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ZERNIPAX: A fast and accurate Zernike polynomial calculator in Python

Zernike polynomials serve as an orthogonal basis on the unit disc, and have proven to be effective in optics simulations, astrophysics, and more recently in plasma simulations. Unlike Bessel functions, Zernike polynomials are inherently finite and smooth at the disc center (r=0), ensuring continuous differentiability along the axis. This property makes them particularly suitable for simulations, requiring no additional handling at the origin. We developed ZERNIPAX, an open-source Python package capable of utilizing CPU/GPUs, leveraging Google's JAX package and available on GitHub as well as the Python software repository PyPI. Furthermore, our implementation of the recursion relation between Jacobi polynomials significantly improves computation time compared to alternative methods by use of parallel computing while still performing more accurately for high-mode numbers.

Astrophysics↗

3D spherical functional expansion tallies in Serpent 2 Monte Carlo code

This work extends the application of functional expansion tallies to 3D spherical geometries. The 3D Zernike polynomials are set as an orthonormal polynomials basis for the functional reconstruction. The study describes the construction of the complete set of polynomials, a natural expansion of the spherical harmonics polynomials where 3D Zernike moments can be evaluated as a linear combination of the geometrical moments. The 3D Zernike polynomials formulation and the computational approach implemented in Serpent 2 are presented and tested through the Godiva model from the ICSBEP criticality benchmark test cases. The implementation results are in agreement with a reference solution described in a fine-resolution mesh, enhancing also the performance and memory demand. (authors)

22 GENERAL STUDIES OF NUCLEAR REACTORS↗

Active Optical Control with Machine Learning: A Proof of Concept for the Vera C. Rubin Observatory

Abstract The Active Optics System of the Vera C. Rubin Observatory (Rubin) uses information provided by four wave front sensors to determine deviations between the reconstructed wave front and the ideal wave front. The observed deviations are used to adjust the control parameters of the optical system to maintain image quality across the 3.°5 field of view. The baseline approach from the project is to obtain amplitudes of the Zernike polynomials describing the distorted wave front from out-of-focus images collected by the wave front sensors. These Zernike amplitudes are related via an “influence matrix” to the control parameters necessary to correct the wave front. In this paper, we use deep-learning methods to extract the control parameters directly from the images captured by the wave front sensors. Our neural net model uses anti-aliasing pooling to boost performance, and a domain-specific loss function to aid learning and generalization. The accuracy of the control parameters derived from our model exceeds Rubin requirements even in the presence of full-moon background levels and mis-centering of reference stars. Although the training process is time consuming, model evaluation requires only a few milliseconds. This low latency should allow for the correction of the optical configuration during the readout and slew interval between successive exposures.

Astronomy & Astrophysics↗

Modal focal adaptive optics for Bessel-focus two-photon fluorescence microscopy

Adaptive optics (AO) improves the spatial resolution of microscopy by correcting optical aberrations. While its application has been well established in microscopy modalities utilizing a circular pupil, its adaptation to systems with non-circular pupils, such as Bessel-focus two-photon fluorescence microscopy (2PFM) with an annular pupil, remains relatively uncharted. Herein, we present a modal focal AO (MFAO) method for Bessel-focus 2PFM. Measuring and correcting aberration using a spatial light modulator placed in conjugation with the focal plane of the microscope objective, MFAO employs Zernike annular polynomials — a first in AO implementation — to achieve performance on par with a previous zonal AO method, but with a notably simplified optical configuration. We validated the performance of MFAO in correcting artificial and sample-induced aberrations, as well as in in vivo imaging of zebrafish larvae and mouse brains. By expanding the application of modal AO to annular pupils as well as aberration measurement and correction to a wavefront modulator at the objective focal plane, MFAO represents a notable advancement in the implementation of AO in microscopy.

47 OTHER INSTRUMENTATION↗