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At least 19 records

Accidental Father-to-Son HIV-1 Transmission During the Seroconversion Period

A 4-year-old child born to an HIV-1 seronegative mother was diagnosed with HIV-1, the main risk factor being transmission from the child's father who was seroconverting at the time of the child's birth. In the context of a forensic investigation, here we aimed to identify the source of infection of the child and date of the transmission event. Samples were collected from the father and child at two time points about 4 years after the child's birth. Partial segments of three HIV-1 genes (gag, pol, and env) were sequenced and maximum likelihood (ML) and Bayesian methods were used to determine direction and estimate date of transmission. Neutralizing antibodies were determined using a single cycle assay. Bayesian trees displayed a paraphyletic–monophyletic topology in all three genomic regions, with the father's host label at the root, which is consistent with father-to-son transmission. ML trees found similar topologies in gag and pol and a monophyletic–monophyletic topology in env. Analysis of the time of the most recent common ancestor of each HIV-1 gene population indicated that the child was infected shortly after the father. Consistent with the infection history, both father and son developed broad and potent HIV-specific neutralizing antibody responses. In conclusion, the direction of transmission implicated the father as the source of transmission. Transmission occurred during the seroconversion period when the father was unaware of the infection and was likely accidental. This case shows how genetic, phylogenetic, and serological data can contribute for the forensic investigation of HIV transmission.

60 APPLIED LIFE SCIENCES↗

A Father’s Day Tribute Father-son Nobel Prize-winning physicists worked together at the Lab

Partners in physics during the World War II years, father and son Niels and Aage Bohr worked side by side on the Lab’s top-secret effort to create the first atomic bombs. Arriving in Los Alamos in late 1943, Aage was just 21 years old. He had been studying physics to follow in the footsteps of his father, who had won a Nobel Prize in 1922. Aage’s higher education, however, had been interrupted by the rapid spread of Nazism in Europe. The Bohrs, who had Jewish heritage, fled their native Denmark to escape persecution, eventually arriving in Los Alamos to aid in the creation of weapons that would help end the war. Their story is part of the collections at the National Security Research Center, which is the Lab’s classified library and also houses unclassified historic materials. While at Los Alamos, Niels and Aage were accorded VIP status because of the family’s scientific renown and given new names to protect their identities: Aage was James Baker, while his father was Nicholas Baker, but the scientific community called him Uncle Nick. Whether called Niels and Aage or Nick and Jim, father and son were inseparable.

71 CLASSICAL AND QUANTUM MECHANICS, GENERAL PHYSIC↗

Harold Agnew’s son gives Lab never-before-seen photos, documents

When I arrived at Los Alamos in 2003, the Laboratory’s long-retired third director was still a very popular figure. He was so popular, in fact, that he enjoyed an honor typically reserved for only the most adored and outrageous pop stars and Brazilian footballers: He was known by one name. Back then, most Lab staff knew exactly who you were talking about when you referred to “Harold.” Harold Agnew was at the helm from 1970 – 1979, though his career here began when he was still just in his 20s. He was recruited to work on the U.S. government’s top-secret project to build the first atomic bombs and help bring a swift end to World War II. Harold died in 2013 at 92, but March 28 would have been his 100th birthday. Although he’s no longer here to celebrate with us, we can gain inspiration by remembering his remarkable life of service – and mischief. Both are now well-documented in the collections of the National Security Research Center (NSRC), the Lab’s classified library, which also includes unclassified pieces of our history. The NSRC’s newest addition to its collections comes from Harold’s son John Agnew, who just recently gave me a box of about 250 images and about 15 documents that belonged to his dad. The contents are nothing short of remarkable, one-of-a-kind, and in some cases, hilarious. As the NSRC staff are accessioning these pieces into the Lab’s collections, looking through these materials is a chance for me to remember our former director and my friend.

96 KNOWLEDGE MANAGEMENT AND PRESERVATION↗

Analytical Modeling of Triple-Metal Hetero-Dielectric DG SON TFET

In this paper, a 2-D analytical model of triple-metal hetero-dielectric DG TFET is presented by combining the concepts of triple material gate engineering and hetero-dielectric engineering. Three metals with different work functions are used as both front- and back gate electrodes to modulate the barrier at source/channel and channel/drain interface. In addition to this, front gate dielectric consists of high-K HfO{sub 2} at source end and low-K SiO{sub 2} at drain side, whereas back gate dielectric is replaced by air to further improve the ON current of the device. Surface potential and electric field of the proposed device are formulated solving 2-D Poisson’s equation and Young’s approximation. Based on this electric field expression, tunneling current is obtained by using Kane’s model. Several device parameters are varied to examine the behavior of the proposed device. The analytical model is validated with TCAD simulation results for proving the accuracy of our proposed model.

75 CONDENSED MATTER PHYSICS, SUPERCONDUCTIVITY AND↗

Studies of Chiral-Odd GPDs in Hard Exclusive Pseudoscalar Me- son Production

Deeply virtual exclusive electroproduction of pseudoscalar mesons in hard scattering processes provides a unique avenue to access chiral-odd GPDs. The latter enter the soft matrix elements in transverse virtual photon-proton scattering. Transverse photon polarization dominates ?0, ?, and K production in the multi GeV region owing to the fact that t-channel meson pole contribution either does not occur (?0 and ?), or is predicted to be relatively small (K+,Ko). We will present ongoing studies of spin and azimuthal asymmetries in hard exclusive production of pseudoscalar mesons at Jefferson Lab, and proposed future measurements to study chiral-odd GPDs at JLab and Electron Ion Collider. Combination of measurements of cross sections, spin and azimuthal asymmetries with a longitudinally polarized beam and both unpolarized and longitudinally polarized proton targets for ?o, ? and K+,Ko electroproduction will provide a detailed test of the mechanism for pseudoscalar meson electroproduction including strangeness, and allow to perform flavor decomposition of underlying chiral-odd GPDs.

Avagyan, Harutyun↗

Transient exposure to proteins SOX2, Oct-4, and NANOG immortalizes exhausted tumor-infiltrating CTLs

Adoptive cell transfer therapy (ACT) is one of the most promising immunotherapies against cancer, using tumor-infiltrating lymphocytes (TILs) expanded in vitro. Tumor-infiltrating cytotoxic T lymphocytes (TICTLs) play a prominent role in cancer control. TILs terminally differentiate in response to immunosuppressive environments within tumors, and thus are slow to expand and challenging to maintain both in vitro and in patients. To reverse this exhaustion, we utilize a nuclear protein delivery system that exposes TICTLs to the SOX2, Oct-4, and NANOG (SON) proteins. Unlike activated naïve CTLs (effector CTLs), TICTLs respond favorably to SON treatment, exhibiting steady proliferation and extended survivability independent of cytokine and antigen stimulation. Though TICTLs treated with SON (STICTLs) still express T cell receptors as well as other critical downstream components, they are unresponsive to antigen challenge, suggesting that SON treatment regresses TICTLs into a state similar to that of an early double negative T cell. Our findings indicate the TICTL response to SON proteins is unique when compared to effector CTLs, suggesting TICTLs may be sensitive to regulation by other lineage-specific transcription factors and opening a promising new avenue into cancer immunotherapy. To our knowledge, this is the first report on lineage reprogramming of TILs using protein stem cell transcription factors delivered directly to the nucleus. -- Highlights: •TICTLs are sensitive to reprogramming by proteins of stem cell transcription factors, but effector CTLs were not. •TICTLs are regressed back to an early double negative T cell stage. •TCR signaling is deregulated by these transcription factors.

60 APPLIED LIFE SCIENCES↗

Soil carbon change in intensive agriculture after 25 years of conservation management

Changes in soil organic carbon (SOC) and nitrogen (SON) are strongly affected by land management but few long-term comparative studies have surveyed changes throughout the whole soil profile. We quantified 25-year SOC and SON changes to 1 m in 10 replicate ecosystems at an Upper Midwest, USA site. We compared four annual cropping systems in maize (Zea mays)-soybean (Glycine max)-winter wheat (Triticum aestivum) rotations, each managed differently (Conventional, No-till, Reduced input, and Biologically based); in three managed perennial systems (hybrid Poplar (Populus × euramericana), Alfalfa (Medicago sativa), and Conifer (Pinus spp.); and in three successional systems (Early, Mid- and Late succession undergoing a gradual change in species composition and structure over time). Both Reduced input and Biologically based systems included winter cover crops. Neither SOC nor SON changed significantly in the Conventional or Late successional systems over 25 years. All other systems gained SOC and SON to different degrees. SOC accrual was fastest in the Early successional system (0.8 ± 0.1 Mg C ha –1 y –1 ) followed by Alfalfa and Conifer (avg. 0.7 ± 0.1 Mg C ha –1 y –1 ), Poplar, Reduced input, and Biologically based systems (avg. 0.4 ± 0.1 Mg C ha –1 y –1 ), and Mid-successional and No-till systems (0.3 and 0.2 Mg C ha –1 y –1 , respectively). Over the most recent 12 years, rates of SOC accrual slowed in all systems except Reduced input and Mid-successional. There was no evidence of SOC loss at depth in any system, including No-till. Rates of SON accrual ranged from 64.7 to 0.8 kg N ha –1 y –1 in the order Alfalfa ≥ Early successional > Reduced input and Biologically based ≥ Poplar > No-till and Conifer > Mid-successional systems. Pyrogenic C levels in the Conventional, Early, and Late successional systems were similar despite 17 years of annual burning in the Early successional system (~ 15 % of SOC to 50 cm, on average, and ~40 % of SOC from 50 to 100 cm). Results underscore the importance of cover crops, perennial crops, and no-till options for sequestering whole profile C in intensively managed croplands.

60 APPLIED LIFE SCIENCES↗

Amino acid δ 15 N indicates lack of N isotope fractionation during soil organic nitrogen decomposition

The interpretation of natural abundance δ 15 N in soil profiles and across ecosystems is confounded by a lack of understanding of possible N isotope fractionation associated with soil organic nitrogen (SON) decomposition. We analyzed the δ 15 N of hydrolysable amino acids to test the extent of fractionation associated with the depolymerization of peptides to amino acids and the mineralization of amino acids to NH 4 + (ammonification). Most amino acids are both synthesized and degraded by microbes, complicating interpretation of their δ 15 N. However, the “source” amino acids phenylalanine and hydroxyproline are degraded and recycled but not resynthesized. We therefore used their δ 15 N to isolate the effects of N isotope fractionation during SON depolymerization and ammonification. We used complementary field and laboratory approaches to evaluate the change in amino acid δ 15 N during decomposition. First, we measured amino acid δ 15 N changes with depth in the organic horizons of podzolic soils collected from the Newfoundland and Labrador Boreal Ecosystem Latitudinal Transect (NL-BELT), Canada. The δ 15 N of most amino acids increased with depth by 3–7‰, similar to the increase in bulk δ 15 N. However, the δ 15 N of the “source” amino acids did not change with depth, indicating lack of N isotope fractionation during their depolymerization and ammonification. Second, we assessed the change in amino acid δ 15 N following 400 days of laboratory incubation. This approach isolated the effect of decomposition on δ 15 N by eliminating plant N uptake and reducing leaching of N from the soil. Amino acid δ 15 N did not change during incubation despite extensive turnover of the amino acid pool, supporting our conclusion of a lack of N isotope fractionation during SON decomposition. Finally, our results indicate the often-observed trend of increasing δ 15 N with soil depth likely results from the mycorrhizally-mediated transfer of 14 N from depth to the surface and accumulation of 15 N-enriched necromass of diverse soil microbes at depth, rather than as a direct result of SON decomposition.

59 BASIC BIOLOGICAL SCIENCES↗

Development of a Supercharged Octane Number and a Supercharged Octane Index

Gasoline knock resistance is characterized by the Research and Motor Octane Number (RON and MON), which are rated on the CFR octane rating engine at naturally aspirated conditions. However, modern automotive downsized boosted spark ignition (SI) engines generally operate at higher cylinder pressures and lower temperatures relative to the RON and MON tests. Using the naturally aspirated RON and MON ratings, the octane index (OI) characterizes the knock resistance of gasolines under boosted operation by linearly extrapolating into boosted “beyond RON” conditions via RON, MON, and a linear regression K factor. Using OI solely based on naturally aspirated RON and MON tests to extrapolate into boosted conditions can lead to significant errors in predicting boosted knock resistance between gasolines due to non-linear changes in autoignition and knocking characteristics with increasing pressure conditions. Here, a new “Supercharged Octane Number” (SON) method was developed on the CFR engine at increased intake pressures, which improved the correlation to boosted knock-limited automotive SI engine data over RON for several surrogate fuels and gasolines, including five “Co-Optima” RON 98 fuels and an E10 regular grade gasoline. Furthermore, the conventional OI was extended to a newly introduced Supercharged Octane Index (OI S ) based on SON and RON, which significantly improved the correlation to fuel knock resistance measurements from modern boosted SI engine knock-limited spark advance tests. This demonstrated the first proof of concept of a SON and OI S to better characterize a fuel’s knock resistance in modern boosted SI engines.

42 ENGINEERING↗

Life-cycle greenhouse gas emissions of corn kernel fiber ethanol

Corn kernel fiber ethanol that can be produced concurrently with corn starch ethanol has recently been approved as cellulosic biofuel in the USA, suggesting that fiber ethanol could be eligible for a higher credit price than conventional starch ethanol due to its anticipated lower greenhouse gas (GHG) emissions. A life-cycle analysis was conducted to quantify ethanol's GHG emissions. Here we show that fiber ethanol's life-cycle GHG emissions (36-39 g CO(2)e MJ(-1)) are close to meeting the US cellulosic biofuel's legislative mandate of 60% GHG emissions reduction relative to gasoline (similar to 94 g CO(2)e MJ(-1)), with slightly lower emissions under the nth plant mature fiber technology than under the state of technology (SOT). The co-product, distiller's grain with solubles (DGS), can notably affect fiber ethanol's GHG emissions, and this impact may need to be further examined when evidence of DGS market impacts becomes available. (c) 2018 Society of Chemical Industry and John Wiley & Sons, Ltd

biofuel↗

Performance of a Vertical‐Slot Fish Pass for the Sea Lamprey Petromyzon marinus L. and Habitat Recolonization

Abstract In 2011, a vertical‐slot fish pass was built at the Coimbra Açude‐Ponte dam (Mondego River, Portugal), approximately 45 km upstream from the river mouth. The performance of this infrastructure for sea lamprey passage was evaluated between 2011 and 2015 using several complementary methodologies, namely radio telemetry [conventional and electromyogram (EMG)], passive integrated transponder (PIT) telemetry and electrofishing surveys. During the study period, the electrofishing revealed a 29‐fold increase in the abundance of larval sea lamprey upstream of the fish pass. Of the 20 radio‐tagged individuals released downstream from the dam, 33% managed to find and successfully surpass the obstacle in less than 2 weeks, reaching the spawning areas located in the upstream stretch of the main river and in one important tributary. Fish pass efficiency was assessed with a PIT antenna installed in the last upstream pool and revealed a 31% efficiency, with differences between and within migratory seasons. Time of day and river flow significantly influenced the attraction efficiency of the fish pass, with lampreys negotiating it mainly during the night period and when discharge was below 50 m 3 s −1 . Sea lampreys tagged with EMG transmitters took 3 h to negotiate the fish pass, during which high muscular effort was only registered during passage, or passage attempts, of the vertical slots. The use of complementary methodologies provided a comprehensive passage evaluation for sea lamprey, a species for which there is a considerable paucity of valuable data concerning behavioural, physiological and environmental influences on obstacle negotiation. Copyright © 2016 John Wiley & Sons, Ltd. Copyright © 2016 John Wiley & Sons, Ltd.

Pereira, E.↗

Perinatal exposure to organohalogen pollutants decreases vasopressin content and its mRNA expression in magnocellular neuroendocrine cells activated by osmotic stress in adult rats

Polychlorinated biphenyls (PCBs) and polybrominated diphenyl ethers (PBDEs) are environmental pollutants that produce neurotoxicity and neuroendocrine disruption. They affect the vasopressinergic system but their disruptive mechanisms are not well understood. Our group reported that rats perinatally exposed to Aroclor-1254 (A1254) and DE-71 (commercial mixtures of PCBs and PBDEs) decrease somatodendritic vasopressin (AVP) release while increasing plasma AVP responses to osmotic activation, potentially emptying AVP reserves required for body-water balance. The aim of this research was to evaluate the effects of perinatal exposure to A1254 or DE-71 (30 mg kg/day) on AVP transcription and protein content in the paraventricular and supraoptic hypothalamic nuclei, of male and female rats, by in situ hybridization and immunohistochemistry. cFOS mRNA expression was evaluated in order to determine neuroendocrine cells activation due to osmotic stimulation. Animal groups were: vehicle (control); exposed to either A1254 or DE-71; both, control and exposed, subjected to osmotic challenge. The results confirmed a physiological increase in AVP-immunoreactivity (AVP-IR) and gene expression in response to osmotic challenge as reported elsewhere. In contrast, the exposed groups did not show this response to osmotic activation, they showed significant reduction in AVP-IR neurons, and AVP mRNA expression as compared to the hyperosmotic controls. cFOS mRNA expression increased in A1254 dehydrated groups, suggesting that the AVP-IR decrease was not due to a lack of the response to the osmotic activation. Therefore, A1254 may interfere with the activation of AVP mRNA transcript levels and protein, causing a central dysfunction of vasopressinergic system. - Highlights: • Perinatal exposure to A1254 and DE-71 disrupts the vasopressin system of adult rats. • Exposure to organohalogens reduces AVP responses to osmotic stress in PVN and SON. • Perinatal exposure to A1254 fails to increase AVP mRNA in the hyperosmotic challenge. • Hyperosmotic stress and A1254 exposure activate cFOS gene in PVN and SON neurons. • Perinatal exposure to A1254 disrupts the AVP system similarly in Wistar and SD rats.

60 APPLIED LIFE SCIENCES↗

Understanding the Spatial Organization of Simultaneous Heavy Precipitation Events Over the Conterminous United States

We introduce the idea of simultaneous heavy precipitation events (SHPEs) to understand whether extreme precipitation has a spatial organization manifested as specified tracks or contiguous fields with inherent scaling relationships. For this purpose, we created a database of SHPEs using ground-based precipitation observations recorded by the daily Global Historical Climatology Network across the conterminous United States during 1900–2014. SHPEs are examined for their seasonality, spatial manifestation, orientation, and areal extent. We quantified the spatial distribution of the centroids and principal axes of SHPEs and their quasi-elliptical manifestations, azimuthal orientations, and areal extents on the ground. Four seasons, December-January-February (DJF), March-April-May (MAM),June-July-August (JJA), and September-October-November (SON) are considered to examine the spatial patterns and associated large-scale atmospheric circulations. Results indicate that there are 54, 58, 103, and204 SHPEs in DJF, MAM, JJA, and SON seasons, and their longest stretches range on average between 650and 1,600, between 850 and 1,500, between 950 and 1,550, and between 750 and 1,450 km, respectively. SHPEs in the DJF, MAM, and JJA seasons occur mostly over the Pacific coast and central and midwestern United States, respectively. The atmospheric circulation patterns and mechanisms of precipitable water vapor and moisture transport in the atmosphere are also discussed in relation to these SHPEs. Power laws explain SHPEs' underlying area scaling behavior in all the four seasons, with stronger evidence in DJF and MAM. A seasonal spatial risk model is developed to predict the likelihood of SHPEs. Quantifying the characteristics of SHPEs and modeling their footprints can improve the projections of flood risk and understanding of damages to interconnected infrastructure systems.

54 ENVIRONMENTAL SCIENCES↗

A finite-volume scheme for modeling compressible magnetohydrodynamic flows at low Mach numbers in stellar interiors

Fully compressible magnetohydrodynamic (MHD) simulations are a fundamental tool for investigating the role of dynamo amplification in the generation of magnetic fields in deep convective layers of stars. The flows that arise in such environments are characterized by low (sonic) Mach numbers ($\mathscr{M}$ son ≲ 10 –2 ). In these regimes, conventional MHD codes typically show excessive dissipation and tend to be inefficient as the Courant–Friedrichs–Lewy (CFL) constraint on the time step becomes too strict. In this work we present a new method for efficiently simulating MHD flows at low Mach numbers in a space-dependent gravitational potential while still retaining all effects of compressibility. The proposed scheme is implemented in the finite-volume SEVEN-LEAGUE HYDRO (SLH) code, and it makes use of a low-Mach version of the five-wave Harten–Lax–van Leer discontinuities (HLLD) solver to reduce numerical dissipation, an implicit–explicit time discretization technique based on Strang splitting to overcome the overly strict CFL constraint, and a well-balancing method that dramatically reduces the magnitude of spatial discretization errors in strongly stratified setups. The solenoidal constraint on the magnetic field is enforced by using a constrained transport method on a staggered grid. We carry out five verification tests, including the simulation of a small-scale dynamo in a star-like environment at $\mathscr{M}$ son ~ 10 –3 . We demonstrate that the proposed scheme can be used to accurately simulate compressible MHD flows in regimes of low Mach numbers and strongly stratified setups even with moderately coarse grids.

79 ASTRONOMY AND ASTROPHYSICS↗