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Search indexed NASA NTRS and DOE OSTI research on propulsion, heat transfer, battery materials and energy systems. Follow report and document links to the original sources.

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At least 19 records
All sourcesNASA NTRSDOE OSTI
DOE OSTI2023

Identification of recG genetic interactions in Escherichia coli by transposon sequencing

ABSTRACT Maintaining the integrity of the genome is of utmost importance for cell division and propagation. In Escherichia coli , the RecG protein has been implicated in processing branched recombination intermediates during DNA repair processes, but the primary cellular role(s) of RecG and the repair pathways in which it acts have been difficult to define. To gain additional insight into RecG function, we employed transposon sequencing to identify recG genetic interactions and reveal complementary or redundant functions. The strongest hits from the screen were the dam , uvrD , rnhA , radA , and rep genes. The conditional importance of these five genes in cells lacking recG was confirmed using a plasmid-based assay, revealing synthetic lethal interactions for most double deletion strains. Several of the synthetic lethal gene combinations (with uvrD, rep, and radA , but not rnhA or dam ) were suppressed by deletion of recF or recO , indicating that their genetic relationships involved roles in post-replication gap repair. Additionally, loss of the RecG/SSB interaction phenocopied a recG deletion when combined with dam , uvrD , radA , or rnhA deletions but not with rep . The results reinforce the idea of RecG as a general genome guardian. RecG has at least two functions. It plays an important role in the resolution of joint molecules behind the fork, formed during post-replication gap repair. RecG is also required to suppress genome over-replication caused by unscheduled replication initiation at R-loops, at double-strand breaks caused by dam inactivation, and during replication termination. IMPORTANCE DNA damage and subsequent DNA repair processes are mutagenic in nature and an important driver of evolution in prokaryotes, including antibiotic resistance development. Genetic screening approaches, such as transposon sequencing (Tn-seq), have provided important new insights into gene function and genetic relationships. Here, we employed Tn-seq to gain insight into the function of the recG gene, which renders Escherichia coli cells moderately sensitive to a variety of DNA-damaging agents when they are absent. The reported recG genetic interactions can be used in combination with future screens to aid in a more complete reconstruction of DNA repair pathways in bacteria.

59 BASIC BIOLOGICAL SCIENCES↗
DOE OSTI2025

Constraining explosive nucleosynthesis by indirect reaction methods at storage rings using unstable beams in batch mode

Nuclear reaction studies on unstable isotopes can strongly help in improving our understanding of nucleosynthesis in stars. Indirect approaches to determining astrophysical reaction rates are increasingly common-place and undergoing continuous refinement. Of particular interest is the use of such indirect techniques at storage rings, which, among other aspects, allow to recycle rare unstable beams. Here, we propose to investigate the reaction rates of astrophysical interest using indirect methods (surrogate, Trojan horse, etc.) in reverse kinematics at the IMP-CAS storage ring. Long lived radioactive ion beams, produced remotely, can be accelerated, and made to interact with light targets. The proposed reactions are 85 Kr(p, p’γ), 85 Kr(d, pγ), constraining the neutron flux in an s-process branching point, 79 Se(p, p’γ), 79 Se(d, pγ), constraining the temperature in s-process nucleosyntheses, and 59 Fe(d, pγ), constraining core collapse supernovae.

Angelis, G. de [National Inst. of Nuclear Physics ↗
DOE OSTI2025

The 22 Ne(α,n) 25 Mg reaction - state of the art, astrophysics, and perspectives

One of the most important stellar neutron sources is the 22 Ne(α,n) 25 Mg reaction, which gets activated both during the helium intershell burning in asymptotic giant branch stars and in core helium and shell carbon burning in massive stars. The 22 Ne(α,n) 25 Mg reaction serves as the main neutron producer for the weak s-process and provides a short but strong neutron exposure during the helium flash phase of the main s-process, significantly affecting the abundances at the s-process branch points. The cross section needs to be known at very low energies, as close as possible to the neutron threshold at E α = 562 keV (Q = −478 keV), but both direct and indirect measurements have turned out to be very challenging, leading to significant uncertainties. Here we discuss the current status of the reaction, including recent and upcoming measurements, and provide a discussion on the astrophysical implications as well as an outlook into the near future.

73 NUCLEAR PHYSICS AND RADIATION PHYSICS↗
DOE OSTI2025

The 22Ne($$\alpha $$,n)25Mg reaction - state of the art, astrophysics, and perspectives

Abstract One of the most important stellar neutron sources is the 22 Ne( $$\alpha ,n$$ α , n ) 25 Mg reaction, which gets activated both during the helium intershell burning in asymptotic giant branch stars and in core helium and shell carbon burning in massive stars. The 22 Ne( $$\alpha ,n$$ α , n ) 25 Mg reaction serves as the main neutron producer for the weak s -process and provides a short but strong neutron exposure during the helium flash phase of the main s -process, significantly affecting the abundances at the s -process branch points. The cross section needs to be known at very low energies, as close as possible to the neutron threshold at $$E_\alpha =$$ E α = 562 keV ( Q = −478 keV), but both direct and indirect measurements have turned out to be very challenging, leading to significant uncertainties. Here we discuss the current status of the reaction, including recent and upcoming measurements, and provide a discussion on the astrophysical implications as well as an outlook into the near future.

73 NUCLEAR PHYSICS AND RADIATION PHYSICS↗
DOE OSTI2023

The s process in massive stars, a benchmark for neutron capture reaction rates

A clear definition of the contribution from the slow neutron-capture process (s process) to the solar abundances between Fe and the Sr-Zr region is a crucial challenge for nuclear astrophysics. Robust s-process predictions are necessary to disentangle the contribution from other stellar processes producing elements in the same mass region. Nuclear uncertainties are affecting s-process calculations, but most of the needed nuclear input are accessible to present nuclear experiments or they will be in the near future. Neutron-capture rates have a great impact on the s process in massive stars, which is a fundamental source for the solar abundances of the lighter s-process elements heavier than Fe (weak s-process component). In this work we present a new nuclear sensitivity study to explore the impact on the s process in massive stars of 86 neutron-capture rates, including all the reactions between C and Si and between Fe and Zr. We derive the impact of the rates at the end of the He-burning core and at the end of the C-burning shell, where the 22 Ne(α,n) 25 Mg reaction is is the main neutron source. We confirm the relevance of the light isotopes capturing neutrons in competition with the Fe seeds as a crucial feature of the s process in massive stars. For heavy isotopes we study the propagation of the neutron-capture uncertainties, finding a clear difference of the impact of Fe and Co isotope rates with respect to the rates of heavier stable isotopes. The local uncertainty propagation due to the neutron-capture rates at the s-process branching points is also considered, discussing the example of 85 Kr. The complete results of our study for all the 86 neutron-capture rates are available online. Finally, we present the impact on the weak s process of the neutron-capture rates included in the new ASTRAL library (v0.2).

79 ASTRONOMY AND ASTROPHYSICS↗
DOE OSTI2022

A Note on the Probability of Initiation Problem

The purpose of this note is to draw attention to Pál for his derivation of the Pál-Bell equation which is used by LLNL and LANL to model Probability of Initiation (POI) problems. Both laboratories credit the equation to Bell and Lee. Although the equation formulated by Bell and Lee and the equation derived by Pál appear to be the same, the equation by Bell and Lee is flawed. Scattering, which was absent in Bell’s original formulation of a POI problem, was later introduced by Bell and Lee by replacing a fission term with a scattering term. Such a replacement, however, leads to an incorrect average number $\overline{v}$ of neutrons that is produced in a fission event. By approaching a POI problem from probabilistic point of view, Pál formulates the problem as a branching process that i) describes the growth of a population of neutrons in a fissile medium, and ii) predicts $\overline{v}$ correctly. There are five reasons for writing this report. The first is to clarify the failing in Bell and Lee’s derivation. The second is to establish the origin of the equation used by the laboratories. The third is to elucidate the fixed point technique formulated by Mokhtar-Kharroubi to solve the Pál-Bell equation. The fourth is to derive the α eigenvalue that is associated with a super-critical situation. The fifth is to describe in the Appendix a second order positivity preserving technique that accelerates the convergence of the first order fixed point method developed by Mokhtar-Kharroubi.

73 NUCLEAR PHYSICS AND RADIATION PHYSICS↗
DOE OSTI2022

A Note on the Probability of Initiation Problem

The purpose of this note is to draw attention to Pál’s derivation of the Pál Bell equation which is used by LLNL and LANL to model Probability of Initiation (POI) problems. Both laboratories credit the equation to Bell and Lee. Although the equation formulated by Bell and Lee and the equation derived by Pál appear to be the same, the derivation by Bell and Lee is flawed. Scattering, which was absent in Bell’s original formulation of a POI problem, was later introduced by Bell and Lee by simply replacing a fission term with a scattering term. Such a replacement, however, leads to an inaccurate average number v̅ of neutrons that is produced by a fission event. By approaching a POI problem from probabilistic point of view, Pál formulates the problem as a branching process that determines v̅ correctly. There are six reasons for writing this report. The first is to clarify the failing in Bell and Lee’s derivation. The second is to establish the origin of the equation used by the laboratories. The third is to elucidate the fixed point technique formulated by Mokhtar-Kharroubi for solving the Pál-Bell equation. The fourth is to derive the α eigenvalue that is associated with a time dependent Pál-Bell equation. The fifth is to show in Appendix A that the non-linear fission operator of the Pál-Bell equation is descended from the operator of the Galton-Watson process of stochastic theory. The sixth is to describe in Appendix B a second order positivity preserving technique that accelerates the convergence of the first order fixed point method developed by Mokhtar-Kharroubi.

73 NUCLEAR PHYSICS AND RADIATION PHYSICS↗
DOE OSTI2025

A Python Tool for Reconstructing MCNP6 Particle Histories from an HDF5 PTRAC File [Slides]

A Python tool for converting the MCNP6 HDF5 PTRAC file to a list of Python trees is presented. The particle trees store MCNP6 simulated events for each history using parent-child relationships, which ensures that branching processes are accurately reproduced. A variety of post-processing scripts are presented and used in conjunction with the Python particle trees to make special tallies that are currently not available in the MCNP6 software and visualize the particle tracks.

97 MATHEMATICS AND COMPUTING↗
DOE OSTI2026

Taste Perception of Branched Maltooligosaccharides

Oral processing of starch generates linear and branched maltooligosaccharides (MOS). This study investigates the impact of branching and the degree of polymerization (DP) on MOS taste detection. Three branched MOS samples (A−C) were enzymatically prepared from gelatinized waxy corn starch and characterized using reducing-end assays, MALDI-TOF MS, β-amylase hydrolysis, and GC-MS linkage analysis. Samples A, B, and C had average DPs of 6, 10, and 18, respectively, with α-1,6 branch points comprising 9−13% of glycosidic bonds; linear MOS were negligible. In triangle tests, participants evaluated MOS samples and a maltose control at 75 mM, with and without lactisole, a sweet receptor inhibitor. All samples were detectable without lactisole (d′ = 1.81−2.9; p < 0.05), but not with lactisole (d′ = 0−0.61; p > 0.05). These findings demonstrate that α-1,6 branching enables MOS detection via the sweet receptor, not the putative “starchy” receptor, underscoring the importance of glycosidic structure in carbohydrate taste perception.

37 INORGANIC, ORGANIC, PHYSICAL, AND ANALYTICAL CH↗
DOE OSTI2023

OH Roaming during the Ozonolysis of α-Pinene: A New Route to Highly Oxygenated Molecules?

The formation of low-volatility organic compounds in the ozonolysis of α-pinene, the dominant atmospheric monoterpene, provides an important route to aerosol formation. Here, in this work, we consider a previously unexplored set of pathways for the formation of highly oxygenated molecules in α-pinene ozonolysis. Pioneering, direct experimental observations of Lester and co-workers have demonstrated a significant production of hydroxycarbonyl products in the dissociation of Criegee intermediates. Theoretical analyses indicate that this production arises from OH roaming-induced pathways during the OO fission of the vinylhydroperoxides (VHPs), which in turn come from internal H transfers in the Criegee intermediates. Ab initio kinetics computations are used here to explore the OH roaming-induced channels that arise from the ozonolysis of α-pinene. For computational reasons, the calculations consider a surrogate for α-pinene, where two spectator methyl groups are replaced with H atoms. Multireference electronic structure calculations are used to illustrate a variety of energetically accessible OH roaming pathways for the four VHPs arising from the ozonolysis of this α-pinene surrogate. Ab initio transition-state theory-based master equation calculations indicate that for the dissociation of stabilized VHPs, these OH roaming pathways are kinetically significant with a branching that generally increases from ~20% at room temperature up to ~70% at lower temperatures representative of the troposphere. For one of the VHPs, this branching already exceeds 60% at room temperature. For the overall ozonolysis process, these branching ratios would be greatly reduced by a limited branching to the stabilized VHP, although there would also be some modest roaming fraction for the nonthermal VHP dissociation process. The strong exothermicities of the roaming-induced isomerizations/additions and abstractions suggest new routes to fission of the cyclobutane rings. Such ring fissions would facilitate further autoxidation reactions, thereby providing a new route for producing highly oxygenated nonvolatile precursors to aerosol formation.

37 INORGANIC, ORGANIC, PHYSICAL, AND ANALYTICAL CH↗
DOE OSTI2022

A separations and purification process for improving yields and meeting fuel contaminant specifications for high-octane gasoline produced from dimethyl-ether over a Cu/BEA catalyst

In this work, we have been developing a three-step conversion of biomass-derived syngas to methanol to dimethyl-ether (DME) to non-aromatic hydrocarbons for use as high-octane gasoline and sustainable aviation fuel. This process produces branched alkanes from DME using a Cu/BEA catalyst and is a promising alternative to other syngas conversion processes such as Fischer-Tropsch to linear alkanes and traditional ZSM-5 catalyzed methanol to aromatic gasoline. In this short article we describe some advances in our understanding related to separations and purification via the use of more detailed experimental speciation in an updated process model involving multiple phase equilibrium-based separation steps. Primary modeled reactor outlet constituents (and weight %) are: C3 and lighter hydrocarbon gases (11.1%), C4s (54.5%), H 2 (1.2%), CO 2 (2.9%), water (5.0%), unreacted DME (16.5%), methanol (2.3%), and C5+ hydrocarbons (6.4%). DME (the primary reactant) and H 2 recycle and reuse are important for the overall process efficiency, and the recycle of C4s is important to increase the C5+ yield via reactivation and homologation. Thus H 2 , C4s, and DME are targeted for recycle, while methanol and water need to be removed from the product to conform with fuel specifications. Model predictions from Aspen Plus using the NRTL-RK property method indicate a fuel composition with C5+ content of 97.1 wt%, with minor constituents: 2.4 wt% C4s, 0.3 wt% methanol, 0.1 wt% DME, 0.03 wt% water, and 0.01 wt% C3s. These ranges of minor components conform with fuel quality requirements, and the modeled product is amenable for unconstrained blending to boost gasoline octane ratings.

09 BIOMASS FUELS↗
DOE OSTI2026

Phase Picking Beyond Local Distances: Where Waveform Filtering Still Matters for Deep Learning Models

Waveform filtering is a standard step in traditional seismic phase picking but often receives little attention in deep learning workflows, where models are typically trained on raw or minimally processed waveforms. Although this strategy performs well for local events, we show that performance can degrade substantially at regional distances. To address this limitation, we introduce two ways to incorporate multiband-filtered waveforms into deep learning phase pickers. The stacking approach concatenates filtered inputs along the channel dimension, while the branching approach processes each frequency band through a dedicated network branch before feature fusion. Both approaches can substantially improve performance across epicentral distances of 0° to 20°, but their effectiveness depends strongly on the selected frequency bands. Tests with multiple filter banks show that filter-bank design should be treated as part of model optimization rather than as a fixed preprocessing choice. Grad-CAM analysis of the branching model indicates that band importance varies among waveform samples and across training realizations, with only a weak overall preference for the 0.25 to 0.5 Hz band. These results show that no single filter band is consistently optimal and demonstrate that explicit feature engineering remains valuable for robust deep learning-based seismic phase picking.

58 GEOSCIENCES↗
DOE OSTI2022

Amplitude analysis and branching fraction measurement of $D_s^+$ →$K^–K^+π^+π^+π^–$

Using $e^+e^–$ annihilation data corresponding to a total integrated luminosity of 6.32 fb –1 collected at the center-of-mass energies between 4.178 and 4.226 GeV with the BESIII detector, we perform an amplitude analysis of the decay $D_s^+$ →$K^–K^+π^+π^+π^–$ and determine the relative fractions and phases of different intermediate processes. Absolute branching fraction of $D_s^+$ →$K^–K^+π^+π^+π^–$ decay is measured to be (6.60 ± 0.47 stat. ± 0.38 syst. ) x 10 –3 . The dominant intermediate process is $D_s^+$ → $a_1$(1260) + $\phi, \phi$ → $K^–K^+ a_1$(1260) + → $ρπ^+$, $ρ → π^+π^–$, with a branching fraction of (5.15 ± 0.41 stat. ± 0.32 syst. ) x 10 –3 .

71 CLASSICAL AND QUANTUM MECHANICS, GENERAL PHYSIC↗
DOE OSTI2024

Measurement of the branching fraction of D s + → ℓ + ν ℓ via e + e − → D s * + D s * −

Based on 10.64 fb − 1 of e + e − collision data taken at center-of-mass energies between 4.237 and 4.699 GeV with the BESIII detector, we study the leptonic D s + decays using the e + e − → D s * + D s * − process. The branching fractions of D s + → ℓ + ν ℓ ( ℓ = μ , τ ) are measured to be B D s + → μ + ν μ = ( 0.547 ± 0.02 6 stat ± 0.01 6 syst ) % and B D s + → τ + ν τ = ( 5.60 ± 0.1 6 stat ± 0.2 0 syst ) % , respectively. The product of the decay constant and Cabibbo-Kobayashi-Maskawa matrix element | V c s | is determined to be f D s + | V c s | = ( 246.5 ± 5.9 stat ± 3.6 syst ± 0.5 input ) μ ν and f D s + | V c s | = ( 252.7 ± 3.6 stat ± 4.5 syst ± 0.6 input ) τ ν MeV , respectively. Taking the value of | V c s | from a global fit in the Standard Model, we obtain f D s + = ( 253.2 ± 6.0 stat ± 3.7 syst ± 0.6 input ) μ ν and f D s + = ( 259.6 ± 3.7 stat ± 4.6 syst ± 0.6 input ) τ ν MeV , respectively. Conversely, taking the value for f D s + from the latest lattice quantum chromodynamics calculation, we obtain | V c s | = ( 0.986 ± 0.02 3 stat ± 0.01 4 syst ± 0.00 3 input ) μ ν and | V c s | = ( 1.011 ± 0.01 4 stat ± 0.01 8 syst ± 0.00 3 input ) τ ν , respectively. Published by the American Physical Society 2024

Astronomy & Astrophysics↗
DOE OSTI2024

Study of e + e − → ω X ( 3872 ) and γ X ( 3872 ) from 4.66 to 4.95 GeV

Using data samples with an integrated luminosity of 4.5 fb − 1 collected by the BESIII detector at center-of-mass energies ranging from 4.66 GeV to 4.95 GeV, we study the processes of e + e − → ω X ( 3872 ) and e + e − → γ X ( 3872 ) . With the e + e − → ω X ( 3872 ) process, the branching fraction ratio R ≡ B ( X ( 3872 ) → γ J / ψ ) B ( X ( 3872 ) → π + π − J / ψ ) is measured to be 0.38 ± 0.2 0 stat ± 0.0 1 syst ( R < 0.83 at 90% confidence level). In addition, we measure the ratio of the average cross section of e + e − → ω X ( 3872 ) to e + e − → ω χ c 1 ( ω χ c 2 ) to be σ ω X ( 3872 ) / σ ω χ c 1 ( σ ω X ( 3872 ) / σ ω χ c 2 ) = 5.2 ± 1.0 stat ± 1.9 syst ( 5.5 ± 1.1 stat ± 2.4 syst ) . Finally, we search for the process of e + e − → γ X ( 3872 ) , and no obvious signal is observed. The upper limit on the ratio of the average cross section of e + e − → γ X ( 3872 ) to e + e − → ω X ( 3872 ) is set as σ γ X ( 3872 ) / σ ω X ( 3872 ) < 0.23 at 90% confidence level. Published by the American Physical Society 2024

Astronomy & Astrophysics↗
DOE OSTI2022

Experimental and computational investigation of the influence of iso -butanol on autoignition of n -decane and n -heptane in non-premixed flows

Experimental and computational investigation is carried out to elucidate the influence of iso-butanol on critical conditions of autoignition of n-decane and n-heptane. The counterflow configuration is employed. In this configuration an axisymmetric stream of air is directed over the surface of an evaporating pool of a liquid fuel. A stagnation plane is established. The temperature of the air is increased until autoignition is achieved in the mixing layer in the vicinity of the stagnation plane. The temperature of the air stream at autoignition, T ig , is measured at various values of the strain rate, which is defined as the axial gradient of the axial component of the flow velocity at the stagnation plane. Fuels tested are n-decane, n-heptane, iso-butanol and various mixtures of n-decane/iso-butanol and n-heptane/iso-butanol. Kinetic modeling is carried out using the recently updated version of the comprehensive CRECK chemical-kinetic mechanism. Critical conditions of autoignition are predicted for all fuels and fuel mixtures and the results are compared with the measurements. Computations show that low-temperature chemistry plays a significant role in promoting autoignition of n-decane and n-heptane, and the influence of low-temperature chemistry decreases with increasing strain rates because there is insufficient residence for the low-temperature reactions to take place. Experimental data and numerical simulations show that addition of even small amounts of iso-butanol to n-decane or n-heptane increases the value of T ig at low strain rates indicating that iso-butanol strongly inhibits the low-temperature chemistry of n-decane and n-heptane. Furthermore, the simulations show that when iso-butanol is present in the liquid fuel, only a small amount of n-decane is available in the gas phase and its low concentration cannot effectively sustain the low temperature degenerate branching oxidation process. Here, predicted flame structures show that the peak values of mole fraction of ketohydroperoxide are significantly reduced when iso-butanol is added to n-decane indicating that the kinetic pathway to low temperature ignition is blocked. This observation is confirmed from sensitivity analysis.

42 ENGINEERING↗
DOE OSTI2022

Why are cell populations maintained via multiple compartments?

We consider the maintenance of ‘product’ cell populations from ‘progenitor’ cells via a sequence of one or more cell types, or compartments, where each cell’s fate is chosen stochastically. If there is only one compartment then large amplification, that is, a large ratio of product cells to progenitors comes with disadvantages. The product cell population is dominated by large families (cells descended from the same progenitor) and many generations separate, on average, product cells from progenitors. These disadvantages are avoided using suitably constructed sequences of compartments: the amplification factor of a sequence is the product of the amplification factors of each compartment, while the average number of generations is a sum over contributions from each compartment. Passing through multiple compartments is, in fact, an efficient way to maintain a product cell population from a small flux of progenitors, avoiding excessive clonality and minimizing the number of rounds of division en route. We use division, exit and death rates, estimated from measurements of single-positive thymocytes, to choose illustrative parameter values in the single-compartment case. We also consider a five-compartment model of thymocyte differentiation, from double-negative precursors to single-positive product cells.

59 BASIC BIOLOGICAL SCIENCES↗