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Search indexed NASA NTRS and DOE OSTI research on propulsion, heat transfer, battery materials and energy systems. Follow report and document links to the original sources.

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At least 19 records
All sourcesNASA NTRSDOE OSTI
DOE OSTI2023

The influence of water, diet, and temperature on 87 Sr/ 86 Sr in fin spines of juvenile Atlantic Sturgeon Acipenser oxyrinchus oxyrinchus

Analysis of microchemistry in fish fin spines offers a non-lethal approach to address key questions relating to spatial patterns and habitat use of fish. Reconstruction of life history is based on chemical changes within calcified structures with an underlying assumption of elemental incorporation relative to environmental concentration. However, information is limited on the relative influence of water and diet concentrations of elements to corresponding concentrations within fin spines. Strontium (Sr) is commonly used in trace element studies because of its predictable changes within watersheds, with recent applications showing utility of 87 Sr/ 86 Sr for greater spatial resolution. Therefore, this study evaluated the influence of water and diet 87 Sr/ 86 Sr on pectoral fin spines of Atlantic Sturgeon A. oxyrinchus oxyrinchus in controlled laboratory experiments. In the first experiment, fish were exposed to a control, water spiked with 0.10 mg/L of 87 Sr or diet spiked with 0.25 µg/g or 0.50 µg/g of 87 Sr in replicated tanks for 12 weeks. In a second experiment, to determine the time duration required to occupy a different environment for fin spine chemistry to change, fish were maintained in water- or diet-spiked treatments for 1, 2, 3, or 6 weeks. Additionally, to determine if temperature has an influence on 87 Sr/ 86 Sr in fin spines, fish were held at 15 and 25°C for 12 weeks. Fin spines were analyzed using laser ablation multi-collector inductively coupled plasma mass spectrometry (LA-MC-ICP-MS), and water and diet samples were analyzed using solution based ICP-MS. Results from Experiment 1 indicate water is the primary contributor and diet a secondary contributor of 87 Sr/ 86 Sr in pectoral fin spines of Atlantic Sturgeon. Results from Experiment 2 indicate fin spine 87 Sr/ 86 Sr can be influenced by water after 1 week and diet after 12 weeks. Additionally, although sample size was limited (n=3), water temperature did not have an effect on 87 Sr/ 86 Sr fin spine chemistry. In conclusion, these results provide guidance for interpretation of 87 Sr/ 86 Sr in pectoral fin spines of sturgeon and indicate usefulness of the technique for retrospectively estimating movement and habitat use.

59 BASIC BIOLOGICAL SCIENCES↗
DOE OSTI2022

Protein drift-diffusion dynamics and phase separation in curved cell membranes and dendritic spines: Hybrid discrete-continuum methods

We develop methods for investigating protein drift-diffusion dynamics in heterogeneous cell membranes and the roles played by geometry, diffusion, chemical kinetics, and phase separation. Our hybrid stochastic numerical methods combine discrete particle descriptions with continuum-level models for tracking the individual protein drift-diffusion dynamics when coupled to continuum fields. We show how our approaches can be used to investigate phenomena motivated by protein kinetics within dendritic spines. The spine geometry is hypothesized to play an important biological role regulating synaptic strength, protein kinetics, and self-assembly of clusters. We perform simulation studies for model spine geometries varying the neck size to investigate how phase-separation and protein organization is influenced by different shapes. We also show how our methods can be used to study the roles of geometry in reaction-diffusion systems including Turing instabilities. Furthermore, our methods provide general approaches for investigating protein kinetics and drift-diffusion dynamics within curved membrane structures.

97 MATHEMATICS AND COMPUTING↗
DOE OSTI2026

SBND Shower Reconstruction with SPINE

The Short-Baseline Near Detector (SBND) is a liquid argon time projection chamber (LArTPC) neutrino detector in the Short-Baseline Neutrino (SBN) program at Fermilab. SBND is designed to investigate the Low-Energy Excess (LEE), an unexplained excess of electron-like events observed by previous short-baseline neutrino experiments that may point to physics beyond the Standard Model. In LArTPC detectors, precise shower reconstruction is essential for distinguishing electrons from photons, a key requirement for testing possible explanations of the LEE and improving $\nu_e$ event selection. In this poster, the reconstruction studies using the Scalable Particle Imaging with Neural Embeddings (SPINE), a machine learning based reconstruction framework for particle imaging detectors will be presented. SPINE combines sparse convolutional neural networks (CNN) and graph neural networks (GNN) to enable detailed reconstruction and characterization of neutrino interactions in LArTPC detectors. Shower calorimetry and kinematic reconstruction are performed in dedicated post-processing stages. Strong agreement between data and Monte Carlo simulation will be demonstrated, indicating high-precision detector calibration and reconstruction performance. The agreement between reconstructed and true electron shower energy will also be discussed, emphasizing the robustness of the shower reconstruction performance. These results demonstrate the unprecedented precision achievable with SPINE in SBND, highlighting their potential for future high-resolution neutrino measurements.

Fan, Castaly [Florida U.; Fermilab] (ORCID:0000000↗
DOE OSTI2020

Analysis of a preQ1-I riboswitch in effector-free and bound states reveals a metabolite-programmed nucleobase-stacking spine that controls gene regulation

Abstract Riboswitches are structured RNA motifs that recognize metabolites to alter the conformations of downstream sequences, leading to gene regulation. To investigate this molecular framework, we determined crystal structures of a preQ1-I riboswitch in effector-free and bound states at 2.00 Å and 2.65 Å-resolution. Both pseudoknots exhibited the elusive L2 loop, which displayed distinct conformations. Conversely, the Shine-Dalgarno sequence (SDS) in the S2 helix of each structure remained unbroken. The expectation that the effector-free state should expose the SDS prompted us to conduct solution experiments to delineate environmental changes to specific nucleobases in response to preQ1. We then used nudged elastic band computational methods to derive conformational-change pathways linking the crystallographically-determined effector-free and bound-state structures. Pathways featured: (i) unstacking and unpairing of L2 and S2 nucleobases without preQ1—exposing the SDS for translation and (ii) stacking and pairing L2 and S2 nucleobases with preQ1—sequestering the SDS. Our results reveal how preQ1 binding reorganizes L2 into a nucleobase-stacking spine that sequesters the SDS, linking effector recognition to biological function. The generality of stacking spines as conduits for effector-dependent, interdomain communication is discussed in light of their existence in adenine riboswitches, as well as the turnip yellow mosaic virus ribosome sensor.

59 BASIC BIOLOGICAL SCIENCES↗
DOE OSTI2025

Performance of Muon Neutrino Reconstruction at ICARUS using SPINE Machine Learning.

ICARUS is a liquid argon time projection chamber (LArTPC) neutrino experiment at Fermilab. Located ~600 m from the Booster Neutrino Beam (BNB) target, it serves as the far detector in the Short-Baseline Neutrino (SBN) Program. The primary objective of the SBN Program is to probe neutrino oscillation physics at short baselines using multiple detectors, including measurements of both muon neutrino disappearance and electron neutrino appearance. A key requirement for the neutrino oscillation measurements is robust event reconstruction, including accurate and precise particle identification (PID) and kinematic reconstruction across a wide range of topologies. To achieve the required performance, we employ the SPINE (“Scalable Particle Imaging with Neural Embeddings”) package, a state-of-the-art machine learning reconstruction framework. This talk presents the status of muon neutrino reconstruction using SPINE at ICARUS, including the evaluation of reconstruction performance that will enable the full physics program at ICARUS and at the SBN Program.

Totani, Dante [Colorado State U.] (ORCID:000000019↗
DOE OSTI2025

Single Photon Searches at ICARUS with SPINE

The MiniBooNE Low-Energy Excess (LEE) of electron-like events from the Booster Neutrino Beam (BNB) has puzzled neutrino physicists for decades. One possible explanation has been an unpredicted excess of neutral current (NC) $\Delta$ resonance interactions with a subsequent radiative decay. An increase in the rate of NC $\Delta\rightarrow N\gamma$ events by a factor of 3.18 could explain the LEE seen by MiniBooNE. ICARUS also sees neutrinos from the BNB and can check the rate of these single photon events. The SPINE particle physics reconstruction suite leverages deep neural networks (DNNs) to optimize particle reconstruction and identification in Liquid Argon Time Projection Chambers (LArTPCs). I present preliminary findings on the effectiveness of these machine learnign (ML) techniques for single photon event reconstruction at ICARUS.

Hausner, Harry [Fermilab] (ORCID:0000000188932280)↗
DOE OSTI2026

A Joint Search for Muon Neutrino Disappearance with the Short-Baseline Neutrino Program Using the SPINE Deep Learning-Based Reconstruction Package

We present the status of a joint search for muon neutrino disappearance in the Booster Neutrino Beam at Fermilab using the Short-Baseline Neutrino (SBN) Program's two-detector configuration, SBND and ICARUS. Charged-current interactions consistent with muon neutrinos and containing only a muon and at least one proton in the final state are reconstructed and selected using the SPINE deep learning-based particle reconstruction package. To exploit proton multiplicity information and enhance sensitivity to modeling effects, the selected sample is partitioned into exclusive channels with exactly one reconstructed proton and with more than one reconstructed proton. Comprehensive systematic uncertainties from the neutrino flux, interaction, and detector response are incorporated into the analysis, and the coverage of these systematic uncertainty models is validated using data from both detectors, including checks of near-far consistency in key kinematic and topology-sensitive observables. This analysis is intended for inclusion in SBN's first oscillation result.

Mueller, Justin [Fermilab]↗
DOE OSTI2026

DUNE: Michel Electron Selection with SPINE

This poster details the evaluation of a Michel electron selection algorithm centered on the neural network-based software SPINE (Scalable Particle Imageing with Neural Embeddings). The algorithm was developed and calibrated using simulated data from the SBND (Short-Baseline Neutrino Detector) experiment before being applied to simulated data from DUNE (Deep Underground Neutrino Experiment).

Wilson, Dante [U. Colorado, Boulder]↗
DOE OSTI2026

Michel Electron Selection with SPINE for DUNE Far Detector Simulation

Michel electrons are a valuable input for particle detector calibration due to their consistent kinetic energy distribution. This report details the evaluation of a Michel electron identification method's application to simulated data from the DUNE (Deep Underground Neutrino Experiment) far detector. This method, which relies on the neural network-based particle classification software SPINE (Scalable Particle Imaging with Neural Embeddings), was developed and calibrated using simulated data for the SBND (Short-Baseline Neutrino Detector) experiment before being applied to simulated DUNE data from a 1x2x6 subset of far detector modules.

Wilson, Dante [Colorado State U.]↗
DOE OSTI2023

Biomechanical Analysis of Multilevel Posterior Cervical Spinal Fusion Constructs

Study Design: Controlled Laboratory Study Objective: To compare multilevel posterior cervical fusion (PCF) constructs stopping at C7, T1, and T2 under cyclic load to determine the range of motion (ROM) between the lowest instrumented level and lowest instrumented-adjacent level (LIV-1). Summary of Background Data: PCF is a mainstay of treatment for various cervical spine conditions. The transition between the flexible cervical spine and rigid thoracic spine can lead to construct failure at the cervicothoracic junction. There is little evidence to determine the most appropriate level at which to stop a multilevel PCF. Methods: Fifteen human cadaveric cervicothoracic spines were randomly assigned to 1 of 3 treatment groups: PCF stopping at C7, T1, or T2. Specimens were tested in their native state, following a simulated PCF, and after cyclic loading. Specimens were loaded in flexion-extension), lateral bending, and axial rotation. Three-dimensional kinematics were recorded to evaluate ROM. Results: The C7 group had greater flexion-extension motion than the T1 and T2 groups following instrumentation (10.17±0.83 degree vs. 2.77±1.66 degree and 1.06±0.55 degree, P <0.001), and after cyclic loading (10.42±2.30 degree vs. 2.47±0.64 degree and 1.99±1.23 degree, P <0.001). There was no significant difference between the T1 and T2 groups. The C7 group had greater lateral bending ROM than both thoracic groups after instrumentation (8.81±3.44 degree vs. 3.51±2.52 degree, P =0.013 and 1.99±1.99 degree, P =0.003) and after cyclic loading. The C7 group had greater axial rotation motion than the thoracic groups (4.46±2.27 degree vs. 1.26±0.69 degree, P =0.010; and 0.73±0.74 degree, P =0.003) following cyclic loading. Conclusion: Motion at the cervicothoracic junction is significantly greater when a multilevel PCF stops at C7 rather than T1 or T2. This is likely attributable to the transition from a flexible cervical spine to a rigid thoracic spine. Although this does not account for in vivo fusion, surgeons should consider extending multilevel PCF constructs to T1 when feasible. Level of Evidence: Not applicable.

Neurosciences & Neurology↗
DOE OSTI2020

High-density, fail-in-place switches for computer and data networks

A structure for a network switch. The network switch may include a plurality of spine chips arranged on a plurality of spine cards, where one or more spine chips are located on each spine card; and a plurality of leaf chips arranged on a plurality of leaf cards, wherein one or more leaf chips are located on each leaf card, where each spine card is connected to every leaf chip and the plurality of spine chips are surrounded on at least two sides by leaf cards.

42 ENGINEERING↗
DOE OSTI2020

The Gemini Planet Imager View of the HD 32297 Debris Disk

We present new H-band scattered light images of the HD 32297 edge-on debris disk obtained with the Gemini Planet Imager. The disk is detected in total and polarized intensity down to a projected angular separation of 0.″15, or 20 au. On the other hand, the large-scale swept-back halo remains undetected, likely a consequence of its markedly blue color relative to the parent body belt. We analyze the curvature of the disk spine and estimate a radius of ≈100 au for the parent body belt, smaller than past scattered light studies but consistent with thermal emission maps of the system. We employ three different flux-preserving post-processing methods to suppress the residual starlight and evaluate the surface brightness and polarization profile along the disk spine. Unlike past studies of the system, our high-fidelity images reveal the disk to be highly symmetric and devoid of morphological and surface brightness perturbations. We find the dust scattering properties of the system to be consistent with those observed in other debris disks, with the exception of HR 4796. Finally, we find no direct evidence for the presence of a planetary-mass object in the system.

79 ASTRONOMY AND ASTROPHYSICS↗
DOE OSTI2024

Cooling and instabilities in colliding radiative flows with toroidal magnetic fields

ABSTRACT We report on the results of a simulation-based study of colliding magnetized plasma flows. Our set-up mimics pulsed power laboratory astrophysical experiments but, with an appropriate frame change, is relevant to astrophysical jets with internal velocity variations. We track the evolution of the interaction region where the two flows collide. Cooling via radiative losses is included in the calculation. We systematically vary plasma beta (βm) in the flows, the strength of the cooling (Λ0), and the exponent (α) of temperature dependence of the cooling function. We find that for strong magnetic fields a counter-propagating jet called a ‘spine’ is driven by pressure from shocked toroidal fields. The spines eventually become unstable and break apart. We demonstrate how formation and evolution of the spines depend on initial flow parameters and provide a simple analytical model that captures the basic features of the flow.

79 ASTRONOMY AND ASTROPHYSICS↗