Radiation Chemistry Simulations: Basis and Application to Dosimeters and DNA Damage
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Ianik Plante↗
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Results for “ancient DNA”
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Hematite Is a Mineralogical Marker of Ancient Climate Change on Mars
The ancient climate of Mars changed from warm to cold surface conditions. This climate transition is demonstrated by geomorphological evidence, but lacks suitable mineralogical indicators. We investigate the crystallographic properties of hematite (iron oxide) in Gale crater, measured by the Curiosity rover, and compare them to laboratory experiments. Hematite crystallite sizes are ~5 to ~65 nm in the oldest sedimentary rocks investigated by the rover (the Murray formation) and <10 nm in the younger overlying strata (Mirador and Carolyn Shoemaker formations). We attribute the larger crystallites in the Murray formation to post-depositional coarsening by groundwater in warm and wet conditions, which persisted for several million years. Hematite with small crystallites co-occurs with goethite (iron oxyhydroxide) in the overlying layers, consistent with colder and water- limited conditions.
Marek Szczerba↗
Evidence for Multiple Diagenetic Episodes in Ancient Fluvial‐Lacustrine Sedimentary Rocks in Gale Crater, Mars
The Curiosity rover's exploration of rocks and soils in Gale crater has provided diverse geochemical and mineralogical data sets, underscoring the complex geological history of the region. We report the crystalline, clay mineral, and amorphous phase distributions of four Gale crater rocks from an 80‐m stratigraphic interval. The mineralogy of the four samples is strongly influenced by aqueous alteration processes, including variations in water chemistries, redox, pH, and temperature. Localized hydrothermal events are evidenced by gray hematite and maturation of amorphous SiO 2 to opal‐CT. Low‐temperature diagenetic events are associated with fluctuating lake levels, evaporative events, and ground water infiltration. Among all mudstones analyzed in Gale crater, the diversity in diagenetic processes is primarily captured by the mineralogy and X‐ray amorphous chemistry of the drilled rocks. Variations indicate a transition from magnetite to hematite and an increase in matrix‐associated sulfates suggesting intensifying influence from oxic, diagenetic fluids up section. Furthermore, diagenetic fluid pathways are shown to be strongly affected by unconformities and sedimentary transitions, as evidenced by the intensity of alteration inferred from the mineralogy of sediments sampled adjacent to stratigraphic contacts.
C N Achilles↗
Does the International Space Station Leak DNA? Preliminary Results from the ISS External Microorganisms Payload
Existing crewed spacecraft like the ISS (International Space Station) leak by design. The ISS routinely releases gas to maintain life support systems and when astronauts exit the station to perform space walks. The chemical component of this leakage is well characterized, but the biological components are not. The ISS is not subject to planetary protection requirements, but planned missions to Mars will use similar systems and will be subject to planetary protection requirements. If detectable microorganisms are escaping through vents and or airlocks we may need to redesign our crewed habitats to minimize this type of contamination. To test the hypothesis that microorganisms from inside ISS are detectable on exterior surfaces an astronaut used the ISS External Microorganisms sampling kit (Rucker et al. 2018) to sample exterior surfaces of the ISS during an EVA (Extra Vehicular Activity) in January of 2025. These samples were returned to Earth for DNA extraction and sequencing. We successfully, extracted and sequenced bacterial, fungal and viral DNA from these samples that was not present in the negative controls. These results should help NASA refine the planetary protection requirements for crewed missions. Methods: The samples were collected using sterile, DNA free, buccal swabs (23 mm. diameter) housed in custom canisters. Each canister uses a 0.2 μm Teflon filter to maintain sterility as the caddy, holding 8 swabs moves in and out of vacuum. The astronaut sampled the: 1) airlock vestibule, 2) airlock thermal cover, 3) a gap in the micrometeorite shielding near the airlock, 4) a handrail near the airlock, 5) the Carbon Dioxide Removal Assembly vent, and 6) the Vacuum Exhaust System vent. The seventh swab was exposed to vacuum during the EVA without touching it to a surface. The eighth swab, a negative control, was not opened until the caddy returned to Earth. DNA was extracted from the swabs using a QIamp UCP Pathogen kit and prepared for sequencing on an Aviti (Element Biosciences) sequencer (Arslan et al. 2024). The resulting sequences were analyzed using the EDGE Bioinformatics platform (Li et al. 2017). The sequences were analyzed individually using tools like BLAST, GOTTCHA2, Kraken2, and PanGIA. The data were also assembled into metagenome assembled genomes) using tools like CONCOCT, MaxBin2 and MetaBAT2. Results: We successfully extracted and sequenced bacterial, archaeal, fungal and viral DNA from all seven samples. The handrail swab had the lowest number of reads (768,651) and the airlock thermal cover had the highest number of reads (8,819,230). These samples contain DNA from human associated bacteria (e.g. Crynebacterium riegelii ), fungi (.e.g. Penicillium rubens ), and viruses (e.g Alphapapillomavirus ). Conclusion: Preliminary interpretation suggest that the airlock and the space suits themselves are the largest sources of contaminant DNA. Most if not all of the DNA is from organisms known to be present inside the ISS. Vents attached to life support systems may be a lesser source of biological contamination. Further analysis should help NASA address planetary protection knowledge gaps for crewed missions.
Aaron B Regberg↗
Assembly of catalytic complexes from randomized oligonucleotides
The early evolution of life relied on catalytic RNAs (ribozymes) for central functions. To test whether early catalysts could have assembled from multiple short nucleic acid fragments in random sequence environments, we performed an in vitro selection from a short RNA library in the presence of 256 different DNA 20-nucleotide oligomers. High-throughput sequencing and biochemical analysis showed that most of the selected 1331 RNA sequences required at least one DNA for activity. Representatives for four of six RNA clusters that depended on DNA cofactors were active even when the 256 DNAs were replaced by completely random DNA 20-nucleotide oligomers. The formation of these catalytic complexes and the recruitment of oligonucleotide cofactors from completely random libraries demonstrate an important principle for the emergence of the earliest oligonucleotide catalysts.
Xu Han↗
Diverse organic molecules on Mars revealed by the first SAM TMAH experiment
The search for organic matter on Mars has rapidly evolved in the past decade with simple aromatic, S-heterocycles, and aliphatic organic molecules detected in Gale crater. We report the in situ detection of >20 organic molecules from clay-bearing sandstones in the ~3.5-billion-year-old Knockfarrill Hill member of Glen Torridon, Gale crater, by the Sample Analysis at Mars instrument suite onboard the Curiosity rover. These molecules were liberated by the onboard tetramethylammonium hydroxide wet chemistry experiment. Diverse thermochemolysis products, including benzothiophene, methyl benzoate, and single and dicyclic aromatic molecules were released and detected by evolved gas analysis and gas chromatography-mass spectrometry. Results indicate the experiment successfully released molecules preserved in ancient macromolecular or free organic matter within Martian bedrock despite ~3.5 billion years of diagenesis and radiation exposure.
Amy J Williams↗
Isotopic Evidence for A Cold and Distant Origin of 3I/Atlas
Interstellar objects provide the only directly observable samples of icy planetesimals formed around other stars, and can therefore provide insight into the diversity of physical and chemical conditions occurring during exoplanet formation1−3. Here we report isotopic measurements of the interstellar comet 3I/ATLAS, which reveal an elemental composition unlike any Solar System body. The water in 3I/ATLAS is enriched in deuterium, at a level of D/H = (0.98 ± 0.06)%, which is more than an order of magnitude higher than in known comets, while its range of 12 C/ 13 C ratios (141–191 for CO 2 and 123–172 for CO) exceeds typical values found in the Solar System, as well as nearby interstellar clouds and protoplanetary disks. Such extreme isotopic signatures indicate formation at temperatures ≲ 30 K in a relatively metal-poor environment. When interpreted with respect to models for Galactic chemical evolution, the carbon isotopic composition implies that 3I/ATLAS may have accreted as long ago as 12 billion years, following a period of intense, early star formation. 3I/ATLAS thus represents a preserved fragment of an ancient planetary system.
Martin A Cordiner↗
Magnetic and Dielectric Properties of Lunar Samples
The dielectric properties of lunar soil and rock samples show a systematic character when careful precautions are taken to ensure there is no moisture present during measurement. The dielectric constant (K) above 10 5 Hz is directly dependent on density according to the formula K = (1.93 ± 0.17) p where p is the density in g/cc. The dielectric loss tangent is only slightly dependent on density and has values less than 0.005 for typical soils and 0.005-0.03 for typical rocks. In addition to a density dependence, the loss tangent appears to be directly related to the metallic ilmenite content. These results are in good agreement with the results of the Surface Electrical Properties Experiment carried on Apollo 17. It showed a surface layer of dielectric constant 3.8 and a loss tangent of 0.008. This is presumed to be a layer of compact soil about 7 m thick, overlying a medium with a dielectric constant of roughly 7.5 and a loss tangent interpreted to be 0.035, The medium is presumed to be bedrock. These results are compatible with seismic results. The magnetic properties of lunar samples can be used to study the distribution of metallic and ferrous iron which shows systematic variations from soil-type to soil-type and a general tendency to increasing Fe°/Fe** distribution in the more highly rewelded breccias. The other magnetic characteristics can also be used to determine the distribution of grain sizes. There are a number of ways of interpreting the origin of the stable remanent magnetization in lunar samples, but several lines of evidence suggest that it is of thermal origin and was acquired at a time when the igneous rocks and breccias cooled from above 800°C in the presence of an ancient field.
D W Strangway↗
Hellas, Ken and Me: Adventures in Exhumation and Inundation
Hellas is the largest and deepest basin on Mars. A 1993 study by Moore and Edgett (GRL, 20, 1599-1602) noted that Hellas undergoes net dust erosion. Thus, the exposed surface must represent whatever lag or rock surface and could not be removed by the strong winds blowing at these low elevations. The particle size distributions and particularly the rock or boulder population in this lag was thought to be potentially useful for distinguishing between processes that formed the lithologic units that comprise Hellas Planitia. Earlier studies had suggested the Hellas floor might be paved with basalt or glacial deposits. Ken, who at the time was working with Viking Orbiter IRTM data knew that there were late mission observations of the Hellas floor acquired though clear skies. His derived thermal inertia from these observations strongly suggested that the abundance of particles larger than coarse sand was very low. Hence, our study concluded that the floor deposits were, among other possibilities, ancient loess or lacustrine deposits. In 2001 a subsequent study on the Hellas basin by Moore and Wilhelms (Icarus, 54, 258-276) proposed that the basin was once a site of an ice covered sea, based on a series of circum-basin scarps that follow constant elevations as well as other landforms seen my Mars Global Surveyor’s MOC (an instrument that Ken played a major role in daily operations and data analysis) and topography derived from MOLA. Subsequently the best contiguous observations of the Hellas basin have been acquired from the Mars Reconnaissance Orbiter’s Context Camera, which again Ken has been a central player in its operations. Much of what we know about the grain-scale sedimentology of martian lacustrine deposits comes from the Curiosity Rover’s Mars Hand Lens Imager (which Ken was the PI through development and original operations within Gale crater). Under Ken’s watch several members of the Murray Formation were determined to be deposited in a lacustrine environment. A conclusion strongly demonstrated by MHLI imaging. My personal relationship with Hellas isn’t over. The Europa Clipper flew directly over the Hellas basin including its deepest regions. Ther REASON Ice Penetrating Radar system collected data during this flyby ostensibly for calibration, yet the quality of the observations may yet provide new discoveries from Hellas.
Jeffrey M Moore↗
Nitrile/Buna N Material Failure Assessment for an O-Ring used on the Gaseous Hydrogen Flow Control Valve (FCV) of the Space Shuttle Main Engine
After the rollout of Space Shuttle Discovery in April 2005 in preparation for return-to-flight, there was a failure of the Orbiter (OV-103) helium signature leak test in the gaseous hydrogen (GH2) system. Leakage was attributed to the Flow Control Valve (FCV) in Main Engine 3. The FCV determined to be the source of the leak for OV-103 is designated as LV-58. The nitrile/Buna N rubber O-ring seal was removed from LV-58, and failure analysis indicated radial cracks providing leak paths in one quadrant. Cracks were eventually found in 6 of 9 FCV O-rings among the three Shuttle Orbiters, though none were as severe as those for LV-58, OV-103. Testing by EM10 at MSFC on all 9 FCV O- rings included: laser dimensional, Shore A hardness and properties from a dynamic mechanical analyzer (DMA) and an Instron tensile machine. The following test data was obtained on the cracked quadrant of the LV-58, OV-103 O-ring: (1) the estimated compression set was only 9.5%, compared to none for the rest of the O-ring; (2) Shore A hardness for the O.D. was higher by almost 4 durometer points than for the rest of the O-ring; and (3) DMA data showed that the storage/elastic modulus E was almost 25% lower than for the rest of the O-ring. Of the 8 FCV O-rings tested on an Instron, 4 yielded tensile strengths that were below the MIL spec requirement of 1350 psi-a likely influence of rubber cracking. Comparisons were made between values of modulus determined by DNA (elastic) and Instron (Young s). Each nitrile/Buna N O-ring used in the FCV conforms to the MIL-P-25732C specification. A number of such O-rings taken from shelf storage at MSFC and Kennedy Space Center (KSC) were used to generate a reference curve of DMA glass transition temperature (Tg) vs. shelf storage time ranging from 8 to 26 years. A similar reference curve of TGA onset temperature (of rubber weight loss) vs. shelf storage time was also generated. The DMA and TGA data for the used FCV O-rings were compared to the reference curves. Correlations were also made between the DMA modulus (at 22 C) and Shore A hardness for all 9 of the FCV O-rings used among the three Shuttle Orbiters. The radial cracking in the FCV O-rings was determined to be due to ozone attack, as nitrile/Buna N rubber is susceptible to such attack. Nitrile/Buna N material under MIL-P25732C should be used in a hydraulic fluid environment to help protect it from cracking. However, the FCV O-rings were used in an air only environment. The FCV design has as much as a 9-mil gap that allows the O.D. of the O-ring to be directly exposed to ozone, pressurized air and some elevated temperatures, accelerating the weathering process that leads to O-ring cracking. Space Shuttle flights will likely not continue past 2010. Therefore, Shuttle management decided to continue using the nitrile/Buna N material for the FCVs, but have each O-ring replaced after 3 years to minimize any chances for crack initiation.
Doug Wingard↗