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At least 19 records

Data for Spatial Analysis of Cell Patterning to Aid Genetic and Phenotypic Understanding of Grass Stomatal Density: A Case Study in Maize

Biological processes involve complex hierarchies where composite traits result from multiple component traits. However, holistically understanding of how sets of component traits interact to underpin genotype-to-phenotype relationships is generally lacking. Stomatal density (SD) is a tractable model system for exploring how high-throughput phenotyping (HTP) data could be exploited by a new spatial analysis approach to better understand a developmentally and functionally important trait. SD is a composite trait, resulting from various components related to cell identity and size, which are themselves governed by a series of spatio-developmental processes. Data from 192 recombinant inbred lines of maize [Zea mays (L.)] were analyzed by a new stomatal patterning phenotype (SPP) to (1) describe the average spatial probability distribution of the nearest neighboring stomata; (2) derive a core set of component traits related to cell size, cell packing, and positional probabilities; (3) build a structural equation model of component traits underlying SD; and (4) identify stomatal patterning quantitative trait loci (QTL). The core set of SPP-derived traits explained 74% of the variation in SD. Analyzing SPP component traits allowed some loci previously identified as generic SD QTL to be recognized as specific to lateral versus longitudinal elements of stomatal patterning. Therefore, this study highlights how novel insights can be gained by decomposing a composite trait (e.g., SD) into a set of component traits that were present in HTP data but not previously exploited.

AI/ML

Photomorphic analysis techniques: An interim spatial analysis using satellite remote sensor imagery and historical data

The use of machine scanning and/or computer-based techniques to provide greater objectivity in the photomorphic approach was investigated. Photomorphic analysis and its application in regional planning are discussed. Topics included: delineation of photomorphic regions; inadequacies of existing classification systems; tonal and textural characteristics and signature analysis techniques; pattern recognition and Fourier transform analysis; and optical experiments. A bibliography is included.

Keuper, H. R.

Spatial analysis in recreation resource management for the Berlin Lake Reservoir Project

Spatial analysis of geographic information systems and the acquisition and use of remotely-sensed data within the U.S. Army Corps of Engineers is an emerging Technology Work units have been developed under te Remote Sensing Research and Development Program, which are most relevant to the productive needs of the Corps in both the military and civil works missions. Corps participation in the SPOT simulation champaign is one such example of this research. This paper describes the application of spatial analysis and remote sensing in recreation resource managmaster planning at the Berlin Lake Reservoir Project within the Pittsburgh District. SPOT simulator data was acquired over Berlin Lake, Site No. 10, on July 8, 1983. The first part of this paper describes the background of the U.S. Army Corps of Engineers and the Berlin Lake project, the geographic information system being developed, and the planned use of SPOT and similar data. The remainder of the paper describes the results on an analysis of the simulated SPOT data conducted at the NASA Goddard Institut for Space Studies.

Edwardo, H. A.

Rapid spatial analysis of surrogate TRISO fuel particles using laser-induced breakdown spectroscopy image analysis

Laser-induced breakdown spectroscopy (LIBS) mapping enables rapid elemental and spatial analysis of solid samples. In this work, surrogate TRi-structural ISOtropic (TRISO) particles with various layers consisting of Zr, W, C, and Si were used to demonstrate the use of a new thickness measurement tool developed to analyze elemental images generated from LIBS maps. Zr particles with varying outer-layer thicknesses ranging from 16 to 32 μm were measured with scanning electron microscopy with energy dispersive spectroscopy (SEM-EDS) and LIBS with both a complementary metal-oxide-semiconductor (CMOS) detector and an intensified charged coupled device (ICCD) detector. LIBS maps of particles were completed using CMOS and ICCD spectrometers with effective spatial resolutions of 4 and 2 μm, respectively. The novel thickness measurement tool identified layer regions within a LIBS map and then identified the locations of the boundaries between these layers. The tool then generated up to 1000 random profiles stemming radially from the center region, which were used to measure the layer thickness/radius. This image analysis tool demonstrated LIBS's ability to provide values comparable with SEM-EDS (3.7% relative difference) along with a 95% reduction in measurement time. Furthermore, the precision of these measurements was on par with the SEM-EDS measurements at <15% relative standard deviation. Following the analysis of the Zr particles, W particles with increased complexity (e.g., five versus three layers) were analyzed using both the CMOS and ICCD spectrometers simultaneously. The spatial dimensions were extracted with an average relative difference of 2.7% and an average relative standard deviation of 9%.

Andrews, Hunter B. [Oak Ridge National Laboratory

VECTAN II - A computer program for the spatial analysis of the vectorcardiogram

This paper presents the operation of a digital computer program, VECTAN II, for the spatial analysis of the vectorcardiogram (VCG). The program incorporates a unique waveform recognition algorithm based on the spatial vector length which has been shown to perform better than previous algorithms. The waveform analysis employed by the program considers the vectorcardiogram as a three dimensional entity rather than as scalar or planar representations. VECTAN II is designed chiefly to measure and quantify the VCG response of normal subjects to a controlled stress by analyzing one VCG complex every five seconds throughout a long experiment. The program has been used to analyze data from the NASA Johnson Space Center Cardiovascular Laboratory, from the pre- and postflight medical examinations of the Apollo 15, 16 and 17 crewmen, and from onboard Skylab experiments.

Golden, D. P., Jr.

Spatial analysis of cell patterning to aid genetic and phenotypic understanding of grass stomatal density: A case study in maize

Biological processes involve complex hierarchies where composite traits result from multiple component traits. However, holistically understanding of how sets of component traits interact to underpin genotype-to-phenotype relationships is generally lacking. Stomatal density (SD) is a tractable model system for exploring how high-throughput phenotyping (HTP) data could be exploited by a new spatial analysis approach to better understand a developmentally and functionally important trait. SD is a composite trait, resulting from various components related to cell identity and size, which are themselves governed by a series of spatio-developmental processes. Data from 192 recombinant inbred lines of maize [Zea mays (L.)] were analyzed by a new stomatal patterning phenotype (SPP) to (1) describe the average spatial probability distribution of the nearest neighboring stomata; (2) derive a core set of component traits related to cell size, cell packing, and positional probabilities; (3) build a structural equation model of component traits underlying SD; and (4) identify stomatal patterning quantitative trait loci (QTL). The core set of SPP-derived traits explained 74% of the variation in SD. Analyzing SPP component traits allowed some loci previously identified as generic SD QTL to be recognized as specific to lateral versus longitudinal elements of stomatal patterning. Therefore, this study highlights how novel insights can be gained by decomposing a composite trait (e.g., SD) into a set of component traits that were present in HTP data but not previously exploited.

59 BASIC BIOLOGICAL SCIENCES

Toward the modeling of land use change: A spatial analysis using remote sensing and historical data

It was hypothesized that the chronological observation of land use change could be shown to follow a predictable pattern and these patterns could be correlated with other statistical data to develop transition probabilities suitable for modeling purposes. A literature review and preliminary research, however, indicated a totally stochastic approach was not practical for simulating land use change and thus a more deterministic approach was adopted. The approach used assumes the determinants of the land use conversion process are found in the market place, where land transactions among buyers and sellers occur. Only one side of the market transaction process is studied, however, namely, the purchaser's desires in securing an ideal or suitable site. The problem was to identify the ideal qualities, quantities or attributes desired in an industrial site (or housing development), and to formulate a general algorithmic statement capable of identifying potential development sites. Research procedures involved developing a list of variables previously noted in the literature to be related to site selection and streamlining the list to a set suitable for statistical testing. A sample of 157 industries which have located (or relocated) in the 16-county Knoxville metropolitan region since 1950 was selected for industrial location analysis. Using NASA color infrared photography and Tennessee Valley Authority historical aerial photography, data were collected on the spatial characteristics of each industrial location event. These data were then subjected to factor analysis to determine the interrelations of variables.

Honea, R. B.

An Empirical Bayes Approach to Spatial Analysis

Multi-channel LANDSAT data are collected in several passes over agricultural areas during the growing season. How empirical Bayes modeling can be used to develop crop identification and discrimination techniques that account for spatial correlation in such data is considered. The approach models the unobservable parameters and the data separately, hoping to take advantage of the fact that the bulk of spatial correlation lies in the parameter process. The problem is then framed in terms of estimating posterior probabilities of crop types for each spatial area. Some empirical Bayes spatial estimation methods are used to estimate the logits of these probabilities.

Morris, C. N.

Ecosystem Impacts of Woody Encroachment In Texas: A Spatial Analysis Using AVIRIS

Woody encroachment, the increase of woody plant density relative to herbaceous vegetation, has been documented in drylands of Texas as well as worldwide (Archer 1994, Harrington and Harman 1995, Moleele et al. 2002). Over-grazing, fire suppression and climate change are implicated in the shift from open grasslands to ecosystems now populated by trees and shrubs (Scholes and Archer 1997, Archer et al. 2001), such as Prosopis glandulosa var. glandulosa (honey mesquite) in north Texas (Teague et al. 1997, Ansley et al. 2001, Asner et al. 2003a). Several studies have examined changes in ecosystem properties accompanying woody vegetation encroachment in the Southwest U.S., with research focused on increases in plant and soil carbon (C) and nitrogen (N) stores (Hoffman and Jackson 2000, Asner et al. 2003a), isotopic shifts in these pools (Boutton 1999, Archer et al. 2001), and increases in N cycling rates (Rundel et al. 1982, Hibbard et al. 2001). However, little is known regarding the impact of woody encroachment on N trace gas emissions from dryland regions such as Texas. NOx is produced in the soil during the processes of nitrification and denitrification (Firestone and Davidson 1989). The total N efflux from soils is most directly influenced by the internal cycling of N, which at a regionalscale, is controlled by the inputs and availability of N from vegetation via litterfall and subsequent decomposition (Robertson et al. 1989). Although plot-scale studies are critical to understanding controls over N oxide emissions, regionalization of the measurements is impeded by spatial variation in the factors contributing most to N cycling processes: soil properties (affecting soil moisture regimes and N stocks) and vegetation cover (affecting litter inputs and N uptake). While broad patterns in ecosystem structure and vegetation composition co-vary with general patterns of trace gas emissions (Matson 1997), there is no easily measured index of N availability that can be applied for regional-scale studies of N oxide fluxes. Remote sensing is arguably the only approach available to develop a spatially-explicit understanding of ecosystem processes. More specifically, remotely detectable spatial patterns in the distal controls over soil N properties, such as vegetation cover, land use and soil type (Robertson et al. 1989), should be exploited for regional studies of N oxide emissions. The woody encroachment phenomenon provides an opportunity to test the strength of the relationship between N oxide emissions and those factors controlling the fluxes that can be remotely measured. If such linkages can be firmly established, and if the spatial pattern of distal controls is relevant, then the combination of field measurements and remote sensing offers to improve regional-scale N oxide estimates. The paper presents the utility of linking field based sampling of soil NOx emissions with very high resolution remote sensing estimates of woody vegetation cover from the NASA AVIRIS, Airborne Visible-Infrared Imaging Spectrometer (Green et al. 1998, Asner and Green 2001) and automated spectral mixture analysis (Asner and Lobell 2000, Asner and Heidebrecht 2002) that provide a means to spatially extrapolate soil NOx emissions to the regional scale.

Martin, Roberta E.

Near ground level sensing for spatial analysis of vegetation

Measured changes in vegetation indicate the dynamics of ecological processes and can identify the impacts from disturbances. Traditional methods of vegetation analysis tend to be slow because they are labor intensive; as a result, these methods are often confined to small local area measurements. Scientists need new algorithms and instruments that will allow them to efficiently study environmental dynamics across a range of different spatial scales. A new methodology that addresses this problem is presented. This methodology includes the acquisition, processing, and presentation of near ground level image data and its corresponding spatial characteristics. The systematic approach taken encompasses a feature extraction process, a supervised and unsupervised classification process, and a region labeling process yielding spatial information.

Sauer, Tom

TRMM Surface Backscatter Measurements - Temporal and Spatial Analysis: Inter-Comparison with NSCAT

Global rainfall is the primary redistributor of earth's energy by the process of latent heat release. This forms the main driving force for the tropical circulation, which in turn impacts the global circulation .through transient events-such as El Nino. Hence, more precise and long-term time series of the rainfall and its variability is crucial to the understanding and prediction of the global climate and climate change. The Precipitation Radar (PR) abroad the US/Japan Tropical Rainfall Measuring Mission (TRMM) is the first radar ever launched into space that measures detailed vertical profiles of rain intensity over the tropics. One of the challenges in estimating rainfall from spaceborne radars is the presence of attenuation at frequencies, such as 14 GHz of the TRMM PR and future planned systems at this and higher frequencies. A common approach in current rainfall retrieval algorithms is to employed the path integrated attenuation (PIA) as a constraint to the retrieval, and hence overcome errors in the radar calibration or in the assumed rainfall parameters. PIA can either be derived from a radiometer or from the surface reference technique, in which a clear air radar measurement is compared with the measurement in the raining area. The current TRMM 2A21 PIA data product makes use of both a temporal and spatial clear air database for comparison to rainy measurements. In this paper we present results from analysis of TRMM surface backscatter cross-section (sigmaO) measurements from Nov 97-Feb99, and a comparison with sigmaO measurements obtained by the NASA Scatterometer (NSCAT) between Sept96-June97. Measurements for a given month from both instruments are compiled on a 1 deg. (lat.) x 1 deg. (lon.) x 1 hr. grid. This enables TRMM--NSCAT comparison and the investigation of seasonal and diurnal trends in both data sets. From preliminary analysis of TRMM sigmaO's we have decided not to treat the ocean as a single homogeneous region but to select a number of ocean sub-regions and individually analyze their trends. Likewise, and in a similar approach to previous studies of Seasat over-land data, we have selected a number of over-land regions for study. From said sigmaO maps and regional trend analysis we investigate possible sources of trends and variability. In addition, we study the effects of TRMM PR sensitivity through the PR "possible rain" class. Given NSCAT's inability to flag rain contaminated measurements we are able to gauge the impact of rain contamination on NSCAT monthly sigmaO maps, using TRMM measurements. The research described in this paper was carried out by the Jet Propulsion Laboratory, California Institute of Technology, under contract with the National Aeronautics and Space Administration (NASA), U.S.A.

Im, Eastwood

Spatial Analysis of Great Lakes Regional Icing Cloud Liquid Water Content

Abstract Clustering of cloud microphysical conditions, such as liquid water content (LWC) and drop size, can affect the rate and shape of ice accretion and the airworthiness of aircraft. Clustering may also degrade the accuracy of cloud LWC measurements from radars and microwave radiometers being developed by the government for remotely mapping icing conditions ahead of aircraft in flight. This paper evaluates spatial clustering of LWC in icing clouds using measurements collected during NASA research flights in the Great Lakes region. We used graphical and analytical approaches to describe clustering. The analytical approach involves determining the average size of clusters and computing a clustering intensity parameter. We analyzed flight data composed of 1-s-frequency LWC measurements for 12 periods ranging from 17.4 minutes (73 km) to 45.3 minutes (190 km) in duration. Graphically some flight segments showed evidence of consistency with regard to clustering patterns. Cluster intensity varied from 0.06, indicating little clustering, to a high of 2.42. Cluster lengths ranged from 0.1 minutes (0.6 km) to 4.1 minutes (17.3 km). Additional analyses will allow us to determine if clustering climatologies can be developed to characterize cluster conditions by region, time period, or weather condition. Introduction

Ryerson, Charles C.

Spatial analysis of IRAS observations of nearby spirals

The unbiased survey of the infrared sky carried out by the Infrared Astronomy Satellite (IRAS) satellite has greatly accelerated advances in understanding the dust component of our own and external galaxies. However, most extragalactic studies to date have been based on the IRAS Point Source Catalog (PSC), which has two serious limitations. First, in sources where a significant fraction of the flux is extended, significant errors may result from using PSC fluxes in comparative studies, and these errors could be systematic if the tendency to be non-pointlike depends on physical properties of the galaxy. Additionally, use of PSC fluxes rules out any direct investigation of the spatial distribution of the IRAS emission from disks in external galaxies. Since work on the Galactic IRAS results has shown that very different physical processes can make varying contributions to the observed flux, it is important to look at a wide sample of galaxies with some spatial resolution to study the relative dominance of these processes under a variety of conditions. Here, researchers report on work they are doing to carry out this program for many nearby spirals, using an analysis package that was developed for this purpose. Researchers carried out analysis for a sample of 121 nearby spirals. The fraction of the flux contained in a point source varies from 0 to 1 across the sample, all of which are well resolved at their nominal optical diameters. There is no evidence that the galaxies of smaller angular size are less likely to be resolved by IRAS at this level. The program gives results which are quite repeatable from scan to scan; the fraction f (point source flux over total flux) at 60 microns has typical errors of 0.03 when different scans are combined. Approximately two-thirds of the sample have more flux in the extended than in the nuclear component. There is a tendency for earlier-type spirals to be less centrally concentrated, but this effect is slight and the degree of variation is large for all types. Barred spirals are also found across the spectrum of f, but are much more likely to have little or no nuclear emission.

Ball, Roger

Spatial analysis of storm depths from an Arizona raingage network

Eight years of summer rainstorm observations are analyzed by a dense network of 93 raingages operated by the U.S. Department of Agriculture, Agricultural Research Service, in the 150 km Walnut Gulch experimental catchment near Tucson, Arizona. Storms are defined by the total depths collected at each raingage during the noon-to-noon period for which there was depth recorded at any of the gages. For each of the resulting 428 storm days, the gage depths are interpolated onto a dense grid and the resulting random field analyzed to obtain moments, isohyetal plots, spatial correlation function, variance function, and the spatial distribution of storm depth.

Fennessey, N. M.

A Spatial Analysis and Modeling System (SAMS) for environment management

This is a proposal to develop a uniform global environmental data gathering and distribution system to support the calibration and validation of remotely sensed data. SAMS is based on an enhanced version of FE MA's Integrated Emergency Management Information Systems and the Department of Defense's Air Land Battlefield Environment Software Systems. This system consists of state-of-the-art graphics and visualization techniques, simulation models, database management and expert systems for conducting environmental and disaster preparedness studies. This software package will be integrated into various Landsat and UNEP-GRID stations which are planned to become direct readout stations during the EOS timeframe. This system would be implemented as a pilot program to support the Tropical Rainfall Measuring Mission (TRMM). This will be a joint NASA-FEMA-University-Industry project.

Vermillion, Charles H.

Spatial Analysis and Modeling Systems (SAMS)

The objective is to develop a uniform environmental data gathering and distribution system to support (1) emergency management for environmental disasters, and (2) the calibration and validation of remotely sensed data. Initial activities will be to select a data test site and to demonstrate multi-discipline applications using simulated or satellite data in a non real-time mode. Rainfall and flooding are chosen as the testbeds for the SAMS concept because of the abundance of data and the availability of models. The capability to display and process GOES data and analyze GOES generated rain-rate maps will be integrated into SAMS.

Vermillion, Charles

A Spatial Analysis and Modeling System (SAMS) for environment management

This is a proposal to develop a uniform global environmental data gathering and distribution system to support the calibration and validation of remotely sensed data. SAMS is based on an enhanced version of FEMA's Integrated Emergency Management Information Systems and the Department of Defense's Air land Battlefield Environment Software Systems. This system consists of state-of-the-art graphics and visualization techniques, simulation models, database management and expert systems for conducting environmental and disaster preparedness studies. This software package will be integrated into various Landsat and UNEP-GRID stations which are planned to become direct readout stations during the EOS (Earth Observing System) timeframe. This system would be implemented as a pilot program to support the Tropical Rainfall Measuring Mission (TRMM). This will be a joint NASA-FEMA-University-Industry project.

Stetina, Fran