reviews, case reports, and case series on the dissemination of coccidioidomycosis to bones and/or joints. We highlight key differential features with other conditions and opportunities for mechanistic and basic research studies that can help develop novel diagnostic, prognostic, and treatment strategies.

59 BASIC BIOLOGICAL SCIENCES↗

Host and nonhost bacteria support bacteriophage dissemination along mycelia and abiotic dispersal networks

Abstract Bacteriophages play a crucial role in shaping bacterial communities, yet the mechanisms by which nonmotile bacteriophages interact with their hosts remain poorly understood. This knowledge gap is especially pronounced in structured environments like soil, where spatial constraints and air-filled zones hinder aqueous diffusion. In soil, hyphae of filamentous microorganisms form a network of ‘fungal highways’ (FHs) that facilitate the dispersal of other microorganisms. We propose that FHs also promote bacteriophage dissemination. Viral particles can diffuse in liquid films surrounding hyphae or be transported by infectable (host) or uninfectable (nonhost) bacterial carriers coexisting on FH networks. To test this, two bacteriophages that infect Pseudomonas putida DSM291 (host) but not KT2440 (nonhost) were used. In the absence of carriers, bacteriophages showed limited diffusion on 3D-printed abiotic networks, but diffusion was significantly improved in Pythium ultimum-formed FHs when the number of connecting hyphae exceeded 20. Transport by both host and nonhost carriers enhanced bacteriophage dissemination. Host carriers were five times more effective in transporting bacteriophages, particularly in FHs with over 30 connecting hyphae. This study enhances our understanding of bacteriophage dissemination in nonsaturated environments like soils, highlighting the importance of biotic networks and bacterial hosts in facilitating this process.

Périat, Claire (ORCID:000000020825625X)↗

In silico analyses of diversity and dissemination of antimicrobial resistance genes and mobile genetics elements, for plasmids of enteric pathogens

The antimicrobial resistance (AMR) mobilome plays a key role in the dissemination of resistance genes encoded by mobile genetics elements (MGEs) including plasmids, transposons (Tns), and insertion sequences (ISs). These MGEs contribute to the dissemination of multidrug resistance (MDR) in enteric bacterial pathogens which have been considered as a global public health risk. To further understand the diversity and distribution of AMR genes and MGEs across different plasmid types, we utilized multiple sequence-based computational approaches to evaluate AMR-associated plasmid genetics. A collection of 1,309 complete plasmid sequences from Gammaproteobacterial species, including 100 plasmids from each of the following 14 incompatibility (Inc) types: A/C, BO, FIA, FIB, FIC, FIIA, HI1, HI2, I1, K, M, N, P except W, where only 9 sequences were available, was extracted from the National Center for Biotechnology Information (NCBI) GenBank database using BLAST tools. The extracted FASTA files were analyzed using the AMRFinderPlus web-based tools to detect antimicrobial, disinfectant, biocide, and heavy metal resistance genes and ISFinder to identify IS/Tn MGEs within the plasmid sequences. In silico prediction based on plasmid replicon types showed that the resistance genes were diverse among plasmids, yet multiple genes were widely distributed across the plasmids from enteric bacterial species. These findings provide insights into the diversity of resistance genes and that MGEs mediate potential transmission of these genes across multiple plasmid replicon types. This notion was supported by the observation that many IS/Tn MGEs and resistance genes known to be associated with them were common across multiple different plasmid types. Our results provide critical insights about how the diverse population of resistance genes that are carried by the different plasmid types can allow for the dissemination of AMR across enteric bacteria. The results also highlight the value of computational-based approaches and in silico analyses for the assessment of AMR and MGEs, which are important elements of molecular epidemiology and public health outcomes.

59 BASIC BIOLOGICAL SCIENCES↗

Assessing complexity and dynamics in epidemics: geographical barriers and facilitators of foot-and-mouth disease dissemination

Introduction: Physical and non-physical processes that occur in nature may influence biological processes, such as dissemination of infectious diseases. However, such processes may be hard to detect when they are complex systems. Because complexity is a dynamic and non-linear interaction among numerous elements and structural levels in which specific effects are not necessarily linked to any one specific element, cause-effect connections are rarely or poorly observed. Methods: To test this hypothesis, the complex and dynamic properties of geo-biological data were explored with high-resolution epidemiological data collected in the 2001 Uruguayan foot-and-mouth disease (FMD) epizootic that mainly affected cattle. County-level data on cases, farm density, road density, river density, and the ratio of road (or river) length/county perimeter were analyzed with an open-ended procedure that identified geographical clustering in the first 11 epidemic weeks. Two questions were asked: (i) do geo-referenced epidemiologic data display complex properties? and (ii) can such properties facilitate or prevent disease dissemination? Results: Emergent patterns were detected when complex data structures were analyzed, which were not observed when variables were assessed individually. Complex properties–including data circularity–were demonstrated. The emergent patterns helped identify 11 counties as ‘disseminators’ or ‘facilitators’ (F) and 264 counties as ‘barriers’ (B) of epidemic spread. In the early epidemic phase, F and B counties differed in terms of road density and FMD case density. Focusing on non-biological, geographical data, a second analysis indicated that complex relationships may identify B-like counties even before epidemics occur. Discussion: Geographical barriers and/or promoters of disease dispersal may precede the introduction of emerging pathogens. If corroborated, the analysis of geo-referenced complexity may support anticipatory epidemiological policies.

60 APPLIED LIFE SCIENCES↗

Precise time dissemination via portable atomic clocks

The most precise operational method of time dissemination over long distances presently available to the Precise Time and Time Interval (PTTI) community of users is by means of portable atomic clocks. The Global Positioning System (GPS), the latest system showing promise of replacing portable clocks for global PTTI dissemination, was evaluated. Although GPS has the technical capability of providing superior world-wide dissemination, the question of present cost and future accessibility may require a continued reliance on portable clocks for a number of years. For these reasons a study of portable clock operations as they are carried out today was made. The portable clock system that was utilized by the U.S. Naval Observatory (NAVOBSY) in the global synchronization of clocks over the past 17 years is described and the concepts on which it is based are explained. Some of its capabilities and limitations are also discussed.

Putkovich, K.↗

Airborne Thermal Infrared Multispectral Scanner (TIMS) images over disseminated gold deposits, Osgood Mountains, Humboldt County, Nevada

The U.S. Geological Survey (USGS) acquired airborne Thermal Infrared Multispectral Scanner (TIMS) images over several disseminated gold deposits in northern Nevada in 1983. The aerial surveys were flown to determine whether TIMS data could depict jasperoids (siliceous replacement bodies) associated with the gold deposits. The TIMS data were collected over the Pinson and Getchell Mines in the Osgood Mountains, the Carlin, Maggie Creek, Bootstrap, and other mines in the Tuscarora Mountains, and the Jerritt Canyon Mine in the Independence Mountains. The TIMS data seem to be a useful supplement to conventional geochemical exploration for disseminated gold deposits in the western United States. Siliceous outcrops are readily separable in the TIMS image from other types of host rocks. Different forms of silicification are not readily separable, yet, due to limitations of spatial resolution and spectral dynamic range. Features associated with the disseminated gold deposits, such as the large intrusive bodies and fault structures, are also resolvable on TIMS data. Inclusion of high-resolution thermal inertia data would be a useful supplement to the TIMS data.

Krohn, M. Dennis↗

The future of time and frequency dissemination

I will try to extrapolate the changes in the dissemination of time and frequency information that have taken place during the last 25 years to predict the future developments both in the methods of disseminating time and frequency and in the kinds of customers we will be asked to serve. Two important developments are likely to play pivotal roles in driving the evolution of dissemination. The first is the commercial availability of very high quality clocks -- devices whose performance may eventually rival that of the current generation of primary frequency standards. The widespread use of these devices may blur the traditional distinction between client and server, and may replace it with a more symmetrical interchange of data among peers. The second is the increasing demand for digital time and frequency information driven by the increasing sophistication of everything from traffic lights to electric power meters. The needs of these individual users may not tax the state of the art of primary frequency standards in principle, but their large numbers and wide geographical distribution present a technological challenge that is difficult to meet at a reasonable price using existing methods. Some of these problems may be solved (or at least addressed) using developments in communications and consumer electronics such as the increasing use of fiber-optic telephone circuits and the increasing bandwidth and sophistication of the cable network used to transmit television pictures. To be useful, these advances in hardware must stimulate parallel advances in software algorithms and methods. These advances are more difficult to predict with great confidence, but the developments of the last few years will be examined to provide some indications of the future.

Levine, Judah↗

A strategy for electronic dissemination of NASA Langley technical publications

To demonstrate NASA Langley Research Center's relevance and to transfer technology to external customers in a timely and efficient manner, Langley has formed a working group to study and recommend a course of action for the electronic dissemination of technical reports (EDTR). The working group identified electronic report requirements (e.g., accessibility, file format, search requirements) of customers in U.S. industry through numerous site visits and personal contacts. Internal surveys were also used to determine commonalities in document preparation methods. From these surveys, a set of requirements for an electronic dissemination system was developed. Two candidate systems were identified and evaluated against the set of requirements: the Full-Text Electronic Documents System (FEDS), which is a full-text retrieval system based on the commercial document management package Interleaf, and the Langley Technical Report Server (LTRS), which is a Langley-developed system based on the publicly available World Wide Web (WWW) software system. Factors that led to the selection of LTRS as the vehicle for electronic dissemination included searching and viewing capability, current system operability, and client software availability for multiple platforms at no cost to industry. This report includes the survey results, evaluations, a description of the LTRS architecture, recommended policy statement, and suggestions for future implementations.

Roper, Donna G.↗

U.S. Spacesuit Knowledge Capture – Creation, Curation, and Dissemination

The U.S. spacesuit is a special system that has intrigued and fascinated the world since Neil Armstrong set foot on the Moon in 1969. With over 50 years since that momentous achievement, NASA is planning to land the first woman and next man on the Moon in the near future. This goal begets the need to build a new spacesuit, a spacesuit created from the legacy knowledge of the Extravehicular Mobility Unit (EMU), combined with knowledge gained from technology development over the decades. As NASA transitions to its new horizon, the U.S. Spacesuit Knowledge Capture (SKC) Program is poised to help. The SKC Program’s primary function has been to capture, curate, and disseminate spacesuit-related knowledge among scientists, engineers, and technicians. The SKC Program was created in 2007 to capture knowledge primarily from spacesuit subject-matter experts (SMEs) who were retiring from NASA. These SMEs had 30 to 50 years of spacesuit knowledge. Over the years, the SKC Program has evolved and expanded its scope with a current focus on complementing the buildup of the Exploration EMU (xEMU) at the Johnson Space Center. As part of this focus, the SKC Program recently teamed with the xEMU Community of Practice (CoP) for knowledge sharing. The xEMU CoP provides a forum where early career engineers, professionals new to human spaceflight, and the xEMU community can come together regularly to seek guidance, share knowledge, meet their peers, discover resources, and ask questions. The CoP created an environment where the knowledge can be easily and routinely captured and recorded. The recorded events are archived and curated in an SKC Program library and disseminated as appropriate. This paper details the roles that the SKC Program and CoP play in the xEMU buildup, along with the navigation of the creation, curation, and dissemination processes.

Cinda Chullen↗

Dissemination of Global Flood Severity and Surface Water Mapping using Remote Sensing Data to Global Stakeholders

Flooding is a natural event that occurs frequently with high severity worldwide, responsible for significant societal and economic impacts. Disaster managers face significant challenges managing essential information for preparedness, response, and recovery efforts. The development of an open access, global flood alerting system for effective identification of flood impacted areas, classification of potential impacts, and the formulation of effective emergency response measures requires the incorporation of a wide variety of flood models and remote sensing data sources from multiple platforms. NASA is currently funding projects focused on flood forecasting, post-event flood mapping, flood depth estimation and pre-event flood severity estimation using Earth observation (EO) datasets and derived flood products. A new initiative in the Disasters Program is underway to disseminate flood products from different hydrologic models and sensors to global stakeholders via Pacific Disaster Center’s DisasterAWARE®, NASA’s Disasters Mapping Portal and potentially other mechanisms. This initiative focuses on improving response capacity and use of EO products in near real-time by a broader community for resource planning in case of extreme events. As part of this initiative, we have deployed Model of Models (MoM) – an open-source ensemble approach, that integrates outputs from hydrologic models and EO data from optical imagery to assess flood severity daily at sub-watershed level globally. The MoM output is integrated with the incident event system of DisasterAWARE to generate flood severity risk and flood impact boundaries, which are disseminated via the DisasterAWARE platform to different stakeholders globally for decision-making and response efforts. The next step will focus on using MoM outputs to estimate flood depth and extent mapping using high-resolution Synthetic Aperture Radar imagery, impact assessment using optical imagery and population datasets, and damage estimation using critical infrastructure datasets, which would be disseminated via DisasterAWARE to decision-makers, emergency managers and first responders around the world.

flood↗

Dissemination of Global Flood Information Through Nasa Disasters Program Global Initiative for Flood Forecasting and Alerting (GIFFT)

The Global Initiative for Flood Forecasting and Alerting (GIFFT) is an initiative to disseminate flood products from different sensors to global stakeholders via the Pacific Disaster Center’s (PDC) DisasterAWARE®, the NASA Disasters Mapping Portal and potentially other mechanisms. GIFFT will also generate an integrated product(s) using ensembled hydrologic models and Earth observation derived flood outputs to stakeholders globally. This initiative combines the results of several Disasters Program funded projects that focus on flood forecasting, flood severity estimation, post-event flood mapping, flooddepth estimation and resulting flood severity using remote sensing-based flood information derived from SAR and optical imagery. PDC’s DisasterAWARE platform is a global multi-hazard alerting platform that currently incorporatesModel of Models (MoM) outputs as flood “incidents,” visually depicting potential floods in the context ofpopulation and infrastructure that may become affected. Automated procedures are being developed tocategorize MoM outputs as DisasterAWARE “hazards,” allowing for their dissemination to users alongwith other flood products that assess potential impacts. PDC’s stakeholders include UN, DoD, FEMA andtheir equivalents around the world. Additionally, the DisasterALERT mobile platform has 2 million usersworldwide and is a fully functional and sustained platform used to disseminate alerts and analyticalproducts for 18 different hazard types. GIFFT has incorporated HydroSAR products that will bedistributed via DisasterAWARE.

remote sensing↗

Dissemination of blaNDM-5 and mcr-8.1 in carbapenem-resistant Klebsiella pneumoniae and Klebsiella quasipneumoniae in an animal breeding area in Eastern China

Animal farms have become one of the most important reservoirs of carbapenem-resistant Klebsiella spp. (CRK) owing to the wide usage of veterinary antibiotics. “One Health”-studies observing animals, the environment, and humans are necessary to understand the dissemination of CRK in animal breeding areas. Based on the concept of “One-Health,” 263 samples of animal feces, wastewater, well water, and human feces from 60 livestock and poultry farms in Shandong province, China were screened for CRK. Five carbapenem-resistant Klebsiella pneumoniae (CRKP) and three carbapenem-resistant Klebsiella quasipneumoniae (CRKQ) strains were isolated from animal feces, human feces, and well water. The eight strains were characterized by antimicrobial susceptibility testing, plasmid conjugation assays, whole-genome sequencing, and bioinformatics analysis. All strains carried the carbapenemase-encoding gene bla NDM-5 , which was flanked by the same core genetic structure (IS 5 - bla NDM-5 - ble MBL - trpF - dsbD -IS 26 -IS Kox3 ) and was located on highly related conjugative IncX3 plasmids. The colistin resistance gene mcr-8.1 was carried by three CRKP and located on self-transmissible IncFII(K)/IncFIA(HI1) and IncFII(pKP91)/IncFIA(HI1) plasmids. The genetic context of mcr-8.1 consisted of IS 903 - orf - mcr-8.1-copR-baeS-dgkA - orf -IS 903 in three strains. Single nucleotide polymorphism (SNP) analysis confirmed the clonal spread of CRKP carrying- bla NDM-5 and mcr-8.1 between two human workers in the same chicken farm. Additionally, the SNP analysis showed clonal expansion of CRKP and CRKQ strains from well water in different farms, and the clonal CRKP was clonally related to isolates from animal farms and a wastewater treatment plant collected in other studies in the same province. These findings suggest that CRKP and CRKQ are capable of disseminating via horizontal gene transfer and clonal expansion and may pose a significant threat to public health unless preventative measures are taken.

Yang, Chengxia↗

User data dissemination concepts for earth resources: Executive summary

The impact of the future capabilities of earth-resources data sensors (both satellite and airborne) and their requirements on the data dissemination network were investigated and optimum ways of configuring this network were determined. The scope of this study was limited to the continental U.S.A. (including Alaska) and to the 1985-1995 time period. Some of the conclusions and recommendations reached were: (1) Data from satellites in sun-synchronous polar orbits (700-920 km) will generate most of the earth-resources data in the specified time period. (2) Data from aircraft and shuttle sorties cannot be readily integrated in a data-dissemination network unless already preprocessed in a digitized form to a standard geometric coordinate system. (3) Data transmission between readout stations and central preprocessing facilities, and between processing facilities and user facilities are most economically performed by domestic communication satellites. (4) The effect of the following factors should be studied: cloud cover, expanded coverage, pricing strategies, multidiscipline missions.

Davies, R.↗

Dissemination, redissemination and fiber life

The technical background of dissemination of carbon fibers as well as the possibility of redissemination and fiber life are outlined. Plume spread and weather, measures of pollution and of damage potential, and parameters controlling dissemination patterns are among the topics discussed. It is shown that the redissemination rate off hard surfaces decreases with time and that fiber length decreases with time. Redissemination from vegetated land is shown to be insignificant.

Eiber, W.↗

Time code dissemination experiment via the SIRIO-1 VHF transponder

An experiment to evaluate the possibility of disseminating a time code via the SIRIO-1 satellite, by using the onboard VHF repeater is described. The precision in the synchronization of remote clocks was expected to be of the order of 0.1 to 1 ms. The RF carrier was in the VHF band, so that low cost receivers could be used and then a broader class of users could be served. An already existing repeater, even if not designed specifically for communications could be utilized; the operation of this repeater was not intended to affect any other function of the spacecraft (both the SHF repeater and the VHF telemetry link were active during the time code dissemination via the VHF transponder).

Detoma, E.↗

Precise time dissemination and applications development on the Bonneville Power Administration system

The Bonneville Power Administration (BPA) uses IRIG-B transmitted over microwave as its primary system time dissemination. Problems with accuracy and reliability have led to ongoing research into better methods. BPA has also developed and deployed a unique fault locator which uses precise clocks synchronized by a pulse over microwaves. It automatically transmits the data to a central computer for analysis. A proposed system could combine fault location timing and time dissemination into a Global Position System (GPS) timing receiver and close the verification loop through a master station at the Dittmer Control Center. Such a system would have many advantages, including lower cost, higher reliability, and wider industry support. Test results indicate the GPS has sufficient accuracy and reliability for this and other current timing requirements including synchronous phase angle measurements. A phasor measurement system which provides phase angle has recently been tested with excellent results. Phase angle is a key parameter in power system control applications including dynamic braking, DC modulation, remedial action schemes, and system state estimation. Further research is required to determine the applications which can most effectively use real-time phase angle measurements and the best method to apply them.

K. E. Martin↗

UTC Dissemination to the Real-Time User: The Role of USNO

Coordinated Universal Time (UTC) is available worldwide via the Global Positioning System (GPS). The UTC disseminated by GPS is referenced to the US Naval Observatory Master Clock UTC(USNO) which is regularly steered and maintained as close as possible to UTC Bureau International des Poids et Mesures (BIPM), the international time scale. This paper will describe the role of the USNO in monitoring the time disseminated by the GPS and the steps involved to ensure its accuracy to the user. The paper will also discuss the other sources of UTC(USNO) and the process by which UTC(USNO) is steered to UTC(BIPM).

Miranian, Mihran↗