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Network of networks: Time series clustering of AmeriFlux sites

Environmental observation networks, such as AmeriFlux, are foundational for monitoring ecosystem response to climate change, management practices, and natural disturbances; however, their effectiveness depends on their representativeness for the regions or continents. We proposed an empirical, time series approach to quantify the similarity of ecosystem fluxes across AmeriFlux sites. We extracted the diel and seasonal characteristics (i.e., amplitudes, phases) from carbon dioxide, water vapor, energy, and momentum fluxes, which reflect the effects of climate, plant phenology, and ecophysiology on the observations, and explored the potential aggregations of AmeriFlux sites through hierarchical clustering. While net radiation and temperature showed latitudinal clustering as expected, flux variables revealed a more uneven clustering with many small (number of sites < 5), unique groups and a few large (> 100) to intermediate (15–70) groups, highlighting the significant ecological regulations of ecosystem fluxes. Many identified unique groups were from under-sampled ecoregions and biome types of the International Geosphere-Biosphere Programme (IGBP), with distinct flux dynamics compared to the rest of the network. At the finer spatial scale, local topography, disturbance, management, edaphic, and hydrological regimes further enlarge the difference in flux dynamics within the groups. Nonetheless, our clustering approach is a data-driven method to interpret the AmeriFlux network, informing future cross-site syntheses, upscaling, and model-data benchmarking research. Finally, we highlighted the unique and underrepresented sites in the AmeriFlux network, which were found mainly in Hawaii and Latin America, mountains, and at under-sampled IGBP types (e.g., urban, open water), motivating the incorporation of new/unregistered sites from these groups.

54 ENVIRONMENTAL SCIENCES

A tale of two towers: comparing NEON and AmeriFlux data streams at Bartlett Experimental Forest

Long-term ecological data are essential for detecting impacts of climate change and other global change factors, and for making informed predictions about future change. However, long-term measurements are rarely replicated at the site level, which raises questions about their representativeness. We used a multiscale approach to evaluate the agreement of parallel observations from AmeriFlux and NEON (National Ecological Observatory Network) towers at Bartlett Experimental Forest, New Hampshire, USA. The two towers are separated by a horizontal distance of 93 m. Here, we focused our analysis on standard meteorological variables; fluxes of CO 2 , sensible heat, and latent heat measured by eddy covariance; and phenology derived from PhenoCam imagery. Results suggest excellent agreement between AmeriFlux and NEON in meteorology and phenology, and good agreement in fluxes at the half-hourly scale. However, large disagreements in CO 2 and latent heat fluxes occurred at the annual scale, with implications especially for the forest carbon balance. The AmeriFlux tower measurements indicate a site that is close to carbon-neutral (-8 ± 65 g C m -2 y -1 , mean ± 1 SD), whereas the NEON tower measurements indicate a forest that is a carbon sink (-137 ± 10 g C m -2 y -1 ). Causes of this disagreement may include measurement height (26 m vs. 35 m), which resulted in different flux footprints being measured by the two towers, and differences in the flux measurement systems. Our results suggest the need for caution when attempting to merge long-term flux data from two different measurement platforms, and when using measurements from any one measurement platform to inform decision-making on issues related to carbon accounting or natural climate solutions.

Carbon cycle

GNSS-based Vegetation Optical Depth, Tree Sway, and Evapotranspiration data from the Niwot Ridge Subalpine Forest (US-NR1) AmeriFlux site

This data package contains data and information about Global Navigation Satellite System (GNSS)-based Vegetation Optical Depth (VOD), tree sway motion, and eddy-covariance evapotranspiration (ET) data collected at the Niwot Ridge Subalpine Forest AmeriFlux site (US-NR1). The raw GNSS data were collected between May 2022 and August 2023. Other processed datasets such as tree sway motion and ET data are also included. The goal was to study the water content within a subalpine forest and, more specifically, examine the canopy evaporation process. This data archive includes all data that were used within the following Biogeosciences discussion paper that further summarizes the research objectives and conclusions:Burns, S.P., V. Humphrey, E.D. Gutmann, M.S. Raleigh, D.R. Bowling, and P.D. Blanken, 2025: Using GNSS-based vegetation optical depth, tree sway motion, and eddy-covariance to examine evaporation of canopy-intercepted rainfall in a subalpine forest. EGUsphere [preprint],https://doi.org/10.5194/egusphere-2025-1755This data archive also supplements the 30-min Lawrence Berkeley National Laboratory (LBNL) AmeriFlux dataset for US-NR1 (i.e., https://doi.org/10.17190/AMF/1246088) and updates what was in the 2020 ESS-DIVE US-NR1 archive (https://doi.org/10.15485/1671825) to include data from the years 2020-2025. More specifically, the following updates are provided: (i) five-minute statistics (means, variances, covariances) of all data measured by the US-NR1 data system between Sep 2020 and Jun 2025 in netCDF format, (ii) the electronic logbook of US-NR1 site visits, (iii) a web calendar (in HTML format) documenting activity at the site (a replica of https://urquell.colorado.edu/calendar/), (iv) photos taken at the site between years 2020 and present day (Aug 2025), and (v) several auxiliary datasets, primary related to trees near the site, soil properties, soil moisture and soil temperature, and subcanopy radiation data. The data package is setup so that the web calendar, photos, and electronic logbook can be easily accessed on a local computer using a web browser. The provided data files are in either BINEX or SBF format (for the raw GNSS data), netCDF, CSV, ASCII, or MATLAB format. To obtain a better understanding about the archive, please start by reading the following PDF which is included within the data archive:README_ESS_DIVE_USNR1_2025_readme_first.pdf.

54 ENVIRONMENTAL SCIENCES

AmeriFlux FLUXNET-1F US-GL1 Stannard Rock

This is the AmeriFlux Management Project (AMP) created FLUXNET-1F version of the carbon flux data for the site US-GL1 Stannard Rock. This is the FLUXNET version of the carbon flux data for the site US-GL1 Stannard Rock produced by applying the standard ONEFlux (1F) software. Site Description - Stannard Rock is located 39 km from the nearest shore (Keweenaw Peninsula) in Lake Superior, 44 miles NNE of Marquette, Michigan, and 24 miles ESE of Manitou Island. The site is located on the historic Stannard Rock Lighthouse, which was completed in 1882. Eddy covariance instrumentation was installed in 2008 by a network of scientists from both US and Canada, eventually to be called the Great Lakes Evaporation Network (GLEN). The intent of GLEN has been to provide observations of over-lake meteorology and evaporation, improve forecasting of Great Lakes water levels, and support a wide variety of stakeholders, including the National Weather Service (NWS), Environment and Climate Change Canada, National Oceanic and Atmospheric Administration, U.S. Coast Guard, recreational boaters and commercial shipping, emergency management officials, and the Great Lakes research community. The eddy covariance station along with other ancillary meteorological instrumentation is located at an approximate elevation of 39.2 meters above mean lake water level. Meteorological data from the lighthouse are sent to the National Data Buoy Center, where they can be viewed in real-time at http://www.ndbc.noaa.gov/station_page.php?station=stdm4 Uncorrected half-hour fluxes were computed directly on the logger using a 30-minute block averaging period as high-frequency data were not available. The half hour flux measurements downloaded from the datalogger were post-processed with the following filters and corrections. Latent and sensible heat and carbon dioxide fluxes were corrected with 2-D coordinate rotation. Although the primary objective of data collection at Stannard Rock was to quantify the evaporative flux, additional preliminary measurements of the carbon dioxide concentration and flux from the LI-7500 are also included in this dataset but it is advised to use the carbon data with caution. Carbon data reported in this dataset includes turbulent fluxes of CO2 with no storage correction (FC, µmol m-2 s-1) and CO2 density in mole fraction of wet air (CO2), which was originally output on the datalogger as average CO2 density (mg m-2 s-1) and converted into µmol mol-1 using air temperature and pressure in post-processing. Webb, Pearman, and Leuning terms were applied to account for density fluctuations for water vapor and CO2. Sonic path length, high-frequency attenuation and sensor separation were accounted for according to Horst and Massman, and the oxygen absorption correction for the KH2O hygrometer was also applied. Latent and sensible heat fluxes were assumed to be unrealistic above an absolute value of 1000 W m-2 and were removed. Both carbon flux (FC) and carbon dioxide mole fraction in wet air (CO2) and were assumed to be unrealistic above 1000 µmol m-2 s-1 and 1000 µmol mol-1 respectively. Spikes in latent and sensible heat and carbon fluxes and densities (often due to periods of precipitation) were identified by computing the mean and standard deviation over a moving, overlapping window of 336 half-hours (7 days), similar to Shao et al., and were removed when the flux was more than 1.5 standard deviations from the moving window’s mean. While Vickers and Mahrt use a threshold of 3.5 standard deviations from the mean, a conservative value of 1.5 was chosen due to the noisy nature of over-lake data at this particular site. This process was repeated twice for latent and sensible heat, and carbon dioxide fluxes and densities and therefore it is possible that some real, realistic data was filtered out in this process. No detrending was performed. As per AmeriFlux standards, no friction velocity (USTAR, m s-1) filtering was performed.

Spence, Chris [Environment and Climate Change Cana

Incorporating Ameriflux Data into LVT

This paper describes a new generic data reader that was developed in Fortran to handle the Ameriflux data for the LIS Verification Toolkit (LVT). Researchers at the Hydrological Sciences Branch of NASA Goddard Space Flight Center have created a high resolution land surface modeling and data assimilation system known as the Land Information System (LIS), which provides an infrastructure to integrate state-of-the-art land surface models, data assimilation algorithms, observations of land surface from satellite and remotely sensed platforms to provide estimates of land surface conditions such as soil moisture, evaporation, snowpack and runoff. These model predictions are typically evaluated by comparing them with data from observational networks. The observational data; however, are usually available in disparate data formats and require significant effort to process them into a structure amenable for use with the model data. The motivation to develop a uniform approach for land surface verification as a way to alleviate these processing efforts has led to the development of LVT which is designed to enable the rapid evaluation of land surface modeling and analysis products from LIS. LVT focuses on the use of observational datasets in their native format. As the formats of these datasets vary widely, a major part of LVT is creating programs to read and process the native datasets. The primary goal of this project is to enhance LVT capabilities by incorporating observational datasets from Ameriflux

Georgiev, Teodor

Gap-filled methane and carbon dioxide fluxes across two ecosystem states at the US-OWC AmeriFlux site (2015−2016, 2020−2022)

This dataset contains gap-filled measurements of methane flux (FCH4), net ecosystem CO2 exchange (NEE) partitioned into gross primary productivity (GPP) and ecosystem respiration (RE), as well as latent heat flux (LE) from a Great Lakes coastal freshwater wetland at the US-OWC AmeriFlux site. The dataset covers the peak growing seasons (June−September) of 2015−2016, dominated by Typha spp., and 2020−2022, characterized by floating-leaved species (lotus and water lily). These data were generated to investigate how rising water levels and vegetation shifts influence CH4 and CO2 fluxes across two distinct ecosystem states in this wetland. The dataset, provided in CSV format, includes half-hourly gap-filled flux data from June to September for 2015, 2016, 2020, 2021, and 2022. The gap-filled data refers to measurements where missing values due to instrument issues or quality control were filled using artificial neural networks (ANNs).

54 ENVIRONMENTAL SCIENCES

AmeriFlux FLUXNET-1F US-SRM Santa Rita Mesquite

This is the AmeriFlux Management Project (AMP) created FLUXNET-1F version of the carbon flux data for the site US-SRM Santa Rita Mesquite. This is the FLUXNET version of the carbon flux data for the site US-SRM Santa Rita Mesquite produced by applying the standard ONEFlux (1F) software. Site Description - Semidesert grassland encroached by mesquite (Prosopis velutina) trees. Please see Scott et al. 2009 JGR-Biogeo, 114, G04004

Scott, Russell

AmeriFlux CA-AF1 Acadia Research Forest

This is the AmeriFlux version of the carbon flux data for the site CA-AF1 Acadia Research Forest. Site Description - The site is located in the Acadia Research Forest (managed by the Canadian Forest Service). The research forest is representative of the Acadian Forest Region in New Brunswick and Nova Scotia and comprises of mixed forest containing softwood, hardwood, and mixed-wood stands. The forest is managed and features different forest composition depending on management history.

Helbig, Manuel [Dalhousie University]

AmeriFlux US-EKH Elkhorn Slough Hester Marsh

This is the AmeriFlux version of the carbon flux data for the site US-EKH Elkhorn Slough Hester Marsh. Site Description - Salt marsh restored in 2018 by adding soil to raise 61 acres of former salt marsh to an elevation that allows marsh plants to return and keep pace with projected sea level rise. Marsh is mostly bare soil and tidal channels. Marsh is flooded and drained diurnally.

Paytan, Adina [University of California, Santa Cru

AmeriFlux US-EKP Elkhorn Slough Porter Marsh

This is the AmeriFlux version of the carbon flux data for the site US-EKP Elkhorn Slough Porter Marsh. Site Description - Tidally restricted amd diked salt marsh. Berm and Islands with picklweek, cut by mudlats and an ephemeral creek.

Paytan, Adina [University of California, Santa Cru

AmeriFlux US-UTM UFLUX Matheson

This is the AmeriFlux version of the carbon flux data for the site US-UTM UFLUX Matheson. Site Description - This station is located in a wetland, surrounded by bulrushes

Ladig, Kathryn [Utah Geological Survey]

AmeriFlux US-UTW UFLUX Wellington

This is the AmeriFlux version of the carbon flux data for the site US-UTW UFLUX Wellington. Site Description - This station is located between two large pivots that irrigate alfalpha. The pivots are in line with the predominant wind direction. The farm is no-till and uses canal water to irrigate. The field is grazed by cattle in the early winter.

Ladig, Kathryn [Utah Geological Survey]

AmeriFlux US-YNS North Star Yedoma

This is the AmeriFlux version of the carbon flux data for the site US-YNS North Star Yedoma. Site Description - Dry hillslope underlain by ice rich permafrost and now covered with native grasses and managed as a rustic golf course. The land clearing performed decades ago has caused permafrost thawing, surface subsidence, and development of thermokarst mounds or baidjarahks. No foreign fill materials, pesticides or fertilizers have been used, and the area is not irrigated. The area outside the flux footprint is second growth deciduous forest with similar soil conditions.

Anthony, Katey Walter [University of Alaska Fairba

AmeriFlux US-A37 ARM-SGP-Waukomis

This is the AmeriFlux version of the carbon flux data for the site US-A37 ARM-SGP-Waukomis. Site Description - The E37 site is located in the middle of a grassy field with a cultivated field to the South, near Waukomis, Oklahoma.

Sullivan, Ryan [Argonne National Laboratory]

AmeriFlux CA-Mtk Mittimatalik (Pond Inlet) Tundra

This is the AmeriFlux version of the carbon flux data for the site CA-Mtk Mittimatalik (Pond Inlet) Tundra. Site Description - Mesic to dry tundra with dwarf shrubs, grasses, forbs, and moss vegitation. Thin organic soil layer of 10 cm with sandy soils.

Arndt, Kyle [Woodwell Climate Research Center]

AmeriFlux US-AMS Argonne Testbed for Multiscale Observational Science (ATMOS)

This is the AmeriFlux version of the carbon flux data for the site US-AMS Argonne Testbed for Multiscale Observational Science (ATMOS). Site Description - This tower is located at Argonne National Laboratory approximately 2 km north of the Des Plaines river and 115 m NNW from the ATMOS meteorological tower. It is downwind of a seasonally wet grassland bordered by forest 40 m N of the flux tower. The area was managed by controlled burns until 2019.

McNicol, Gavin [University of Illinois at Chicago]

AmeriFlux US-CU1 UIC Plant Research Laboratory Chicago

This is the AmeriFlux version of the carbon flux data for the site US-CU1 UIC Plant Research Laboratory Chicago. Site Description - The UIC Science and Engineering South building is located in Chicago, Illinois. It is situated near the UIC Plant Research Laboratory, a facility with a greenhouse, outdoor garden space, and open lawn areas and is close to a major highway, with several nearby structures and parking areas.

Raut, Bhupendra [Argonne National Laboratory]

AmeriFlux US-EKN Elkhorn Slough North Marsh

This is the AmeriFlux version of the carbon flux data for the site US-EKN Elkhorn Slough North Marsh. Site Description - Tidally restricted and diked salt marsh. Large water-filled basin with picklweek around the edges. Algal eutrophication and anerobic signal.

Paytan, Adina [University of California, Santa Cru