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At least 19 records
All sourcesNASA NTRSDOE OSTI
DOE OSTI2023

Identification of recG genetic interactions in Escherichia coli by transposon sequencing

ABSTRACT Maintaining the integrity of the genome is of utmost importance for cell division and propagation. In Escherichia coli , the RecG protein has been implicated in processing branched recombination intermediates during DNA repair processes, but the primary cellular role(s) of RecG and the repair pathways in which it acts have been difficult to define. To gain additional insight into RecG function, we employed transposon sequencing to identify recG genetic interactions and reveal complementary or redundant functions. The strongest hits from the screen were the dam , uvrD , rnhA , radA , and rep genes. The conditional importance of these five genes in cells lacking recG was confirmed using a plasmid-based assay, revealing synthetic lethal interactions for most double deletion strains. Several of the synthetic lethal gene combinations (with uvrD, rep, and radA , but not rnhA or dam ) were suppressed by deletion of recF or recO , indicating that their genetic relationships involved roles in post-replication gap repair. Additionally, loss of the RecG/SSB interaction phenocopied a recG deletion when combined with dam , uvrD , radA , or rnhA deletions but not with rep . The results reinforce the idea of RecG as a general genome guardian. RecG has at least two functions. It plays an important role in the resolution of joint molecules behind the fork, formed during post-replication gap repair. RecG is also required to suppress genome over-replication caused by unscheduled replication initiation at R-loops, at double-strand breaks caused by dam inactivation, and during replication termination. IMPORTANCE DNA damage and subsequent DNA repair processes are mutagenic in nature and an important driver of evolution in prokaryotes, including antibiotic resistance development. Genetic screening approaches, such as transposon sequencing (Tn-seq), have provided important new insights into gene function and genetic relationships. Here, we employed Tn-seq to gain insight into the function of the recG gene, which renders Escherichia coli cells moderately sensitive to a variety of DNA-damaging agents when they are absent. The reported recG genetic interactions can be used in combination with future screens to aid in a more complete reconstruction of DNA repair pathways in bacteria.

59 BASIC BIOLOGICAL SCIENCES↗
NASA NTRS1997

Morphological evidence for local microcircuits in rat vestibular maculae

Previous studies suggested that intramacular, unmyelinated segments of vestibular afferent nerve fibers and their large afferent endings (calyces) on type I hair cells branch. Many of the branches (processes) contain vesicles and are presynaptic to type II hair cells, other processes, intramacular nerve fibers, and calyces. This study used serial section transmission electron microscopy and three-dimensional reconstruction methods to document the origins and distributions of presynaptic processes of afferents in the medial part of the adult rat utricular macula. The ultrastructural research focused on presynaptic processes whose origin and termination could be observed in a single micrograph. Results showed that calyces had 1) vesiculated, spine-like processes that invaginated type I cells and 2) other, elongate processes that ended on type II cells pre- as well as postsynaptically. Intramacular, unmyelinated segments of afferent nerve fibers gave origin to branches that were presynaptic to type II cells, calyces, calyceal processes, and other nerve fibers in the macula. Synapses with type II cells occurred opposite subsynaptic cisternae (C synapses); all other synapses were asymmetric. Vesicles were pleomorphic but were differentially distributed according to process origin. Small, clear-centered vesicles, approximately 40-60 nm in diameter, predominated in processes originating from afferent nerve fibers and basal parts of calyces. Larger vesicles approximately 70-120 nm in diameter having approximately 40-80 nm electron-opaque cores were dominant in processes originating from the necks of calyces. Results are interpreted to indicate the existence of a complex system of intrinsic feedforward (postsynaptic)-feedback (presynaptic) connections in a network of direct and local microcircuits. The morphological findings support the concept that maculae dynamically preprocess linear acceleratory information before its transmission to the central nervous system.

NASA Center ARC↗
DOE OSTI2025

Constraining explosive nucleosynthesis by indirect reaction methods at storage rings using unstable beams in batch mode

Nuclear reaction studies on unstable isotopes can strongly help in improving our understanding of nucleosynthesis in stars. Indirect approaches to determining astrophysical reaction rates are increasingly common-place and undergoing continuous refinement. Of particular interest is the use of such indirect techniques at storage rings, which, among other aspects, allow to recycle rare unstable beams. Here, we propose to investigate the reaction rates of astrophysical interest using indirect methods (surrogate, Trojan horse, etc.) in reverse kinematics at the IMP-CAS storage ring. Long lived radioactive ion beams, produced remotely, can be accelerated, and made to interact with light targets. The proposed reactions are 85 Kr(p, p’γ), 85 Kr(d, pγ), constraining the neutron flux in an s-process branching point, 79 Se(p, p’γ), 79 Se(d, pγ), constraining the temperature in s-process nucleosyntheses, and 59 Fe(d, pγ), constraining core collapse supernovae.

Angelis, G. de [National Inst. of Nuclear Physics ↗
NASA NTRS2004

Liquid-Crystal Thermosets, a New Generation of High-Performance Liquid-Crystal Polymers

One of the major challenges for NASA's next-generation reusable-launch-vehicle (RLV) program is the design of a cryogenic lightweight composite fuel tank. Potential matrix resin systems need to exhibit a low coefficient of thermal expansion (CTE), good mechanical strength, and excellent barrier properties at cryogenic temperatures under load. In addition, the resin system needs to be processable by a variety of non-autoclavable techniques, such as vacuum-bag curing, resin-transfer molding (RTM), vacuum-assisted resin-transfer molding (VaRTM), resin-film infusion (RFI), pultrusion, and advanced tow placement (ATP). To meet these requirements, the Advanced Materials and Processing Branch (AMPB) at NASA Langley Research Center developed a new family of wholly aromatic liquid-crystal oligomers that can be processed and thermally cross-linked while maintaining their liquid-crystal order. All the monomers were polymerized in the presence of a cross-linkable unit by use of an environmentally benign melt-condensation technique. This method does not require hazardous solvents, and the only side product is acetic acid. The final product can be obtained as a powder or granulate and has an infinite shelf life. The obtained oligomers melt into a nematic phase and do not exhibit isotropization temperatures greater than the temperatures of decomposition (Ti > T(sub dec)). Three aromatic formulations were designed and tested and included esters, ester-amides, and ester-imides. One of the major advantages of this invention, named LaRC-LCR or Langley Research Center-Liquid Crystal Resin, is the ability to control a variety of resin characteristics, such as melting temperature, viscosity, and the cross-link density of the final part. Depending on the formulation, oligomers can be prepared with melt viscosities in the range of 10-10,000 poise (100 rad/s), which can easily be melt-processed using a variety of composite-processing techniques. This capability provides NASA with custom-made matrix resins that meet the required processing conditions for the fabrication of textile composites. Once the resin is in place, the temperature is raised to 375 C and the oligomers are cross-linked into a high-glass-transition-temperature (Tg) nematic network without releasing volatiles. The mechanical properties of the fully crosslinked, composite articles are comparable to typical composites based on commercially available epoxy resins.

Dingemans, Theo↗
NASA NTRS1996

Welding rework data acquisition and automation

Aluminum-Lithium is a modern material that NASA MSFC is evaluating as an option for the aluminum alloys and other aerospace metals presently in use. The importance of aluminum-lithium is in it's superior weight to strength characteristics. However, aluminum-lithium has produced many challenges in regards to manufacturing and maintenance. The solution to these problems are vital to the future uses of the shuttle for delivering larger payloads into earth orbit and are equally important to future commercial applications of aluminum-lithium. The Metals Processes Branch at MSFC is conducting extensive tests on aluminum-lithium which includes the collection of large amounts of data. This report discusses the automation and data acquisition for two processes: the initial weld and the repair. The new approach reduces the time required to collect the data, increases the accuracy of the data, and eliminates several types of human errors during data collection and entry. The same material properties that enhance the weight to strength characteristics of aluminum-lithium contribute to the problems with cracks occurring during welding, especially during the repair/rework process. The repairs are required to remove flaws or defects discovered in the initial weld, either discovered by x-ray, visual inspection, or some other type of nondestructive evaluation. It has been observed that cracks typically appear as a result of or beyond the second repair. MSFC scientists have determined that residual mechanical stress introduced by the welding process is a primary cause of the cracking. Two obvious solutions are to either prevent or minimize the stress introduced during the welding process, or remove or reduce the stress after the welding process and MSFC is investigating both of these.

Romine, Peter L.↗
DOE OSTI2025

The 22 Ne(α,n) 25 Mg reaction - state of the art, astrophysics, and perspectives

One of the most important stellar neutron sources is the 22 Ne(α,n) 25 Mg reaction, which gets activated both during the helium intershell burning in asymptotic giant branch stars and in core helium and shell carbon burning in massive stars. The 22 Ne(α,n) 25 Mg reaction serves as the main neutron producer for the weak s-process and provides a short but strong neutron exposure during the helium flash phase of the main s-process, significantly affecting the abundances at the s-process branch points. The cross section needs to be known at very low energies, as close as possible to the neutron threshold at E α = 562 keV (Q = −478 keV), but both direct and indirect measurements have turned out to be very challenging, leading to significant uncertainties. Here we discuss the current status of the reaction, including recent and upcoming measurements, and provide a discussion on the astrophysical implications as well as an outlook into the near future.

73 NUCLEAR PHYSICS AND RADIATION PHYSICS↗
DOE OSTI2025

The 22Ne($$\alpha $$,n)25Mg reaction - state of the art, astrophysics, and perspectives

Abstract One of the most important stellar neutron sources is the 22 Ne( $$\alpha ,n$$ α , n ) 25 Mg reaction, which gets activated both during the helium intershell burning in asymptotic giant branch stars and in core helium and shell carbon burning in massive stars. The 22 Ne( $$\alpha ,n$$ α , n ) 25 Mg reaction serves as the main neutron producer for the weak s -process and provides a short but strong neutron exposure during the helium flash phase of the main s -process, significantly affecting the abundances at the s -process branch points. The cross section needs to be known at very low energies, as close as possible to the neutron threshold at $$E_\alpha =$$ E α = 562 keV ( Q = −478 keV), but both direct and indirect measurements have turned out to be very challenging, leading to significant uncertainties. Here we discuss the current status of the reaction, including recent and upcoming measurements, and provide a discussion on the astrophysical implications as well as an outlook into the near future.

73 NUCLEAR PHYSICS AND RADIATION PHYSICS↗
DOE OSTI2023

The s process in massive stars, a benchmark for neutron capture reaction rates

A clear definition of the contribution from the slow neutron-capture process (s process) to the solar abundances between Fe and the Sr-Zr region is a crucial challenge for nuclear astrophysics. Robust s-process predictions are necessary to disentangle the contribution from other stellar processes producing elements in the same mass region. Nuclear uncertainties are affecting s-process calculations, but most of the needed nuclear input are accessible to present nuclear experiments or they will be in the near future. Neutron-capture rates have a great impact on the s process in massive stars, which is a fundamental source for the solar abundances of the lighter s-process elements heavier than Fe (weak s-process component). In this work we present a new nuclear sensitivity study to explore the impact on the s process in massive stars of 86 neutron-capture rates, including all the reactions between C and Si and between Fe and Zr. We derive the impact of the rates at the end of the He-burning core and at the end of the C-burning shell, where the 22 Ne(α,n) 25 Mg reaction is is the main neutron source. We confirm the relevance of the light isotopes capturing neutrons in competition with the Fe seeds as a crucial feature of the s process in massive stars. For heavy isotopes we study the propagation of the neutron-capture uncertainties, finding a clear difference of the impact of Fe and Co isotope rates with respect to the rates of heavier stable isotopes. The local uncertainty propagation due to the neutron-capture rates at the s-process branching points is also considered, discussing the example of 85 Kr. The complete results of our study for all the 86 neutron-capture rates are available online. Finally, we present the impact on the weak s process of the neutron-capture rates included in the new ASTRAL library (v0.2).

79 ASTRONOMY AND ASTROPHYSICS↗
NASA NTRS1979

On the distribution of computation for sequential decoding using the stack algorithm

A method is developed for estimating the computational distribution for the stack algorithm for sequential decoding, that is, the probability that the computation required to decode the first branch of the tree is greater than or equal to N, for small N. The analysis relies heavily on the theory of multitype branching processes. A step in the analysis is the determination of the distribution of the minimum of the cumulative metrics along the transmitted path in the code tree. This is used to obtain the distribution of the number of computations made by the decoder in order to decode the first branch in the tree, and this random variable serves as an approximation of the average number of computations per decoded branch. At information rates below the cutoff rate, the calculated computational performance is virtually identical to that obtained by time-consuming simulations.

Johannesson, R.↗
NASA NTRS1993

Welding process modelling and control

The research and analysis performed, and software developed, and hardware/software recommendations made during 1992 in development of the PC-based data acquisition system for support of Welding Process Modeling and Control is reported. A need was identified by the Metals Processing Branch of NASA Marshall Space Flight Center, for a mobile data aquisition and analysis system, customized for welding measurement and calibration. Several hardware configurations were evaluated and a PC-based system was chosen. The Welding Measurement System (WMS) is a dedicated instrument, strictly for the use of data aquisition and analysis. Although the WMS supports many of the functions associated with the process control, it is not the intention for this system to be used for welding process control.

Romine, Peter L.↗
NASA NTRS1995

Automated data acquisition technology development:Automated modeling and control development

This report documents the completion of, and improvements made to, the software developed for automated data acquisition and automated modeling and control development on the Texas Micro rackmounted PC's. This research was initiated because a need was identified by the Metal Processing Branch of NASA Marshall Space Flight Center for a mobile data acquisition and data analysis system, customized for welding measurement and calibration. Several hardware configurations were evaluated and a PC based system was chosen. The Welding Measurement System (WMS), is a dedicated instrument strickly for use of data acquisition and data analysis. In addition to the data acquisition functions described in this thesis, WMS also supports many functions associated with process control. The hardware and software requirements for an automated acquisition system for welding process parameters, welding equipment checkout, and welding process modeling were determined in 1992. From these recommendations, NASA purchased the necessary hardware and software. The new welding acquisition system is designed to collect welding parameter data and perform analysis to determine the voltage versus current arc-length relationship for VPPA welding. Once the results of this analysis are obtained, they can then be used to develop a RAIL function to control welding startup and shutdown without torch crashing.

Romine, Peter L.↗
DOE OSTI2022

A Note on the Probability of Initiation Problem

The purpose of this note is to draw attention to Pál for his derivation of the Pál-Bell equation which is used by LLNL and LANL to model Probability of Initiation (POI) problems. Both laboratories credit the equation to Bell and Lee. Although the equation formulated by Bell and Lee and the equation derived by Pál appear to be the same, the equation by Bell and Lee is flawed. Scattering, which was absent in Bell’s original formulation of a POI problem, was later introduced by Bell and Lee by replacing a fission term with a scattering term. Such a replacement, however, leads to an incorrect average number $\overline{v}$ of neutrons that is produced in a fission event. By approaching a POI problem from probabilistic point of view, Pál formulates the problem as a branching process that i) describes the growth of a population of neutrons in a fissile medium, and ii) predicts $\overline{v}$ correctly. There are five reasons for writing this report. The first is to clarify the failing in Bell and Lee’s derivation. The second is to establish the origin of the equation used by the laboratories. The third is to elucidate the fixed point technique formulated by Mokhtar-Kharroubi to solve the Pál-Bell equation. The fourth is to derive the α eigenvalue that is associated with a super-critical situation. The fifth is to describe in the Appendix a second order positivity preserving technique that accelerates the convergence of the first order fixed point method developed by Mokhtar-Kharroubi.

73 NUCLEAR PHYSICS AND RADIATION PHYSICS↗
DOE OSTI2022

A Note on the Probability of Initiation Problem

The purpose of this note is to draw attention to Pál’s derivation of the Pál Bell equation which is used by LLNL and LANL to model Probability of Initiation (POI) problems. Both laboratories credit the equation to Bell and Lee. Although the equation formulated by Bell and Lee and the equation derived by Pál appear to be the same, the derivation by Bell and Lee is flawed. Scattering, which was absent in Bell’s original formulation of a POI problem, was later introduced by Bell and Lee by simply replacing a fission term with a scattering term. Such a replacement, however, leads to an inaccurate average number v̅ of neutrons that is produced by a fission event. By approaching a POI problem from probabilistic point of view, Pál formulates the problem as a branching process that determines v̅ correctly. There are six reasons for writing this report. The first is to clarify the failing in Bell and Lee’s derivation. The second is to establish the origin of the equation used by the laboratories. The third is to elucidate the fixed point technique formulated by Mokhtar-Kharroubi for solving the Pál-Bell equation. The fourth is to derive the α eigenvalue that is associated with a time dependent Pál-Bell equation. The fifth is to show in Appendix A that the non-linear fission operator of the Pál-Bell equation is descended from the operator of the Galton-Watson process of stochastic theory. The sixth is to describe in Appendix B a second order positivity preserving technique that accelerates the convergence of the first order fixed point method developed by Mokhtar-Kharroubi.

73 NUCLEAR PHYSICS AND RADIATION PHYSICS↗
DOE OSTI2025

A Python Tool for Reconstructing MCNP6 Particle Histories from an HDF5 PTRAC File [Slides]

A Python tool for converting the MCNP6 HDF5 PTRAC file to a list of Python trees is presented. The particle trees store MCNP6 simulated events for each history using parent-child relationships, which ensures that branching processes are accurately reproduced. A variety of post-processing scripts are presented and used in conjunction with the Python particle trees to make special tallies that are currently not available in the MCNP6 software and visualize the particle tracks.

97 MATHEMATICS AND COMPUTING↗
NASA NTRS1971

Analysis of a document/reporting system

An in-depth analysis of the information system within the Data Processing Branch is presented. Quantitative measures are used to evaluate the efficiency and effectiveness of the information system. It is believed that this is the first documented study which utilizes quantitative measures for full scale system analysis. The quantitative measures and techniques for collecting and qualifying the basic data, as described, are applicable to any information system. Therefore this report is considered to be of interest to any persons concerned with the management design, analysis or evaluation of information systems.

Narrow, B.↗
NASA NTRS1986

The future of earth remote sensing in the US through the Space Station era

This paper reviews the objectives of the Terrestrial Geology Program within NASA. The Geology Program is one of four within the Land Processes Branch of the Office of Space Science and Applications, and complements the Terrestrial Ecosystems, Hydrology and Remote Sensing Science Programs. Examples of science currently being supported by the Geology Program, and new sensor developments are discussed as they lead towards the Space Station Era in the mid-1990's.

Mouginis, P. J.↗
NASA NTRS1988

Advanced altimetry

The radar altimeter being developed for the Ocean Topography Experiment (TOPEX) will have an inherent instrument precision of 2 to 3 cm. While some minor refinements may be possible in the future, major geophysical advances could be made if altimetric measurements over a wide swath of the Earth's surface were possible. The NASA Headquarters Oceanic Processes Branch is supporting a 3-year investigation of the technological issues inherent in the precision measurement of topography from spaceborne platforms at angles off-nadir. To explore the off-nadir measurement of topography, a flexible, airborne radar instrument system is being developed. Its hardware design is now complete, and it is made up of several subsystems. The antenna selected is a dielectric lens of .894 m diameter. The RF subsystem uses phase-locked oscillators, FET solid-state amplifiers, and times four frequency multipliers to develop a transmit signal at a frequency of 36.0 GHz and a local oscillator signal at a frequency of 35.4 GHz. Lecroy 6880 digitizers under computer control digitize the five receiver outputs. The digital subsystem consists of six single-board Heurikon processors. At this time, the instrument construction continues with final system integration planned for November 1988.

Parsons, C. L.↗
NASA NTRS1992

Static assignment of complex stochastic tasks using stochastic majorization

We consider the problem of statically assigning many tasks to a (smaller) system of homogeneous processors, where a task's structure is modeled as a branching process, and all tasks are assumed to have identical behavior. We show how the theory of majorization can be used to obtain a partial order among possible task assignments. Our results show that if the vector of numbers of tasks assigned to each processor under one mapping is majorized by that of another mapping, then the former mapping is better than the latter with respect to a large number of objective functions. In particular, we show how measurements of finishing time, resource utilization, and reliability are all captured by the theory. We also show how the theory may be applied to the problem of partitioning a pool of processors for distribution among parallelizable tasks.

Nicol, David↗