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At least 19 records

Exponential time differencing for the tracer equations appearing in primitive equation ocean models

The tracer equations are part of the primitive equations used in ocean modeling and describe the transport of tracers, such as temperature, salinity or chemicals, in the ocean. Depending on the number of tracers considered, several equations may be added to and coupled to the dynamics system. In many relevant situations, the time-step requirements of explicit methods imposed by the transport and mixing in the vertical direction are more restrictive than those for the horizontal, and this may cause the need to use very small time steps if a fully explicit method is employed. To overcome this issue, we propose an exponential time differencing (ETD) solver where the vertical terms (transport and diffusion) are treated with a matrix exponential, whereas the horizontal terms are dealt with in an explicit way. In this work, we investigate numerically the computational speed-ups that can be obtained over other semi-implicit methods, and we analyze the advantages of the method in the case of multiple tracers.

42 ENGINEERING↗

Milky Way mass with K giants and BHB stars using LAMOST, SDSS/SEGUE, and Gaia : 3D spherical Jeans equation and tracer mass estimator

ABSTRACT We measure the enclosed Milky Way mass profile to Galactocentric distances of ∼70 and ∼50 kpc using the smooth, diffuse stellar halo samples of Bird et al. The samples are Large Sky Area Multi-Object Fiber Spectroscopic Telescope (LAMOST) and Sloan Digital Sky Survey/Sloan Extension for Galactic Understanding and Exploration (SDSS/SEGUE) K giants (KG) and SDSS/SEGUE blue horizontal branch (BHB) stars with accurate metallicities. The 3D kinematics are available through LAMOST and SDSS/SEGUE distances and radial velocities and Gaia DR2 proper motions. Two methods are used to estimate the enclosed mass: 3D spherical Jeans equation and Evans et al. tracer mass estimator (TME). We remove substructure via the Xue et al. method based on integrals of motion. We evaluate the uncertainties on our estimates due to random sampling noise, systematic distance errors, the adopted density profile, and non-virialization and non-spherical effects of the halo. The tracer density profile remains a limiting systematic in our mass estimates, although within these limits we find reasonable agreement across the different samples and the methods applied. Out to ∼70 and ∼50 kpc, the Jeans method yields total enclosed masses of 4.3 ± 0.95 (random) ±0.6 (systematic) × 1011 M⊙ and 4.1 ± 1.2 (random) ±0.6 (systematic) × 1011 M⊙ for the KG and BHB stars, respectively. For the KG and BHB samples, we find a dark matter virial mass of $M_{200}=0.55^{+0.15}_{-0.11}$ (random) ±0.083 (systematic) × 1012 M⊙ and $M_{200}=1.00^{+0.67}_{-0.33}$ (random) ±0.15 (systematic) × 1012 M⊙, respectively.

79 ASTRONOMY AND ASTROPHYSICS↗

The ocean model for E3SM global applications: Omega version 0.1.0 – a new high-performance computing code for exascale architectures

This paper introduces Omega, the Ocean Model for E3SM Global Applications. Omega is a new ocean model designed to run efficiently on high performance computing (HPC) platforms, including exascale heterogeneous architectures with accelerators, such as Graphics Processing Units (GPUs). Omega is written in C and uses the Kokkos performance portability library. These were chosen because they are well-supported and will help future-proof Omega for upcoming HPC architectures. Omega will eventually replace the Model for Prediction Across Scales-Ocean (MPAS-Ocean) in the US Department of Energy's (DOE's) Energy Exascale Earth System Model (E3SM). Omega runs on unstructured horizontal meshes with variable-resolution capability and implements the same horizontal discretization as MPAS-Ocean. This work documents the design and performance of Omega Version 0.1.0 (Omega-V0), which solves the shallow water equations with passive tracers and is the first step towards the full primitive equation ocean model. On Central Processing Units (CPUs), Omega-V0 is 1.4 times faster than MPAS-Ocean with the same configuration. Omega-V0 is more efficient on GPUs than CPUs on a per-watt basis – by a factor of 5.3 on Frontier and 3.6 on Aurora, two of the world's fastest exascale computers.

54 ENVIRONMENTAL SCIENCES↗

Single–Well Injection–Drift Test to Estimate Groundwater Velocity

A simple algebraic equation is presented here to estimate the magnitude of groundwater velocity based on data from a single-well injection-drift test thereby eliminating the time-consuming and costly extraction phase. A volume of tracer-amended water was injected by forced-gradient into a single well followed by monitoring of the conservative solute tracers under natural-gradient conditions as their upgradient portions drifted back through the well. The breakthrough curve data from the single well during the drift phase was analyzed to determine the mean travel times of the tracers. The estimated mean upgradient travel distance back through the single well and the mean travel times of the tracers were used in a simple algebraic equation to estimate groundwater velocity. The groundwater velocity based on the single-well injection-drift test was estimated to be approximately 0.64 ft per day. Two transects of observation wells were used to monitor the natural-gradient tracer transport downgradient of the injection well. The one-dimensional, or dual-well, transport of the tracer from the injection well to the nearest downgradient observation well indicated that the groundwater velocity was 0.55 ft per day. The two-dimensional, or multi-well, transport of the center of mass of the tracers indicated that the groundwater velocity was 0.60 ft per day; the dual- and multi-well results were in excellent agreement with those from the single-well and validated the simple algebraic equation. In conclusion, the new single-well method presented here is relatively simple, rapid, and does not require an extraction phase.

54 ENVIRONMENTAL SCIENCES↗

D 3 -creatine dilution for skeletal muscle mass measurement: historical development and current status

The French chemist Michel Eugène Chevreul discovered creatine in meat two centuries ago. Extensive biochemical and physiological studies of this organic molecule followed with confirmation that creatine is found within the cytoplasm and mitochondria of human skeletal muscles. Two groups of investigators exploited these relationships five decades ago by first estimating the creatine pool size in vivo with 14 C and 15 N labelled isotopes. Skeletal muscle mass (kg) was then calculated by dividing the creatine pool size (g) by muscle creatine concentration (g/kg) measured on a single muscle biopsy or estimated from the literature. This approach for quantifying skeletal muscle mass is generating renewed interest with the recent introduction of a practical stable isotope (creatine-(methyl-d 3 )) dilution method for estimating the creatine pool size across the full human lifespan. The need for a muscle biopsy has been eliminated by assuming a constant value for whole-body skeletal muscle creatine concentration of 4.3 g/kg wet weight. The current single compartment model of estimating creatine pool size and skeletal muscle mass rests on four main assumptions: tracer absorption is complete; tracer is all retained; tracer is distributed solely in skeletal muscle; and skeletal muscle creatine concentration is known and constant. Three of these assumptions are false to varying degrees. Not all tracer is retained with urinary isotope losses ranging from 0% to 9%; an empirical equation requiring further validation is used to correct for spillage. Not all tracer is distributed in skeletal muscle with non-muscle creatine sources ranging from 2% to 10% with a definitive value lacking. Lastly, skeletal muscle creatine concentration is not constant and varies between muscles (e.g. 3.89–4.62 g/kg), with diets (e.g. vegetarian and omnivore), across age groups (e.g. middle-age, ~4.5 g/kg; old-age, 4.0 g/kg), activity levels (e.g. athletes, ~5 g/kg) and in disease states (e.g. muscular dystrophies, <3 g/kg). Some of the variability in skeletal muscle creatine concentrations can be attributed to heterogeneity in the proportions of wet skeletal muscle as myofibres, connective tissues, and fat. These observations raise serious concerns regarding the accuracy of the deuterated-creatine dilution method for estimating total body skeletal muscle mass as now defined by cadaver analyses of whole wet tissues and in vivo approaches such as magnetic resonance imaging. A new framework is needed in thinking about how this potentially valuable method for measuring the creatine pool size in vivo can be used in the future to study skeletal muscle biology in health and disease.

body composition↗

Limits on clustering and smooth quintessence from the EFTofLSS

We apply the Effective Field Theory of Large-Scale Structure (EFTofLSS) to analyze cosmological models with clustering quintessence, which allows us to consistently describe the parameter region in which the quintessence equation of state w < -1. First, we extend the description of biased tracers in redshift space to the presence of clustering quintessence, and compute the one-loop power spectrum. We solve the EFTofLSS equations using the exact time dependence, which is relevant to obtain unbiased constraints. Then, fitting the full shape of BOSS pre-reconstructed power spectrum measurements, the BOSS post-reconstruction BAO measurements, BAO measurements from 6DF/MGS and eBOSS, the Supernovae from Pantheon, and a prior from BBN, we bound the clustering quintessence equation of state parameter w = -1.011 -0.048 +0.053 at 68% C.L. Further combining with Planck, we obtain w = -1.028 -0.030 +0.037 at 68% C.L. We also obtain constraints on smooth quintessence, in the physical regime w ≥ -1: combining all datasets, we get -1 ≤ w < -0.979 at 68% C.L. These results strongly support a cosmological constant.

79 ASTRONOMY AND ASTROPHYSICS↗

Hydrologic Connectivity and Patch‐To‐Hillslope Scale Relations in Dryland Ecosystems

Abstract In drylands, runoff during storms redistributes water and nutrients from bare soil areas to vegetated patches, subsidizing vegetation with additional resources. The extent of this redistribution depends on the interplay between surface roughness and permeability; greater permeability in vegetated patches promotes run‐on to vegetation, but greater surface roughness diverts runoff, producing tortuous flow paths that bypass vegetation. Here, this interplay is examined in virtual experiments using the 2D Saint Venant Equations to measure runoff connectivity. Flowpaths are delineated using tracers advected by the flow. Distances between tracer sources and sinks along flowpaths measure hydrologic connectivity at two lengthscales: connectivity to the hillslope outlet and within‐slope source‐sink connectivity. Differences between these connectivity lengthscales indicate how flow may “by‐pass” vegetated patches within hillslopes. At the hillslope scale, a derived power‐law relation between the runoff coefficient and outlet connectivity describes hillslope water losses, providing a foundation for identifying landscapes likely to shed water.

54 ENVIRONMENTAL SCIENCES↗

Islet: interpolation semi-Lagrangian element-based transport

Abstract. Advection of trace species, or tracers, also called tracer transport, in models of the atmosphere and other physical domains is an important and potentially computationally expensive part of a model's dynamical core. Semi-Lagrangian (SL) advection methods are efficient because they permit a time step much larger than the advective stability limit for explicit Eulerian methods without requiring the solution of a globally coupled system of equations as implicit Eulerian methods do. Thus, to reduce the computational expense of tracer transport, dynamical cores often use SL methods to advect tracers. The class of interpolation semi-Lagrangian (ISL) methods contains potentially extremely efficient SL methods. We describe a finite-element ISL transport method that we call the interpolation semi-Lagrangian element-based transport (Islet) method, such as for use with atmosphere models discretized using the spectral element method. The Islet method uses three grids that share an element grid: a dynamics grid supporting, for example, the Gauss–Legendre–Lobatto basis of degree three; a physics parameterizations grid with a configurable number of finite-volume subcells per element; and a tracer grid supporting use of Islet bases with particular basis again configurable. This method provides extremely accurate tracer transport and excellent diagnostic values in a number of verification problems.

58 GEOSCIENCES↗

Cosmological constraints from the DESI DR1 joint power spectrum and bispectrum analysis

We derive cosmological parameter constraints from the Dark Energy Spectroscopic Instrument (DESI) Data Release 1 (DR1) galaxy clustering data, based on a joint full-shape analysis of the power spectrum multipoles and the bispectrum monopole using the ShapeFit framework. This is the follow-up of our previous work, in which we obtained for the first time constraints on the ShapeFit parameters using the bispectrum of DESI DR1. Here we present the first ShapeFit cosmological inference results using the bispectrum of DESI DR1. We recover values for the matter density parameter and Hubble constant of respectively $Ω_m=0.310\pm0.012$ and $H_0=[68.92\pm0.97]\,\mathrm{km\, s^{-1} Mpc^{-1}}$, consistent with previous results from the full DESI DR1 dataset that did not use the bispectrum signal. The inclusion of the bispectrum significantly tightens the constraints on the amplitude of fluctuations, reducing the error-bars in $\ln(A_s\times10^{10})$ by approximately 20%, compared to using the power spectrum alone. We also explore extended cosmological models by performing fits for the evolving dark energy equation of state $w_0w_a$, and the sum of neutrino masses $\sum m_ν$. In these cases, we obtain constraints slightly larger than the ones from previous works from the DESI collaboration, due to not combining the full-shape results with other probes in all tracers. We find no strong evidence of deviations from standard $Λ$CDM, with the dark energy equation-of-state remaining within 2$σ$ from a cosmological constant $Λ$, and the neutrino mass being consistent with the normal hierarchy, $\sum m_ν<0.1\,[eV]$ at 95% confidence limit. These constraints are broadly consistent with other DESI DR1 analyses, thus validating the robustness of the ShapeFit compression approach and the inclusion of the bispectrum for cosmological inference.

Novell-Masot, S. [ICC, Barcelona U.; Geneva U., De↗

Cosmological constraints from the DESI DR1 joint power spectrum and bispectrum analysis

We derive cosmological parameter constraints from the Dark Energy Spectroscopic Instrument (DESI) Data Release 1 (DR1) galaxy clustering data, based on a joint full-shape analysis of the power spectrum multipoles and the bispectrum monopole using the ShapeFit framework. This is the follow-up of our previous work, in which we obtained for the first time constraints on the ShapeFit parameters using the bispectrum of DESI DR1. Here we present the first ShapeFit cosmological inference results using the bispectrum of DESI DR1. We recover values for the matter density parameter and Hubble constant of respectively $Ω_m=0.310\pm0.012$ and $H_0=[68.92\pm0.97]\,\mathrm{km\, s^{-1} Mpc^{-1}}$, consistent with previous results from the full DESI DR1 dataset that did not use the bispectrum signal. The inclusion of the bispectrum significantly tightens the constraints on the amplitude of fluctuations, reducing the error-bars in $\ln(A_s\times10^{10})$ by approximately 20%, compared to using the power spectrum alone. We also explore extended cosmological models by performing fits for the evolving dark energy equation of state $w_0w_a$, and the sum of neutrino masses $\sum m_ν$. In these cases, we obtain constraints slightly larger than the ones from previous works from the DESI collaboration, due to not combining the full-shape results with other probes in all tracers. We find no strong evidence of deviations from standard $Λ$CDM, with the dark energy equation-of-state remaining within 2$σ$ from a cosmological constant $Λ$, and the neutrino mass being consistent with the normal hierarchy, $\sum m_ν<0.1\,[eV]$ at 95% confidence limit. These constraints are broadly consistent with other DESI DR1 analyses, thus validating the robustness of the ShapeFit compression approach and the inclusion of the bispectrum for cosmological inference.

Novell-Masot, S. [ICC, Barcelona U.; Geneva U., De↗

EMPDF : inferring the Milky Way mass with data-driven distribution function in phase space

We introduce the emPDF (empirical distribution function), a novel dynamical modelling method that infers the gravitational potential from kinematic tracers with optimal statistical efficiency under the minimal assumption of steady state. emPDF determines the best-fitting potential by maximizing the similarity between instantaneous kinematics and the time-averaged phase-space distribution function (DF), which is empirically constructed from observation upon the theoretical foundation of oPDF (Han et al. 2016). This approach eliminates the need for presumed functional forms of DFs or orbit libraries required by conventional DF- or orbit-based methods. emPDF stands out for its flexibility, efficiency, and capability in handling observational effects, making it preferable to the popular Jeans equation or other minimal assumption methods, especially for the Milky Way (MW) outer halo where tracers often have limited sample size and poor data quality. We apply emPDF to infer the MW mass profile using Gaia DR3 data of satellite galaxies and globular clusters, obtaining enclosed masses of M (,r) = 26±8, 46±8, 90±13⁠, and 149±40 x 10 10 M ⊙ at r = 30, 50, 100⁠, and 200 kpc, respectively. These are consistent with the updated constraints from simulation-informed DF fitting (Li et al. 2020). While the simulation-informed DF offers superior precision owing to the additional information extracted from simulations, emPDF is independent of such supplementary knowledge and applicable to general tracer populations. emPDF is currently implemented for tracers with complete 6D kinematics within spherical potentials, but it can potentially be extended to address more general problems.

Astrophysics of Galaxies (astro-ph.GA)↗

Inverse aqueous transport modeling for emergency response

ALGE is a three-dimensional, finite-difference aqueous transport model that simulates pollutant fate and transport in lakes, rivers, bays, and estuaries by solving the prognostic equations of mass, momentum, and energy. Its current modeling capabilities include transport of dissolved tracer for a series of predefined basins across the continental United States. Recently, an inverse method (also known as backtracking) has been added to ALGE to provide a possible source of a pollutant should one be detected by a sensor in a body of water and a source is not known. This inverse method is a three step process that uses an algorithm to inverse the flow. We demonstrate the new model’s capabilities through simulating the 2021 Piney Point spill in Tampa Bay, Florida (USA). This involves moving tracer backwards from its detection points, encompassing a potential source area, and applying Bayes’ Theorem and $\frac{𝜒}{𝑄}$ to reduce the area within which the true source could be located.

hydrological modeling↗

Constraints on the Cosmic Expansion Rate at Redshift 2.3 from the Lyman- α Forest

We determine the product of the expansion rate and angular-diameter distance at redshift z =2.3 from the anisotropy of Lyman-α (Ly⁢α) forest correlations measured by the Sloan Digital Sky Survey (SDSS). Our result is the most precise from large-scale structure at z > 1. Using the flat Λ cold dark matter model we determine the matter density to be Ω m = 0.3⁢6$^{+0.03}_{–0.04}$ from Ly⁢α alone. This is a factor of 2 tighter than baryon acoustic oscillation results from the same data due to our use of a wide range of scales (25 < r < 180 ℎ –1 Mpc). Using a nucleosynthesis prior, we measure the Hubble constant to be H o = 63.2 ± 2.5 km/s/Mpc. In combination with other SDSS tracers, we find H o = 67.2 ± 0.9 km/s/Mpc and measure the dark energy equation-of-state parameter to be w = –0.90 ± 0.12. Our Letter opens a new avenue for constraining cosmology at high redshift.

59 BASIC BIOLOGICAL SCIENCES↗

Revisiting adiabatic fraction estimations in cumulus clouds: high-resolution simulations with a passive tracer

The process of mixing in warm convective clouds and its effects on microphysics are crucial for an accurate description of cloud fields, weather, and climate. Still, they remain open questions in the field of cloud physics. Adiabatic regions in the cloud could be considered non-mixed areas and therefore serve as an important reference to mixing. For this reason, the adiabatic fraction (AF) is an important parameter that estimates the mixing level in the cloud in a simple way. Here, we test different methods of AF calculations using high-resolution (10 m) simulations of isolated warm cumulus clouds. The calculated AFs are compared with a normalized concentration of a passive tracer, which is a measure of dilution by mixing. This comparison enables the examination of how well the AF parameter can determine mixing effects and the estimation of the accuracy of different approaches used to calculate it. Comparison of three different methods to derive AF, with the passive tracer, shows that one method is much more robust than the others. Moreover, this method's equation structure also allows for the isolation of different assumptions that are often practiced when calculating AF such as vertical profiles, cloud-base height, and the linearity of AF with height. The use of a detailed spectral bin microphysics scheme allows an accurate description of the supersaturation field and demonstrates that the accuracy of the saturation adjustment assumption depends on aerosol concentration, leading to an underestimation of AF in pristine environments.

54 ENVIRONMENTAL SCIENCES↗

Isotope effects on the high pressure viscosity of liquid water measured by differential dynamic microscopy

In this paper, differential dynamic microscopy is performed in diamond anvil cells to measure the viscosity of water along the 24 °C isotherm to high-pressure by determination of the tracer diffusion coefficient of monodisperse silica spheres of known diameter and application of the Stokes-Einstein-Sutherland equation. This technique allows liquid samples to be compressed to greater pressure prior to freezing than with other viscometry methods. The highest-pressure measurement was made at 1.67 GPa, considerably deeper into the supercompressed regime than previously reported. The effect of isotopic composition is investigated with samples of normal water, heavy water, and partially deuterated water. When data below 0.25 GPa are excluded a free volume model fits the observed viscosities well yielding a theoretical glass transition density close to that observed in very-high-density amorphous ice. The improved fit above 0.25 GPa coincides with the loss of other anomalous behaviors in liquid water caused by hydrogen bonding and represents a transition to properties closer to those of a simple liquid.

74 ATOMIC AND MOLECULAR PHYSICS↗

Modeling Dust Production, Growth, and Destruction in Reionization-era Galaxies with the CROC Simulations: Methods and Parameter Exploration

We introduce a model for the explicit evolution of interstellar dust in a cosmological galaxy formation simulation. We post-process a simulation from the Cosmic Reionization on Computers project, integrating an ordinary differential equation for the evolution of the dust-to-gas ratio along pathlines in the simulation sampled with a tracer particle technique. This model incorporates the effects of dust grain production in asymptotic giant branch star winds and supernovae, grain growth due to the accretion of heavy elements from the gas phase of the interstellar medium, and grain destruction due to thermal sputtering in the high-temperature gas of supernova remnants due to thermal sputtering. A main conclusion of our analysis is the importance of a carefully chosen dust destruction model, for which different reasonable parameterizations can predict very different values at the ∼100 pc resolution of the interstellar medium (ISM) in our simulations. We run this dust model on the single most massive galaxy in a 10 h$^{−1}$ comoving megaparsec box, which attains a stellar mass of ∼2 × 10$^{9}$ M $_{⊙}$ by z = 5. We find that the model is capable of reproducing dust masses and dust-sensitive observable quantities broadly consistent with existing data from high-redshift galaxies. The total dust mass in the simulated galaxy is somewhat sensitive to parameter choices for the dust model, especially the timescale for grain growth due to accretion in the ISM. Consequently, observable quantity observations that can constrain galaxy dust masses at these epochs are potentially useful for placing constraints on dust physics.

79 ASTRONOMY AND ASTROPHYSICS↗

r -process nucleosynthesis and kilonovae from hypermassive neutron star post-merger remnants

ABSTRACT We investigate r-process nucleosynthesis and kilonova emission resulting from binary neutron star (BNS) mergers based on a three-dimensional (3D) general-relativistic magnetohydrodynamic (GRMHD) simulation of a hypermassive neutron star (HMNS) remnant. The simulation includes a microphysical finite-temperature equation of state (EOS) and neutrino emission and absorption effects via a leakage scheme. We track the thermodynamic properties of the ejecta using Lagrangian tracer particles and determine its composition using the nuclear reaction network SkyNet. We investigate the impact of neutrinos on the nucleosynthetic yields by varying the neutrino luminosities during post-processing. The ejecta show a broad distribution with respect to their electron fraction Ye, peaking between ∼0.25–0.4 depending on the neutrino luminosity employed. We find that the resulting r-process abundance patterns differ from solar, with no significant production of material beyond the second r-process peak when using luminosities recorded by the tracer particles. We also map the HMNS outflows to the radiation hydrodynamics code SNEC and predict the evolution of the bolometric luminosity as well as broadband light curves of the kilonova. The bolometric light curve peaks on the timescale of a day and the brightest emission is seen in the infrared bands. This is the first direct calculation of the r-process yields and kilonova signal expected from HMNS winds based on 3D GRMHD simulations. For longer-lived remnants, these winds may be the dominant ejecta component producing the kilonova emission.

79 ASTRONOMY AND ASTROPHYSICS↗

AthenaK: A Performance-portable Version of the Athena++ Adaptive Mesh Refinement Framework

We describe AthenaK: a new implementation of the Athena++ block-based adaptive mesh refinement framework using the Kokkos programming model. Finite volume methods for Newtonian, special relativistic, and general relativistic (GR) hydrodynamics and magnetohydrodynamics (MHD), and GR-radiation hydrodynamics and MHD, as well as a module for evolving Lagrangian tracer or charged test particles (e.g., cosmic rays) are implemented using the framework. In two companion papers, we describe (1) a new solver for the Einstein equations based on the Z4c formalism, and (2) a GRMHD solver in dynamical spacetimes also implemented using the framework, enabling new applications in numerical relativity. By adopting Kokkos, the code can be run on virtually any hardware, including CPUs, GPUs from multiple vendors, and emerging Advanced RISC Machine processors. AthenaK shows excellent performance and weak scaling, achieving over 1 billion cell updates per second for hydrodynamics in three dimensions on a single NVIDIA Grace Hopper processor. It does this with a typical parallel efficiency of 80% on 65,536 AMD GPUs on the OLCF Frontier system. Such performance portability enables AthenaK to leverage modern exascale computing systems for challenging applications in astrophysical fluid dynamics, numerical relativity, and multimessenger astrophysics.

79 ASTRONOMY AND ASTROPHYSICS↗