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Primer: Physical Factors of Agricultural Production & Climate Change

This white paper is a primer on physical factors that influence agricultural production and associated touchpoints to climate change. Agricultural production (which includes both crop and livestock production) is critical for food security and supports other economic products, such as textiles and generation of fuels for energy. Various physical factors influence agricultural production, including the crop types being cultivated and livestock being raised; land area and quality; water access and control; fertilizers, pesticides, and antibiotics; labor; and infrastructure associated with processing, storage, and transportation. These factors are impacted by climate change in both chronic and acute ways, from changing temperatures and precipitation patterns to increased prevalence of extreme events and diseases. We draw on examples from around the world to show the complex ways that agricultural production factors and climate interact with local capacities to influence regions around the world.

54 ENVIRONMENTAL SCIENCES↗

Climate-Related Indices for Agricultural Production

This document summarizes common indices used to characterize climate-related impacts to agricultural production. In particular, we consider indices for three phenomena: 1) drought, 2) growing period, and 3) heat stress (Table 1). It should be noted that these indices are far from exhaustive. Instead, they reflect common concerns related to production of agriculture that are emerging across multiple regions (Gunda et al., 2024). Other indices such as rate of return (Shand et al., 2024) can also be leveraged to support agriculture-related climate analyses as well.

54 ENVIRONMENTAL SCIENCES↗

Crop models: integrating systems from the molecular to global for agricultural productivity and sustainability

Mathematical models that simulate crop growth in response to environmental conditions and management practices are essential tools for exploring agriculture-based strategies to address food security and environmental sustainability challenges. Early applications of crop models focused on supporting farmers in making management decisions. Applications have since expanded to estimating future impacts on local and global food production from changing climates. Emerging applications of crop models aim to leverage how these models integrate plant processes across biological scales to identify engineering or breeding strategies that account for environmentally-responsive dynamics at field scales and for exploring solutions to improve sustainability. In this review, we highlight recent studies across these four broad application areas and highlight potential future directions for the crop modeling field.

Piao, Ximin [Univ. of Illinois at Urbana-Champaign↗

Transforming Agricultural Productivity with AI-Driven Forecasting: Innovations in Food Security and Supply Chain Optimization

Global food security is under significant threat from climate change, population growth, and resource scarcity. This review examines how advanced AI-driven forecasting models, including machine learning (ML), deep learning (DL), and time-series forecasting models like SARIMA/ARIMA, are transforming regional agricultural practices and food supply chains. Through the integration of Internet of Things (IoT), remote sensing, and blockchain technologies, these models facilitate the real-time monitoring of crop growth, resource allocation, and market dynamics, enhancing decision making and sustainability. The study adopts a mixed-methods approach, including systematic literature analysis and regional case studies. Highlights include AI-driven yield forecasting in European hydroponic systems and resource optimization in southeast Asian aquaponics, showcasing localized efficiency gains. Furthermore, AI applications in food processing, such as plasma, ozone and Pulsed Electric Field (PEF) treatments, are shown to improve food preservation and reduce spoilage. Key challenges—such as data quality, model scalability, and prediction accuracy—are discussed, particularly in the context of data-poor environments, limiting broader model applicability. The paper concludes by outlining future directions, emphasizing context-specific AI implementations, the need for public–private collaboration, and policy interventions to enhance scalability and adoption in food security contexts.

99 GENERAL AND MISCELLANEOUS↗

Data for Rewiring Yeast Metabolism for Producing 2,3-Butanediol and Two Downstream Applications: Techno-Economic Analysis and Life Cycle Assessment of Methyl Ethyl Ketone (MEK) and Agricultural Biostimulant Production

Rising concerns for sustainability and global climate change have driven the development of sustainable production pathways for biofuels and chemicals from lignocellulosic biomass via integrated biological and chemical processes. We constructed an engineered Saccharomyces cerevisiae capable of producing 2,3-butanediol (2,3-BDO) from glucose without accumulating ethanol and glycerol, which hinder downstream processing of 2,3-BDO, through extensive metabolic reprogramming. Specifically, we introduced heterologous 2,3-BDO biosynthetic enzymes and deleted the major isozymes of ethanol and glycerol biosynthetic enzymes. In addition, we introduced an NAD+ regenerating Pyruvate-Malate (PM) cycle and enhanced the NAD+ regenerating capability of the PM cycle to resolve the redox imbalance from the deletion of ethanol and glycerol production pathways. The resulting engineered yeast produced 109.9 g/L of 2,3-BDO with a productivity of 1.0 g/L/h and a yield of 0.36 g/g glucose in a fed-batch fermentation. We also conducted techno-economic analysis (TEA) and life cycle assessment (LCA) of the production of methyl ethyl ketone (MEK) through catalytic dehydration of 2,3-BDO. A TEA based on the experimental results indicated that the minimum product selling price (MPSP) was estimated to be $1.90/kg. Regarding cradle-to-grave LCA, 100-year global warming potential (GWP100) and fossil energy consumption (FEC) were found to be 0.37 kg CO2 eq/kg and 3.1 MJ/kg, respectively. These results demonstrated the feasibility of cost-competitive and sustainable bio-based MEK production via yeast fermentation. In addition, we explored the possibility of using the fermentation broth containing 2,3-BDO as a biostimulant inducing drought tolerance in plants. As a result, the yeast 2,3-BDO fermentation broth can induce drought tolerance in Arabidopsis thaliana without a complicated purification process.

Economics↗

Agricultural crop production by county - mature-market medium scenario

This dataset contains data on agricultural crop production by county from 2022 to 2041. The agricultural crop in this dataset includes barley, biomass sorghum, corn, cotton, energy cane, eucalyptus, grain sorghum, hay, miscanthus, oats, pine, poplar, rice, soybean, switchgrass, wheat, and willow. The dataset was obtained from the database of the BT23 (Davis et al., 2024) for the mature-market medium scenario with biomass market prices from $30 to $130 per dry ton.

agricultural crop↗

Agricultural residue production by county - mature-market medium scenario

This dataset contains data on agricultural residue production by county from 2022 to 2041. The agricultural residue includes barley straw, corn stover, oats straw, sorghum stubble, and wheat straw. The dataset was obtained from the database of the BT23 (Davis et al., 2024) for the mature-market medium scenario with biomass market prices from $50 to $130 per dry ton. For access to this dataset, please use the contact form and indicate the dataset by name.

agricultural residues↗

Integrated Urban Services: Program Impact and Business Plan Summary

The Integrated Urban Services (IUS) program, launched in 2021 and funded by the U.S. State Department under the United States-Association of Southeast Asian Nations (US-ASEAN) Smart Cities Partnership, aimed to bolster resilience in ASEAN cities by addressing challenges across food, energy, and water systems. Led by the National Renewable Energy Lab (NREL) with support from Regenerative Impact Ventures, the program focused on demonstrating the socio-economic benefits of integrated urban planning, educating stakeholders on circular economy principles, providing technical assistance to two ASEAN cities, and attracting private sector involvement. The program facilitated peer learning events, engaging public and private sector participants and leveraging knowledge from a group of global experts to inform approaches and best practices. Technical assistance was provided to two pilot cities, Iskandar Malaysia and Cagayan de Oro, Philippines, resulting in the development of market-driven business plans for resilient, circular, and regenerative energy-water-food system projects. The Iskandar Malaysia pilot focused on development of a state-of-the-art AgriTech Innovation Hub and Modern Farming Complex to enhance agricultural productivity and produce enough renewable energy to power the facilities. The Cagayan de Oro project aimed to enhance urban agricultural productivity and waste management through development of an Urban Precision Agricultural Complex featuring aeroponics, hydroponics, aquaponics, agrivoltaics, and a Black Solider Fly Facility for converting municipal solid waste into commodities. The success of the IUS program sets a precedent for replicating integrated urban service models globally, offering valuable insights for cities aiming to enhance their resilience and sustainability.

ASEAN↗

Measuring impacts of California agri-environmental programs using field-scale satellite data

In the past decade, California has invested over $\$$200 million in direct grants to growers to support the adoption of agricultural practices that save water and/or improve soil health while also reducing greenhouse gas emissions. Ex-post evaluation of agri-environmental outcomes of these grant programs, however, is limited. We use satellite data to monitor changes in field-level consumptive water use and greenness (i.e. normalized difference vegetation index), a proxy for agricultural productivity, for the most frequently funded crop-types (almonds, grapes, and walnuts) in two California Department of Food and Agriculture programs. Nearly 600 fields receiving funding during the 2014–2022 period were analyzed using two causal inference methods. Fields that received grants to both upgrade irrigation systems and install irrigation water management sensors showed reduced consumptive water use and greenness by an average of 3.5% and 4.2%, respectively (significant at the 10% level). In contrast, we find that the adoption of only irrigation water management sensors, which are designed to inform irrigation scheduling and management, resulted in an average increase of 4.1% and 4.8% in consumptive water use and greenness respectively (significant at the 5% level). We find negligible effects for either consumptive water use or greenness when both pump efficiency upgrades and sensors were implemented. We further find that grants for compost addition and cover cropping led to small greenness increases of 1.7% and 2.8% respectively (significant at the 10% level) and had insignificant effects on consumptive water use. Our analysis of five agri-environmental program interventions reveals that several practice outcomes may be at odds with stated program goals of reducing water use while maintaining or improving agricultural productivity.

agriculture↗

Two-Way Option Contracts That Facilitate Adaptive Water Reallocation in the Western United States

Many water markets in the western United States (U.S.) have the ability to reallocate water temporarily during drought, often as short-term water rights leases from lower value irrigated activities to higher value urban uses. Regulatory approval of water transfers, however, typically takes time and involves high transaction costs that arise from technical and legal analyses, discouraging short-term leasing. This leads municipalities to protect against drought-related shortfalls by purchasing large volumes of infrequently used permanent water rights. High transaction costs also result in municipal water rights rarely being leased back to irrigators in wet or normal years, reducing agricultural productivity. This research explores the development of a multi-year two-way option (TWO) contract that facilitates leasing from agricultural-to-urban users during drought and leasing from urban-to agricultural users during wet periods. The modeling framework developed to assess performance of the TWO contracts includes consideration of the hydrologic, engineered, and institutional systems governing the South Platte River Basin in Colorado where there is growing competition for water between municipalities (e.g., the city of Boulder) and irrigators. The modeling framework is built around StateMod, a network-based water allocation model used by state regulators to evaluate water rights allocations and potential rights transfers. Results suggest that the TWO contracts could allow municipalities to maintain supply reliability with significantly reduced rights holdings at lower cost, while increasing agricultural productivity in wet and normal years. Additionally, the TWO contracts provide irrigators with additional revenues via net payments of option fees from municipalities.

54 ENVIRONMENTAL SCIENCES↗

A coupled hydrologic-agroeconomic modeling framework to evaluate adaptive irrigation strategies under groundwater withdrawal restrictions

Growing groundwater scarcity requires integrated tools to capture interactions among hydrology, agricultural production, markets, and land use. This study presents an iterative modeling framework that couples hydrologic, crop-yield, and economic models to capture two-way feedback among water availability, agricultural production, and market responses under groundwater constraints. The primary goal of this paper is to describe the methodological development of the coupled framework and demonstrate the significance of iterative model interaction. Applied to the western United States, we evaluated adaptive responses to restricting groundwater use beyond recharge levels, represented through changes in irrigation management and expansion or shrinkage of crop markets through land reallocation. Results demonstrate that the iterative coupling converges to stable equilibrium responses within 10 iterations. At equilibrium, deficit irrigation emerges as the dominant adaptation strategy in California, with irrigation levels stabilizing at approximately 70% of full irrigation demand, while Arizona and New Mexico experience stronger yield sensitivities. Early iterations produce commodity price increases of up to 10% for fruit and vegetable crops; however, these responses moderate as land allocation and production patterns adjust across regions. Deficit irrigation and spatial reallocation of irrigated land partially offset production losses, with variability observed across different states: California maintains yields primarily via deficit irrigation, whereas Arizona and New Mexico will rely mainly on reducing irrigated area to absorb the shock. By capturing feedback between biophysical and economic processes, this approach highlights how irrigation strategies and land-use decisions evolve under water stress and provides a transferable platform for evaluating water management policies.

54 ENVIRONMENTAL SCIENCES↗

Optimizing DOE Opportunities to Research Land–Atmosphere Interactions in the U.S. Southeast (Workshop Report)

The southeastern United States (Southeast), with its complex and varied environments, is an area of tremendous economic, ecological, and societal importance to the country. The region is characterized by heterogeneous landscapes (i.e., geology and soil type) and a long history of human land use coupled with a warm temperature regime and high precipitation. As a result, soil erosion and deposition are pronounced, vegetation recovery is rapid, and human modification is extensive across the region. To better understand land–atmosphere interactions in this important and complex region, research communities supported by the U.S. Department of Energy’s Biological and Environmental Research (BER) program identified the Southeast as a priority region of interest. In fall 2024, the third Atmospheric Radiation Measurement Mobile Facility (AMF3), one of three mobile monitoring facilities designed to collect atmospheric and climate data from undersampled regions around the world, will begin operations in northwestern Alabama’s Bankhead National Forest (BNF). The AMF3-BNF 5-year deployment, from 2024–2029, will monitor the effects of feedbacks among aerosols, clouds, and precipitation on plant physiology and canopy-scale fluxes. It will also focus on scale aggregation to resolve the role of local forcing on larger-scale processes. To enable broader AMF3 involvement by the science community, the BER Environmental System Science (ESS) program organized the Southeast Land– Atmosphere Research Opportunities (SELARO) workshop in August 2023. The purpose was to identify gaps in scientific understanding of terrestrial processes in the Southeast (defined as states bounded by the Gulf of Mexico to the south, the Atlantic Ocean to east, the Mississippi River to the west, and extending through Tennessee and North Carolina to the north) and explore opportunities to use the AMF3-BNF deployment to coordinate and leverage research efforts across the region. Many parts of the Southeast have experienced repeated anthropogenic forcings. Farming, hunting, burning, and settlement of the region by Indigenous Peoples first shaped the distribution of plant communities, which in turn influenced European colonization patterns. Timber harvesting was common during the expansion of European settlements, and production forestry continues today. Agricultural production was extensive and then waned through the 20th century, creating a period of afforestation following agricultural abandonment. Today, many formerly agricultural landscapes are undergoing rapid urbanization and suburbanization. Overlying these patterns of anthropogenic land use are frequent disturbances from hurricanes, tornadoes, wildfires, drought, flooding, ice storms, and the occasional blizzard. An additional characteristic of the Southeast is its overall landscape complexity. Unlike the western United States, where broad expanses may share similar characteristics, Southeast topography, drainage patterns, vegetation, and development patterns vary widely across relatively small spatial scales (<1 km). This is due to the region’s underlying geology and soil development, species biodiversity patterns, and land ownership and use coupled with strong forces of erosion, weathering, and rapid plant growth in the warm, wet climate.

54 ENVIRONMENTAL SCIENCES↗

Inputs to GCAM-USA: IM3 Phase 2 Experiments

Overview This dataset contains XML input files for the IM3 Phase 2 version of GCAM-USA. The files are organized into two categories: Scenario-specific inputs represent hydroclimate and socioeconomic effects on water availability, heating and cooling degree-hours, and agricultural productivity. They support eight IM3 canonical scenarios: rcp45cooler_ssp3 rcp45cooler_ssp5 rcp45hotter_ssp3 rcp45hotter_ssp5 rcp85cooler_ssp3 rcp85cooler_ssp5 rcp85hotter_ssp3 rcp85hotter_ssp5 Model-improvement inputs extend GCAM-USA v5.3 with updated representations of coal and nuclear power plant retirements, electricity trade among U.S. interconnections, offshore carbon storage costs, and groundwater depletion constraints. Data structure Scenario-specific inputs rcp45_runoff/ and rcp85_runoff/XML files describing water availability by HUC2 basin under the RCP 4.5 and RCP 8.5 scenarios. rcp45_hdcd/ and rcp85_hdcd/XML files containing monthly-day and monthly-night heating and cooling degree-hours at the U.S. state level for different RCP-SSP combinations. rcp45_agyields/ and rcp85_agyields/XML files describing changes in agricultural productivity at the intersection of GCAM regions and HUC2 water basins for different RCP-SSP combinations. rcp45_emissions_pathway/The emissions-constraint XML file used to represent the RCP 4.5 pathway. Model-improvement inputs core_retire/Updates coal-fired power plant retirement schedules based on New England ISO. GCAMUSA_IM3_elec_trade_interconnect.xmlRestricts electricity trade to occur within the ERCOT, WECC, and IE interconnections. nuclear_USA.xmlUpdates the retirement schedules of the Diablo Canyon and Palisades nuclear power plants. high_cost_offshore_carbon.xmlUpdates the assumed cost of offshore carbon storage. water_supply_constrained_gleeson_5pct.xmlReplaces WaterGAP historical groundwater-depletion estimates with data from the Gleeson dataset and limits groundwater extraction to 5% of the available groundwater in each Superwell grid cell. How to use the data This dataset is designed for use with the IM3 version of GCAM-USA. Download or clone GCAM-USA from the IM3 GCAM GitHub repository at https://github.com/IMMM-SFA/gcam-core and check out the gcam-usa-im3 branch. Place the downloaded folder im3scenarios in the gcam-core/input directory while preserving the provided folder structure.

Energy↗

Agrivoltaic Decision Tools for Perennial and Field Crop Farmers

This article describes a series of spreadsheet-based tools to help farmers estimate costs, revenues, and yields from agricultural production under different configurations of agrivoltaic installations for field and perennial crops. Crop-specific log books allow farmers to project changes in activity-level costs from the field due to agrivoltaic installations. The whole-farm tool helps farmers aggregate activity-level net returns up to the farm level to calculate projections of trade-offs between crop production with or without agrivoltaic installations. We present tools for lettuce and cranberries, but the tools are comprehensive and inclusive and so can be modified for other perennial and field crops.

14 SOLAR ENERGY↗

Potential long-term, global effects of enhancing the domestic terrestrial carbon sink in the United States through no-till and cover cropping

Abstract Background Achieving a net zero greenhouse gas United States (US) economy is likely to require both deep sectoral mitigation and additional carbon dioxide removals to offset hard-to-abate emissions. Enhancing the terrestrial carbon sink, through practices such as the adoption of no-till and cover cropping agricultural management, could provide a portion of these required offsets. Changing domestic agricultural practices to optimize carbon content, however, might reduce or shift US agricultural commodity outputs and exports, with potential implications on respective global markets and land use patterns. Here, we use an integrated energy-economy-land-climate model to comprehensively assess the global land, trade, and emissions impacts of an adoption of domestic no-till farming and cover cropping practices based on carbon pricing. Results We find that the adoption of these practices varies depending on which aspects of terrestrial carbon are valued. Valuation of all terrestrial carbon resulted in afforestation at the expense of domestic agricultural production. In contrast, a policy valuing soil carbon in agricultural systems specifically indicates strong adoption of no-till and cover cropping for key crops. Conclusions We conclude that under targeted terrestrial carbon incentives, adoption of no-till and cover cropping practices in the US could increase the terrestrial carbon sink with limited effects on crop availability for food and fodder markets. Future work should consider integrated assessment modeling of non-CO 2 greenhouse gas impacts, above ground carbon storage changes, and capital and operating cost considerations.

54 ENVIRONMENTAL SCIENCES↗

The Interactions Between Shading and Organic Fertilizer Application on Dry-farmed Tomato Grown Between Photovoltaic Panels

Agrivoltaic systems are mixed systems of solar photovoltaic (PV) panels and agricultural production, where shade from the panels can result in lower evapotranspiration for crops, which is of particular interest for dryland agriculture. Dry-farmed tomato (Solanum lycopersicum) production in the Willamette Valley of Oregon has lower total yields and higher rates of blossom-end rot (BER) than irrigated tomato production, resulting in reduced marketable yields. To determine how dry-farmed ‘Early Girl’ tomato performed in an agrivoltaics system, a trial was conducted at the Valley Creek Solar Project (Salem, OR, USA) in 2020, using three different amendment treatments and three levels of shading from the panels. Amendment treatments were 0N (receiving no fertilizer), 84N (receiving 84 kg·ha −1 N), and 168N (receiving 168 kg·ha −1 N), applied as processed chicken manure. Plants were estimated to receive an irradiance factor of 30%, 76%, and 89% for full-shade, partial-shade, and full-sun treatments respectively. There was an interaction between amendment treatments and shading treatments in their effects on unblemished yield (yield of fruit without BER or sunscald). The optimum fertilizer application for full-shade and partial-shade rows was 84N, the optimum for full-sun rows was 0N. Fertilizing these rows at these rates resulted in an unblemished yield for the aisle of 11.1 t·ha −1 , which was lower than unblemished yields reported in previous experiments and trials in open fields. However, these results are from a single location and a single year, and other solar sites may behave more similar to open-field conditions. Shading from the panels increased average fruit weight and decreased incidence of BER and sunscald, suggesting that crops were less drought stressed. This resulted in similar unblemished yields for the full-shade and full-sun plots at 84N and 168N. Applying fertilizer resulted in higher total yields, smaller average fruit weight, increased BER incidence, and decreased sunscald incidence. The results suggest a possible synergy between dry-farmed tomato production and agrivoltaics, although several concerns remain, including difficulties managing the vegetation under panels, rules restricting PVs on high-value agricultural soils, and the possibility of soil compaction during PV installation.

14 SOLAR ENERGY↗

EvoNet: A phylogenomic and systems biology approach to identify genes underlying plant survival in marginal, low‐N soils

The DOE‐BER “EvoNet” project investigates the genetic and molecular basis of plant resilience in extreme environments. We do this by identifying key genes that enable “extreme survivor” species to thrive in the nitrogen-poor soils of Chile’s hyper-arid Atacama Desert. Our collections focus on 32 Atacama extremophile species, including seven grass species with potential biofuel applications. To identify genes-of-importance to survival we compared genomic and transcriptomic profiles of extremophile species that thrive in the Atacama to those of closely related “sister” species from nitrogen-rich arid and mesic regions of California. Deep RNA sequencing and de novo transcriptome assembly across these triplet species sets supported a phylogenomic framework for identifying positively selected genes associated with adaptive divergence. Our integrative analysis combined ecological and environmental data, metagenomics, evolutionary and systems biology, and metabolomics. This enabled us to create an unprecedented framework for systematically understanding how non-model plants have adapted to survive in extreme conditions. Our resulting database of positively selected ortholog groups in the extremophile plants offers promising targets for engineering crop and biofuel species with enhanced resilience to drought and extreme weather. Additionally, our newest dataset explores and exploits a complementary metabolomic approach. This new aspect provides innovative strategies to manipulate plant cell metabolism, further supporting efforts to improve agricultural productivity in the face of extreme climates. Importantly, our combined evolutionary- and metabolomic-based strategies focused on convergent patterns of adaptation, providing a genetic and metabolomic toolkit for improving crop and biofuel resilience across diverse plant species. Finally, our novel exploration of ecological and evolutionary dynamics delivered to the community a phylogenomic computational pipeline called “PhyloGeneious.” Our continued adaptations of this pipeline are publicly available to expedite evolutionary genomic research for future scientific discoveries. In total, our DOE-BER has provided genomic, metabolomic, and computational strategies to understand how extremophile plants provide evolutionary and physiological targets for improving agricultural and biofuel production.

59 BASIC BIOLOGICAL SCIENCES↗

Membrane Contactors for Ammonia Recovery from Anaerobic Digester Centrate: Pretreatment and Process Optimization

Haber-Bosch process allows for the production of modern fertilizers and is crucial for meeting increasing demands for agricultural production. The process requires large amounts of natural gas and contributes to global warming. An alternative to the Haber-Bosch process utilizes membrane contactors to recover nitrogen from the anaerobic digester centrate. In previous studies, high recoveries have been achieved, but membrane fouling decreased the performance and required maintenance to clean the membranes. Furthermore, this study investigated the effect of a settling and ultrafiltration system to pretreat centrate from an anaerobic digester to prevent fouling of the membrane contactor system. The system achieved high recoveries of over 90% for 10 cycles without any performance decline. Tests with increasing distillate concentrations of ammonium sulfate up to 165,000 mg/L-N could not identify a significant decline in membrane performance either. This allows for concentration up to crystallization in a single stage.

09 BIOMASS FUELS↗