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Search indexed NASA NTRS and DOE OSTI research on propulsion, heat transfer, battery materials and energy systems. Follow report and document links to the original sources.

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At least 19 records
All sourcesNASA NTRSDOE OSTI
DOE OSTI2020

Optical phase conjugation in backward Raman amplification

Compression of an intense laser pulse using backward Raman amplification (BRA) in plasma, followed by vacuum focusing to a small spot size, can produce unprecedented ultrarelativistic laser intensities. The plasma density inhomogeneity during BRA, however, causes laser phase and amplitude distortions, limiting the pulse focusability. To solve the issue of distortion, we investigate the use of optical phase conjugation as the seed pulse for BRA. We show that the phase conjugated laser pulses can retain focusability in the nonlinear pump depletion regime of BRA, but not so easily in the linear amplification regime. This somewhat counterintuitive result is because the nonlinear pump depletion regime features a shorter amplification distance, and hence less phase distortion due to wave–wave interaction, than the linear amplification regime.

Jia, Qing↗
DOE OSTI2018

Amplification and adaptation of centromeric repeats in polyploid switchgrass species

Centromeres in most higher eukaryotes are composed of long arrays of satellite repeats from a single satellite repeat family. Why centromeres are dominated by a single satellite repeat and how the satellite repeats originate and evolve are among the most intriguing and long-standing questions in centromere biology. We identified eight satellite repeats in the centromeres of tetraploid switchgrass (Panicum virgatum). Seven repeats showed characteristics associated with classical centromeric repeats with monomeric lengths ranging from 166 to 187 bp. Interestingly, these repeats share an 80-bp DNA motif. We demonstrate that this 80-bp motif may dictate translational and rotational phasing of the centromeric repeats with the cenH3 nucleosomes. The sequence of the last centromeric repeat, Pv156, is identical to the 5S ribosomal RNA genes. We demonstrate that a 5S ribosomal RNA gene array was recruited to be the functional centromere for one of the switchgrass chromosomes. Our findings reveal that certain types of satellite repeats, which are associated with unique sequence features and are composed of monomers in mono-nucleosomal length, are favorable for centromeres. Centromeric repeats may undergo dynamic amplification and adaptation before the centromeres in the same species become dominated by the best adapted satellite repeat.

59 BASIC BIOLOGICAL SCIENCES↗
DOE OSTI2014

Dynamics and control of DNA sequence amplification

DNA amplification is the process of replication of a specified DNA sequence in vitro through time-dependent manipulation of its external environment. A theoretical framework for determination of the optimal dynamic operating conditions of DNA amplification reactions, for any specified amplification objective, is presented based on first-principles biophysical modeling and control theory. Amplification of DNA is formulated as a problem in control theory with optimal solutions that can differ considerably from strategies typically used in practice. Using the Polymerase Chain Reaction as an example, sequence-dependent biophysical models for DNA amplification are cast as control systems, wherein the dynamics of the reaction are controlled by a manipulated input variable. Using these control systems, we demonstrate that there exists an optimal temperature cycling strategy for geometric amplification of any DNA sequence and formulate optimal control problems that can be used to derive the optimal temperature profile. Strategies for the optimal synthesis of the DNA amplification control trajectory are proposed. Analogous methods can be used to formulate control problems for more advanced amplification objectives corresponding to the design of new types of DNA amplification reactions.

37 INORGANIC, ORGANIC, PHYSICAL, AND ANALYTICAL CH↗
DOE OSTI2020

New criteria for efficient Raman and Brillouin amplification of laser beams in plasma

Raman or Brillouin amplification of a laser beam in plasma has long been seen as a way to reach multi-PW powers in compact laser systems. However, no significant plasma-based Raman amplification of a laser pulse beyond 0.1 TW has been achieved in nearly 20 years, and only one report of Brillouin amplification beyond 1 TW. In this paper, we reveal novel non-linear criteria for the initial seed pulse that will finally open the door to efficient Raman and Brillouin amplification to petawatt powers and Joule-level energies. We show that the triple product of the coupling constant \(\Gamma \) , seed pulse duration \(\tau \) and seed pulse amplitude a for the Raman seed pulse (or \(a^{2/3}\) for Brillouin) must exceed a specific minimum threshold for efficient amplification. We also analyze the plasma-based Raman and Brillouin amplification experiments to date, and show that the seed pulses used in nearly all experiments are well below our new threshold, which explains the poor efficiency obtained in them. Finally, we analyze a recent Brillouin amplification experiment that used increased seed pulse power to obtain Joule-level amplification, and find excellent agreement with our theory.

70 PLASMA PHYSICS AND FUSION TECHNOLOGY↗
DOE OSTI2025

Mid-latitude clouds contribute to Arctic amplification via interactions with other climate feedbacks

Abstract Traditional feedback analyses, which assume that individual climate feedback mechanisms act independently and add linearly, suggest that clouds do not contribute to Arctic amplification. However, feedback locking experiments, in which the cloud feedback is disabled, suggest that clouds, particularly outside of the Arctic, do contribute to Arctic amplification. Here, we reconcile these two perspectives by introducing a framework that quantifies the interactions between radiative feedbacks, radiative forcing, ocean heat uptake, and atmospheric heat transport. We show that including the cloud feedback in a comprehensive climate model can result in Arctic amplification because of interactions with other radiative feedbacks. The surface temperature change associated with including the cloud feedback is amplified in the Arctic by the surface-albedo, Planck, and lapse-rate feedbacks. A moist energy balance model with a locked cloud feedback exhibits similar behavior as the comprehensive climate model with a disabled cloud feedback and further indicates that the mid-latitude cloud feedback contributes to Arctic amplification via feedback interactions. Feedback locking in the moist energy balance model also suggests that the mid-latitude cloud feedback contributes substantially to the intermodel spread in Arctic amplification across comprehensive climate models. These results imply that constraining the mid-latitude cloud feedback will greatly reduce the intermodel spread in Arctic amplification. Furthermore, these results highlight a previously unrecognized non-local pathway for Arctic amplification.

58 GEOSCIENCES↗
NASA NTRS2021

Quantifying the role of ocean coupling in Arctic amplification and sea-ice loss over the 21st century

The enhanced warming of the Arctic, relative to other parts of the Earth, a phenomenon known as Arctic amplification, is one of the most striking features of climate change, and has important climatic impacts for the entire Northern Hemisphere. Several mechanisms are believed to be responsible for Arctic amplification; however, a quantitative understanding of their relative importance is still missing. Here, using ensembles of model integrations, we quantify the contribution of ocean coupling, both its thermodynamic and dynamic components, to Arctic amplification over the 20th and 21st centuries. We show that ocean coupling accounts for ~80% of the amplification by 2100. In particular, we show that thermodynamic coupling is responsible for future amplification and sea-ice loss as it overcomes the effect of dynamic coupling which reduces the amplification and sea-ice loss by ~35%. Our results demonstrate the utility of targeted numerical experiments to quantify the role of specific mechanisms in Arctic amplification, for better constraining climate projections.

Ocean heat transport↗
DOE OSTI2014

Increased centrosome amplification in aged stem cells of the Drosophila midgut

Highlights: • Increased centrosome amplification in ISCs of aged Drosophila midguts. • Increased centrosome amplification in ISCs of oxidative stressed Drosophila midguts. • Increased centrosome amplification in ISCs by overexpression of PVR, EGFR, and AKT. • Supernumerary centrosomes can be responsible for abnormal ISC polyploid cells. • Supernumerary centrosomes can be a useful marker for aging stem cells. - Abstract: Age-related changes in long-lived tissue-resident stem cells may be tightly linked to aging and age-related diseases such as cancer. Centrosomes play key roles in cell proliferation, differentiation and migration. Supernumerary centrosomes are known to be an early event in tumorigenesis and senescence. However, the age-related changes of centrosome duplication in tissue-resident stem cells in vivo remain unknown. Here, using anti-γ-tubulin and anti-PH3, we analyzed mitotic intestinal stem cells with supernumerary centrosomes in the adult Drosophila midgut, which may be a versatile model system for stem cell biology. The results showed increased centrosome amplification in intestinal stem cells of aged and oxidatively stressed Drosophila midguts. Increased centrosome amplification was detected by overexpression of PVR, EGFR, and AKT in intestinal stem cells/enteroblasts, known to mimic age-related changes including hyperproliferation of intestinal stem cells and hyperplasia in the midgut. Our data show the first direct evidence for the age-related increase of centrosome amplification in intestinal stem cells and suggest that the Drosophila midgut is an excellent model for studying molecular mechanisms underlying centrosome amplification in aging adult stem cells in vivo.

60 APPLIED LIFE SCIENCES↗
DOE OSTI2025

Analysis of Seismic Wave Amplification in Sedimentary Basins Using 3D Wavefield Simulations: Nenana Basin, Central Alaska

We investigate seismic wave amplification in Nenana basin, central Alaska, using 3D seismic wavefield simulations. We quantify frequency-dependent amplification by comparing synthetic seismograms among four different seismic velocity models: (a) a tomographic model, (b) a tomographic model with the uppermost 6.5 km replaced by a 1D basin profile, (c) a tomographic model with an embedded ellipsoidal basin, and (d) a tomographic model with an embedded realistic basin. For each model we perform wavefield simulations accurate up to 2 Hz for a set of 10 different earthquakes, which provide a range of frequencies and incident angles for waves interacting with the basin. Average amplification ratios are four on the horizontal components and seven on the vertical component. The dominant influence of the amplification is the 3D geometry of the basin, not the slow-velocity profile near the surface. Our synthetic amplification ratios are in general agreement with amplification estimates obtained from 14 stations that recorded the same set of earthquakes. Our approach offers a general strategy for documenting frequency-dependent basin amplification for a region with realistic basin structures and local earthquakes.

Geosciences↗
DOE OSTI2016

Digital droplet multiple displacement amplification (ddMDA) for whole genome sequencing of limited DNA samples

Here, multiple displacement amplification (MDA) is a widely used technique for amplification of DNA from samples containing limited amounts of DNA (e.g., uncultivable microbes or clinical samples) before whole genome sequencing. Despite its advantages of high yield and fidelity, it suffers from high amplification bias and non-specific amplification when amplifying sub-nanogram of template DNA. Here, we present a microfluidic digital droplet MDA (ddMDA) technique where partitioning of the template DNA into thousands of sub-nanoliter droplets, each containing a small number of DNA fragments, greatly reduces the competition among DNA fragments for primers and polymerase thereby greatly reducing amplification bias. Consequently, the ddMDA approach enabled a more uniform coverage of amplification over the entire length of the genome, with significantly lower bias and non-specific amplification than conventional MDA. For a sample containing 0.1 pg/μL of E. coli DNA (equivalent of ~3/1000 of an E. coli genome per droplet), ddMDA achieves a 65-fold increase in coverage in de novo assembly, and more than 20-fold increase in specificity (percentage of reads mapping to E. coli) compared to the conventional tube MDA. ddMDA offers a powerful method useful for many applications including medical diagnostics, forensics, and environmental microbiology.

59 BASIC BIOLOGICAL SCIENCES↗
DOE OSTI2015

Control of Brillouin short-pulse seed amplification by chirping the pump pulse

Seed amplification via Brillouin backscattering of a long pump pulse is considered. Similar to Raman amplification, several obstructive effects may occur during short-pulse Brillouin amplification. One is the spontaneous Raman backscattering of the pump before interacting with the seed. Preforming the plasma and/or chirping the pump will reduce unwanted pump backscattering. Optimized regions for low-loss pump propagation were proposed already in conjunction with Raman seed amplification. Hence, the influence of the chirp of the pump during Brillouin interaction with the seed becomes important and will be considered here. Both, the linear as well as the nonlinear evolution phases of the seed caused by Brillouin amplification under the action of a chirped pump are investigated. The amplification rate as well as the seed profiles are presented as function of the chirping rate. Also the dependence of superradiant scaling rates on the chirp parameter is discussed.

70 PLASMA PHYSICS AND FUSION TECHNOLOGY↗
DOE OSTI2015

Amplification of a seed pumped by a chirped laser in the strong coupling Brillouin regime

Seed amplification via Brillouin backscattering of a long pump laser-pulse is considered. The interaction takes place in the so called strong coupling regime. Pump chirping is applied to mitigate spontaneous Raman backscattering of the pump before interacting with the seed. The strong coupling regime facilitates stronger exponential growth and narrower seeds compared to the so called weak coupling regime, although in the latter the scaling with pump amplitude is stronger. Strong coupling is achieved when the pump laser amplitude exceeds a certain threshold. It is shown how the chirp influences both the linear as well as the nonlinear amplification process. First, linear amplification as well as the seed profiles are determined in dependence of the chirping rate. In contrast to the weak coupling situation, the evolution is not symmetric with respect to the sign of the chirping rate. In the nonlinear stage of the amplification, we find an intrinsic chirp of the seed pulse even for an un-chirped pump. We show that chirping the pump may have a strong influence on the shape of the seed in the nonlinear amplification phase. Also, the influence of pump chirp on the efficiency of Brillouin seed amplification is discussed.

70 PLASMA PHYSICS AND FUSION TECHNOLOGY↗
DOE OSTI2017

Beam cleaning of an incoherent laser via plasma Raman amplification

We show that backward Raman amplification in plasma can efficiently compress a temporally incoherent pump laser into an intense coherent amplified seed pulse, provided that the correlation time of the pump is longer than the inverse plasma frequency. One analytical theory for Raman amplification using pump beams with different correlation functions is developed and compared to numerical calculations and particle-in-cell simulations. Since incoherence on scales shorter than the instability growth time suppresses spontaneous noise amplification, we point out a broad regime where quasi-coherent sources may be used as efficient low-noise Raman amplification pumps. As the amplified seed is coherent, Raman amplification provides an additional a beam-cleaning mechanism for removing incoherence. At near-infrared wavelengths, finite coherence times as short as 50 fs allow amplification with only minor losses in efficiency.

70 PLASMA PHYSICS AND FUSION TECHNOLOGY↗