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All sourcesNASA NTRSDOE OSTI
DOE OSTI2023

AmeriFlux FLUXNET-1F US-xSC NEON Smithsonian Conservation Biology Institute (SCBI)

This is the AmeriFlux Management Project (AMP) created FLUXNET-1F version of the carbon flux data for the site US-xSC NEON Smithsonian Conservation Biology Institute (SCBI). This is the FLUXNET version of the carbon flux data for the site US-xSC NEON Smithsonian Conservation Biology Institute (SCBI) produced by applying the standard ONEFlux (1F) software. Site Description - The Smithsonian Conservation Biology Institute (SCBI) site is a mid-continent forested eastern deciduous site, species include Oaks, Hickories, and Ash, and contains well defined ground cover and understory strata.

Network), NEON (National Ecological Observatory↗
DOE OSTI2020

AmeriFlux US-xSC NEON Smithsonian Conservation Biology Institute (SCBI)

This is the AmeriFlux version of the carbon flux data for the site US-xSC NEON Smithsonian Conservation Biology Institute (SCBI). Site Description - The Smithsonian Conservation Biology Institute (SCBI) site is a mid-continent forested eastern deciduous site, species include Oaks, Hickories, and Ash, and contains well defined ground cover and understory strata.

Network), NEON (National Ecological Observatory↗
NASA NTRS2001

Educating Astronauts About Conservation Biology

This article reviews the training of astronauts in the interdisciplinary work of conservation biology. The primary responsibility of the conservation biologist at NASA is directing and supporting the photography of the Earth and maintaining the complete database of the photographs. In order to perform this work, the astronauts who take the pictures must be educated in ecological issues.

Robinson, Julie A.↗
DOE OSTI2021

Renewable energy and biological conservation in a changing world

Without a shift to renewable energy sources, climate change will have adverse effects on many terrestrial and aquatic species. On the other hand, replacing fossil fuels with renewable energy will have different effects on wildlife, some negative. To protect biota, while navigating the complexities surrounding the transition to renewable energy, will require sharing knowledge between energy experts and wildlife experts, as well as policy makers and resource managers. This special issue is intended to advance the conversation. Interactions between renewable energy facilities and fauna are complex. Each source of renewable energy has its own conservation concerns, and each presents its own set of opportunities for mitigation; Other concerns and mitigations are shared. In this overview, we review climate risks to biota, clarify the complementarities among renewables for the conservation community, and summarize research on energy effects on biota for the energy community. The papers invited for this special issue address fossil (coal, oil, natural gas) and renewable energy (terrestrial biomass energy, hydropower, marine-hydrokinetic energy, wind energy, solar energy) and affected fauna. Finally, we hope that the results of these studies, and others like them, set us on a path toward low-carbon energy systems that provide society with energy while protecting future biodiversity.

29 ENERGY PLANNING, POLICY, AND ECONOMY↗
NASA NTRS2006

Space-Based Ornithology: On the Wings of Migration and Biophysics

Understanding bird migration and avian biodiversity is one of the most compelling and challenging problems of modern biology with major implications for human health and conservation biology. Migration and conservation efforts cross national boundaries and are subject to numerous international agreements and treaties. Public interest is high with concerns about avian flu, Katrina and its impacts, and the recent sightings of the ivory-billed woodpecker. Space based technology gives us new opportunities to shed light on the distribution and movement of organisms on the planet and their sensitivity to human disturbances and environmental changes. Together with the USGS and other agencies, we are creating ecological forecasting tools for science and application users to address the consequences of loss of wetlands, flooding, drought or other natural disasters such as hurricanes on avian biodiversity and bird migration. In our work, we use individual organism biophysical models of energy and water balance and drive these models with satellite measurements of spatio-temporal gradients in climate and habitat. Dynamic state variable modeling provides an additional tool for studying bird migration across multiple scales and can be linked to our mechanistic models describing the time and energy budget states of migrating birds. Such models yield an understanding of how a migratory flyway and its component habitats function as a whole and link stop-over ecology with biological conservation and management. We also build upon the canopy done by the Environmental Laboratory over the past few years.

Smith, James A.↗
NASA NTRS2008

Modeling Bird Migration in Changing Habitats: Space-based Ornithology using Satellites and GIS

Understanding bird migration and avian biodiversity is one of the most compelling and challenging problems of modern biology with major implications for human health and conservation biology. Migration and conservation efforts cross national boundaries and are subject to numerous international agreements and treaties presenting challenges in both geographic space and time. Space based technology, coupled with geographic information systems, yields new opportunities to shed light on the distribution and movement of organisms on the planet and their sensitivity to human disturbances and environmental changes. At NASA, we are creating ecological forecasting tools for science and application users to address the consequences of loss of wetlands, flooding, drought or other natural disasters such as hurricanes on avian biodiversity and bird migration. In our work, we use individual organism biophysical models and drive these models with satellite observations and numerical weather predictions of the spatio-temporal gradients in climate and habitat. Geographic information system technology comprises one component of our overall simulation framework, especially for characterizing the changing habitats and conditions encountered by en-route migratory birds. Simulation provides a tool for studying bird migration across multiple scales and can be linked to mechanistic processes describing the time and energy budget states of migrating birds. Such models yield an understanding of how a migratory flyway and its component habitats function as a whole and link stop-over ecology with biological conservation and management. We present examples of our simulation of shorebirds, principally, pectoral sandpipers, along the central flyways of the United States and Canada from the Gulf of Mexico to Alaska.

Smith, James A.↗
NASA NTRS2005

Space Based Ornithology: On the Wings of Migration and Biophysics

The study of bird migration on a global scale is one of the compelling and challenging problems of modern biology with major implications for human health and conservation biology. Migration and conservation efforts cross national boundaries and are subject to numerous international agreements and treaties. Space based technology offers new opportunities to shed understanding on the distribution and migration of organisms on the planet and their sensitivity to human disturbances and environmental changes. Migration is an incredibly diverse and complex behavior. A broad outline of space based research must address three fundamental questions: (1) where could birds be, i.e. what is their fundamental niche constrained by their biophysical limits? (2) where do we actually find birds, i.e. what is their realizable niche as modified by local or regional abiotic and biotic factors, and (3) how do they get there (and how do we know?), that is what are their migration patterns and associated mechanisms? Our working hypothesis is that individual organism biophysical models of energy and water balance, driven by satellite measurements of spatio-temporal gradients in climate and habitat, will help us to explain the variability in avian species richness and distribution. Dynamic state variable modeling provides one tool for studying bird migration across multiple scales and can be linked to mechanistic models describing the time and energy budget states of migrating birds. Such models yield an understanding of how a migratory flyway and its component habitats function as a whole and link stop-over ecology with biological conservation and management. Further these models provide an ecological forecasting tool for science and application users to address what are the possible consequences of loss of wetlands, flooding, drought or other natural disasters such as hurricanes on avian biodiversity and bird migration.

Smith, James A.↗
NASA NTRS2005

Space-based Remote Sensing: A Tool for Studying Bird Migration Across Multiple Scales

The study of bird migration on a global scale is one of the compelling and challenging problems of modern biology with major implications for human health and conservation biology. Migration and conservation efforts cross national boundaries and are subject to numerous international agreements and treaties. Space based technology offers new opportunities to shed understanding on the distribution and migration of organisms on the planet and their sensitivity to human disturbances and environmental changes. Our working hypothesis is that individual organism biophysical models of energy and water balance, driven by satellite measurements of spatio-temporal gradients in climate and habitat, will help us to explain the variability in avian species richness and distribution. Further, these models provide an ecological forecasting tool for science and application users to visualize the possible consequences of loss of wetlands, flooding, or other natural disasters such as hurricanes on avian biodiversity and bird migration.

Smith, James A.↗
NASA NTRS2007

Alaska at the Crossroads of Migration: Space Based Ornithology

Understanding bird migration on a global scale is one of the most compelling and challenging problems of modern biology with major implications for human health and conservation biology. Revolutionary advances in remote sensing now provide us with near real-time measurements of atmospheric and land surface conditions at high spatial resolution over entire continents. We use spatially-explicit, individual based bird migration models driven by numerical weather prediction models of atmospheric conditions, dynamic habitat suitability maps derived from remotely sensed land surface conditions, biophysiological models, and biological field data to simulate migration routes, timing, energy budgets, and survival of individual birds and populations. Long-distance migratory birds travel annually between breeding grounds in Alaska and wintering grounds in Latin Amierica. Approximately 25% of these species are potential vectors of Avian Influenza. Alaska is at the crossroads of Asian and New World migratory flyways and is likely to be a point of introduction of Asian H5N1 AI into the western hemisphere. If/when an infected bird is detected, a pressing question will be where was this bird several days ago, and where is it likely to go after it was released from the survey site? Answers to such questions will increase effectiveness of AI surveillance and mitigation measures. From a conservation perspective, Alaska's diverse landscape provides breeding sites for many migrants, and climatic and land surface changes along migratory flyways in the western hemisphere may reduce bird survival and physical condition upon arrival at Alaskan breeding territories, success and migrant populations.

Deppe, Jill↗
NASA NTRS2019

Cross Kingdom Analysis of Data Within the GeneLab Repository Identifies a Potential Conserved Response of Life to the Stress Associated with Spaceflight

It is important to determine the health risks and potential survival for astronauts associated with long-term space missions. This entails not only understanding the impact the space environment will have on humans, but also how it will affect other organisms needed for humans to survive in space such as plants. In addition, it has been reported in the literature that hundreds of genes seem to be conserved and/or transferred between different organisms from bacteria, archaea, fungi, microorganisms, and plants to animals. Since space travel involves humans in a closed environment over a long period of time, we hypothesize that potential conserved biological factors will occur between the different organisms in that environment possibly due to transfer of genes. Determining the conserved factors that are commonly being regulated in space can shed insight into possible universal master regulators and also determine the symbiotic relationship between the organisms in space. Utilizing NASA's GeneLab Data Repository (a rapidly expanding, curated clustering of spaceflight-related ‘omics-level datasets for all organisms), we were able to uncover a novel pathway and factors that were commonly shared between humans, mice, plants, C. Elegans, and drosophilas. Through ChIP-Seq enrichment analysis techniques utilizing various GeneLab datasets from each species that were flown in space, we found the following factors to be conserved across all species: oxidative stress, DNA damage (through GABPA/NRFs and NFY), SIX5, GTF2B and glutamine synthetase. Such commonalities would likely reflect the effects of factors such as microgravity and the increased radiation exposure inherent in spaceflight on basic physical processes shared by all biological systems at the cellular level. Differences between organismal responses revealed by GeneLab's data should also help understand the unique reactions to life in space that arise from the very different lifestyles of microbes, animals and plants.

Barker, Richard↗
NASA NTRS1995

Remotely sensed indicators of habitat heterogeneity and biological diversity: A preliminary report

The relationship between habitat area, spatial dynamics of the landscape, and species diversity is an important theme in population and conservation biology. Of particular interest is how populations of various species are affected by increasing habitat edges due to fragmentation. Over the last decade, assumptions regarding the effects of habitat edges on biodiversity have fluctuated wildly, from the belief that they have a positive effect to the belief that they have a clearly negative effect. This change in viewpoint has been brought about by an increasing recognition of the importance of geographic scale and a reinterpretation of natural history observations. In this preliminary report from an ongoing project, we explore the use of remote sensing technology and geographic information systems to further our understanding of how species diversity and population density are affected by habitat heterogeneity and landscape composition. A primary feature of this study is the investigation of SAR for making more rigorous investigations of habitat structure by exploiting the interaction between radar backscatter and vegetation structure and biomass. A major emphasis will be on the use of SAR data to define relative structural types based on measures of structural consolidation using the vegetation surface area to volume ratio (SA/V). Past research has shown that SAR may be sensitive to this form of structural expression which may affect biodiversity.

Imhoff, Marc↗
NASA NTRS2014

Myanmar Ecological Forecasting: Utilizing NASA Earth Observations to Monitor, Map, and Analyze Mangrove Forests in Myanmar for Enhanced Conservation

Mangroves supply many essential environmental amenities, such as preventing soil erosion, filtering water pollution, and protecting shorelines from harmful waves, floods, storms and winds. The Mangroves in Myanmar not only provide citizens with a food source, but they also offer firewood, charcoal, and construction materials. The depletion of mangroves is threatening more than the biodiversity however; Myanmar's fiscal livelihood is also in harm's way. Mangroves are valued at $100,000 to $277,000 per square kilometer and if managed in a sustainable fashion, can infuse constant income to the emerging Myanmarese economy. This study analyzed three coastline regions, the Ayeyarwady Delta, Rakhine and Tanintharyi, and mapped the spatial extent of mangrove forest during the dry season in 2000 and 2013. The classifications were derived from Landsat 7 Enhanced Thematic Mapper Plus (ETM+) and Landsat 8 Operation Land Imager (OLI) imagery, as well as the Terra Advanced Spaceborne Thermal Emission and Reflection Radiometer (ASTER) digital elevation model information. This data was atmospherically corrected, mosaicked, masked and classified in ENVI, followed by ArcGIS to perform raster calculations and create final products. Forest degradation collected from 2000 to 2013 was later used to forecast the density and health of Mangroves in the year 2030. These results were subsequently presented to project partners Dr. Peter Leimgruber and Ellen Aiken at the Smithsonian Conservation Biology Institute in Front Royal, VA. After the presentation of the project to the partners, these organizations formally passed on to the Myanmar Ministry of Environment, Conservation and Forestry for policy makers and forest managers to utilize in order to protect the Myanmar mangrove ecosystem while sustaining a healthy economy.

Weber, Samuel J.↗
NASA NTRS2000

Three Conservation Applications of Astronaut Photographs of Earth: Tidal Flat Loss (Japan), Elephant Impacts on Vegetation (Botswana), and Seagrass and Mangrove Monitoring (Australia)

NASA photographs taken from low Earth orbit can provide information relevant to conservation biology. This data source is now more accessible due to improvements in digitizing technology, Internet file transfer, and availability of image processing software. We present three examples of conservation-related projects that benefited from using orbital photographs. (1) A time series of photographs from the Space Shuttle showing wetland conversion in Japan was used as a tool for communicating about the impacts of tidal flat loss. Real-time communication with astronauts about a newsworthy event resulted in acquiring current imagery. These images and the availability of other high resolution digital images from NASA provided timely public information on the observed changes. (2) A Space Shuttle photograph of Chobe National Park in Botswana was digitally classified and analyzed to identify the locations of elephant-impacted woodland. Field validation later confirmed that areas identified on the image showed evidence of elephant impacts. (3) A summary map from intensive field surveys of seagrasses in Shoalwater Bay, Australia was used as reference data for a supervised classification of a digitized photograph taken from orbit. The classification was able to distinguish seagrasses, sediments and mangroves with accuracy approximating that in studies using other satellite remote sensing data. Orbital photographs are in the public domain and the database of nearly 400,000 photographs from the late 1960s to the present is available at a single searchable location on the Internet. These photographs can be used by conservation biologists for general information about the landscape and in quantitative applications.

Lulla, Kamlesh P.↗
DOE OSTI2024

Seed classification with random forest models

Premise: To improve forest conservation monitoring, we developed a protocol to automatically count and identify the seeds of plant species with minimal resource requirements, making the process more efficient and less dependent on human operators. Methods and Results: Seeds from six North American conifer tree species were separated from leaf litter and imaged on a flatbed scanner. In the most successful species-classification approach, an ImageJ macro automatically extracted measurements for random forest classification in the software R. The method allows for good classification accuracy, and the same process can be used to train the model on other species. Conclusions: This protocol is an adaptable tool for efficient and consistent identification of seed species or potentially other objects. Automated seed classification is efficient and inexpensive, making it a practical solution that enhances the feasibility of large-scale monitoring projects in conservation biology.

59 BASIC BIOLOGICAL SCIENCES↗
DOE OSTI2020

Clades of huge phages from across Earth’s ecosystems

Bacteriophages typically have small genomes and depend on their bacterial hosts for replication. Here we sequenced DNA from diverse ecosystems and found hundreds of phage genomes with lengths of more than 200 kilobases (kb), including a genome of 735 kb, which is—to our knowledge—the largest phage genome to be described to date. Thirty-five genomes were manually curated to completion (circular and no gaps). Expanded genetic repertoires include diverse and previously undescribed CRISPR–Cas systems, transfer RNAs (tRNAs), tRNA synthetases, tRNA-modification enzymes, translation-initiation and elongation factors, and ribosomal proteins. The CRISPR–Cas systems of phages have the capacity to silence host transcription factors and translational genes, potentially as part of a larger interaction network that intercepts translation to redirect biosynthesis to phage-encoded functions. In addition, some phages may repurpose bacterial CRISPR–Cas systems to eliminate competing phages. We phylogenetically define the major clades of huge phages from human and other animal microbiomes, as well as from oceans, lakes, sediments, soils and the built environment. We conclude that the large gene inventories of huge phages reflect a conserved biological strategy, and that the phages are distributed across a broad bacterial host range and across Earth’s ecosystems.

59 BASIC BIOLOGICAL SCIENCES↗
DOE OSTI2025

Hepatocellular Metabolic Profile: Understanding Post-Thawing Metabolic Shift in Primary Hepatocytes In Vitro

Primary human hepatocytes (PHHs) are widely used as in vitro models for liver function and drug metabolism studies, yet their metabolic stability post-thawing remains an open question. To better characterize early metabolic changes, we conducted a time-course experiment using liquid chromatography-tandem mass spectrometry (LC-MS/MS) to analyze metabolic shifts in PHHs cultured in suspension. Unexposed and exposed (acetaminophen-treated) samples were evaluated, and TITAN analysis was applied to determine the time point of maximal metabolic change at both individual metabolite and global metabolic profile levels. Our results indicate that the majority of metabolic shifts occur within the first five hours post-thawing. In the early culture time points, substantial metabolic overlap was observed between unexposed and exposed cells, suggesting a conserved biological response likely related to cellular recovery. However, at later time points, metabolite profiles diverged, with acetaminophen treatment-specific metabolic changes emerging, potentially reflecting differences in homeostatic restoration versus hepatotoxic responses. Our study highlights the importance of considering early post-thawing metabolic dynamics in experimental design and offers insights for optimizing hepatocyte culture protocols to better replicate in vivo physiological conditions.

59 BASIC BIOLOGICAL SCIENCES↗
NASA NTRS1999

Biodiversity and Ecology of Amphibians and Reptiles of the Kennedy Space Center: 1998 Close-Out Report to NASA

Since 1992, there have been researchers have been studying the population ecology and conservation biology of the amphibians and reptiles of the Kennedy Space Center (KSC) This research is an outgrowth of my Master's work in the late 1970's under Lew Ehrhart at UCF. The primary emphasis of our studies are (1) examination of long-term changes in the abundance of amphibians and reptile populations, (2) occurrence and effects of Upper Respiratory Tract Disease (URTD) in gopher tortoises (Gopherus polyphemus), and (3) ecological studies of selected species.

Sigel, Richard A.↗