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At least 19 records
All sourcesNASA NTRSDOE OSTI
DOE OSTI2018

Accidental Father-to-Son HIV-1 Transmission During the Seroconversion Period

A 4-year-old child born to an HIV-1 seronegative mother was diagnosed with HIV-1, the main risk factor being transmission from the child's father who was seroconverting at the time of the child's birth. In the context of a forensic investigation, here we aimed to identify the source of infection of the child and date of the transmission event. Samples were collected from the father and child at two time points about 4 years after the child's birth. Partial segments of three HIV-1 genes (gag, pol, and env) were sequenced and maximum likelihood (ML) and Bayesian methods were used to determine direction and estimate date of transmission. Neutralizing antibodies were determined using a single cycle assay. Bayesian trees displayed a paraphyletic–monophyletic topology in all three genomic regions, with the father's host label at the root, which is consistent with father-to-son transmission. ML trees found similar topologies in gag and pol and a monophyletic–monophyletic topology in env. Analysis of the time of the most recent common ancestor of each HIV-1 gene population indicated that the child was infected shortly after the father. Consistent with the infection history, both father and son developed broad and potent HIV-specific neutralizing antibody responses. In conclusion, the direction of transmission implicated the father as the source of transmission. Transmission occurred during the seroconversion period when the father was unaware of the infection and was likely accidental. This case shows how genetic, phylogenetic, and serological data can contribute for the forensic investigation of HIV transmission.

60 APPLIED LIFE SCIENCES↗
DOE OSTI2021

A Father’s Day Tribute Father-son Nobel Prize-winning physicists worked together at the Lab

Partners in physics during the World War II years, father and son Niels and Aage Bohr worked side by side on the Lab’s top-secret effort to create the first atomic bombs. Arriving in Los Alamos in late 1943, Aage was just 21 years old. He had been studying physics to follow in the footsteps of his father, who had won a Nobel Prize in 1922. Aage’s higher education, however, had been interrupted by the rapid spread of Nazism in Europe. The Bohrs, who had Jewish heritage, fled their native Denmark to escape persecution, eventually arriving in Los Alamos to aid in the creation of weapons that would help end the war. Their story is part of the collections at the National Security Research Center, which is the Lab’s classified library and also houses unclassified historic materials. While at Los Alamos, Niels and Aage were accorded VIP status because of the family’s scientific renown and given new names to protect their identities: Aage was James Baker, while his father was Nicholas Baker, but the scientific community called him Uncle Nick. Whether called Niels and Aage or Nick and Jim, father and son were inseparable.

71 CLASSICAL AND QUANTUM MECHANICS, GENERAL PHYSIC↗
DOE OSTI2021

Harold Agnew’s son gives Lab never-before-seen photos, documents

When I arrived at Los Alamos in 2003, the Laboratory’s long-retired third director was still a very popular figure. He was so popular, in fact, that he enjoyed an honor typically reserved for only the most adored and outrageous pop stars and Brazilian footballers: He was known by one name. Back then, most Lab staff knew exactly who you were talking about when you referred to “Harold.” Harold Agnew was at the helm from 1970 – 1979, though his career here began when he was still just in his 20s. He was recruited to work on the U.S. government’s top-secret project to build the first atomic bombs and help bring a swift end to World War II. Harold died in 2013 at 92, but March 28 would have been his 100th birthday. Although he’s no longer here to celebrate with us, we can gain inspiration by remembering his remarkable life of service – and mischief. Both are now well-documented in the collections of the National Security Research Center (NSRC), the Lab’s classified library, which also includes unclassified pieces of our history. The NSRC’s newest addition to its collections comes from Harold’s son John Agnew, who just recently gave me a box of about 250 images and about 15 documents that belonged to his dad. The contents are nothing short of remarkable, one-of-a-kind, and in some cases, hilarious. As the NSRC staff are accessioning these pieces into the Lab’s collections, looking through these materials is a chance for me to remember our former director and my friend.

96 KNOWLEDGE MANAGEMENT AND PRESERVATION↗
DOE OSTI2018

Analytical Modeling of Triple-Metal Hetero-Dielectric DG SON TFET

In this paper, a 2-D analytical model of triple-metal hetero-dielectric DG TFET is presented by combining the concepts of triple material gate engineering and hetero-dielectric engineering. Three metals with different work functions are used as both front- and back gate electrodes to modulate the barrier at source/channel and channel/drain interface. In addition to this, front gate dielectric consists of high-K HfO{sub 2} at source end and low-K SiO{sub 2} at drain side, whereas back gate dielectric is replaced by air to further improve the ON current of the device. Surface potential and electric field of the proposed device are formulated solving 2-D Poisson’s equation and Young’s approximation. Based on this electric field expression, tunneling current is obtained by using Kane’s model. Several device parameters are varied to examine the behavior of the proposed device. The analytical model is validated with TCAD simulation results for proving the accuracy of our proposed model.

75 CONDENSED MATTER PHYSICS, SUPERCONDUCTIVITY AND↗
NASA NTRS1998

Replication-deficient adenovirus vector transfer of gfp reporter gene into supraoptic nucleus and subfornical organ neurons

The present studies used defined cells of the subfornical organ (SFO) and supraoptic nuclei (SON) as model systems to demonstrate the efficacy of replication-deficient adenovirus (Ad) encoding green fluorescent protein (GFP) for gene transfer. The studies investigated the effects of both direct transfection of the SON and indirect transfection (i.e., via retrograde transport) of SFO neurons. The SON of rats were injected with Ad (2 x 10(6) pfu) and sacrificed 1-7 days later for cell culture of the SON and of the SFO. In the SON, GFP fluorescence was visualized in both neuronal and nonneuronal cells while only neurons in the SFO expressed GFP. Successful in vitro transfection of cultured cells from the SON and SFO was also achieved with Ad (2 x 10(6) to 2 x 10(8) pfu). The expression of GFP in in vitro transfected cells was higher in nonneuronal (approximately 28% in SON and SFO) than neuronal (approximately 4% in SON and 10% in SFO) cells. The expression of GFP was time and viral concentration related. No apparent alterations in cellular morphology of transfected cells were detected and electrophysiological characterization of transfected cells was similar between GFP-expressing and nonexpressing neurons. We conclude that (1) GFP is an effective marker for gene transfer in living SON and SFO cells, (2) Ad infects both neuronal and nonneuronal cells, (3) Ad is taken up by axonal projections from the SON and retrogradely transported to the SFO where it is expressed at detectable levels, and (4) Ad does not adversely affect neuronal viability. These results demonstrate the feasibility of using adenoviral vectors to deliver genes to the SFO-SON axis. Copyright 1998 Academic Press.

NASA Discipline Regulatory Physiology↗
DOE OSTI2024

Soil carbon change in intensive agriculture after 25 years of conservation management

Changes in soil organic carbon (SOC) and nitrogen (SON) are strongly affected by land management but few long-term comparative studies have surveyed changes throughout the whole soil profile. We quantified 25-year SOC and SON changes to 1 m in 10 replicate ecosystems at an Upper Midwest, USA site. We compared four annual cropping systems in maize (Zea mays)-soybean (Glycine max)-winter wheat (Triticum aestivum) rotations, each managed differently (Conventional, No-till, Reduced input, and Biologically based); in three managed perennial systems (hybrid Poplar (Populus × euramericana), Alfalfa (Medicago sativa), and Conifer (Pinus spp.); and in three successional systems (Early, Mid- and Late succession undergoing a gradual change in species composition and structure over time). Both Reduced input and Biologically based systems included winter cover crops. Neither SOC nor SON changed significantly in the Conventional or Late successional systems over 25 years. All other systems gained SOC and SON to different degrees. SOC accrual was fastest in the Early successional system (0.8 ± 0.1 Mg C ha –1 y –1 ) followed by Alfalfa and Conifer (avg. 0.7 ± 0.1 Mg C ha –1 y –1 ), Poplar, Reduced input, and Biologically based systems (avg. 0.4 ± 0.1 Mg C ha –1 y –1 ), and Mid-successional and No-till systems (0.3 and 0.2 Mg C ha –1 y –1 , respectively). Over the most recent 12 years, rates of SOC accrual slowed in all systems except Reduced input and Mid-successional. There was no evidence of SOC loss at depth in any system, including No-till. Rates of SON accrual ranged from 64.7 to 0.8 kg N ha –1 y –1 in the order Alfalfa ≥ Early successional > Reduced input and Biologically based ≥ Poplar > No-till and Conifer > Mid-successional systems. Pyrogenic C levels in the Conventional, Early, and Late successional systems were similar despite 17 years of annual burning in the Early successional system (~ 15 % of SOC to 50 cm, on average, and ~40 % of SOC from 50 to 100 cm). Results underscore the importance of cover crops, perennial crops, and no-till options for sequestering whole profile C in intensively managed croplands.

60 APPLIED LIFE SCIENCES↗
DOE OSTI2018

Amino acid δ 15 N indicates lack of N isotope fractionation during soil organic nitrogen decomposition

The interpretation of natural abundance δ 15 N in soil profiles and across ecosystems is confounded by a lack of understanding of possible N isotope fractionation associated with soil organic nitrogen (SON) decomposition. We analyzed the δ 15 N of hydrolysable amino acids to test the extent of fractionation associated with the depolymerization of peptides to amino acids and the mineralization of amino acids to NH 4 + (ammonification). Most amino acids are both synthesized and degraded by microbes, complicating interpretation of their δ 15 N. However, the “source” amino acids phenylalanine and hydroxyproline are degraded and recycled but not resynthesized. We therefore used their δ 15 N to isolate the effects of N isotope fractionation during SON depolymerization and ammonification. We used complementary field and laboratory approaches to evaluate the change in amino acid δ 15 N during decomposition. First, we measured amino acid δ 15 N changes with depth in the organic horizons of podzolic soils collected from the Newfoundland and Labrador Boreal Ecosystem Latitudinal Transect (NL-BELT), Canada. The δ 15 N of most amino acids increased with depth by 3–7‰, similar to the increase in bulk δ 15 N. However, the δ 15 N of the “source” amino acids did not change with depth, indicating lack of N isotope fractionation during their depolymerization and ammonification. Second, we assessed the change in amino acid δ 15 N following 400 days of laboratory incubation. This approach isolated the effect of decomposition on δ 15 N by eliminating plant N uptake and reducing leaching of N from the soil. Amino acid δ 15 N did not change during incubation despite extensive turnover of the amino acid pool, supporting our conclusion of a lack of N isotope fractionation during SON decomposition. Finally, our results indicate the often-observed trend of increasing δ 15 N with soil depth likely results from the mycorrhizally-mediated transfer of 14 N from depth to the surface and accumulation of 15 N-enriched necromass of diverse soil microbes at depth, rather than as a direct result of SON decomposition.

59 BASIC BIOLOGICAL SCIENCES↗
NASA NTRS2001

Adenovirus-mediated gene delivery to cells of the magnocellular hypothalamo-neurohypophyseal system

The objective of the present study was to define the optimum conditions for using replication-defective adenovirus (Ad) to transfer the gene for the green fluorescent protein (GFP) to the hypothalamic paraventricular (PVN) and supraoptic (SON) nuclei and cells of the neurohypophysis (NH). As indicated by characterizing cell survival over 15 days in culture and in electrophysiological whole cell patch-clamp studies, viral concentrations up to 2 x 10(7) pfu/coverslip did not affect viability of transfected PVN and NH cultured cells from preweanling rats. At 2 x 10(7) pfu, GFP gene expression was higher (40% of GFP-positive cells) and more sustained (up to 15 days). Using a stereotaxic approach in adult rats, we were able to directly transduce the PVN, SON, and NH and visualize gene expression in coronal brain slices and in the pituitary 4 days after injection of Ad. In animals receiving NH injections of Ad, the virus was retrogradely transported to PVN and SON neurons as indicated by the appearance of GFP-positive neurons in cultures of dissociated cells from those brain nuclei and by polymerase chain reaction and Western blot analyses of PVN and SON tissues. Adenoviral concentrations of up to 8 x 10(6) pfu injected into the NH did not affect cell viability and did not cause inflammatory responses. Adenoviral injection into the pituitary enabled the selective delivery of genes to the soma of magnocellular neurons. The experimental approaches described here provide potentially useful strategies for the treatment of disordered expression of the hormones vasopressin or oxytocin. Copyright 2000 Academic Press.

Non-NASA Center↗
NASA NTRS1999

Characterization of ionic currents of cells of the subfornical organ that project to the supraoptic nuclei

The subfornical organ (SFO) is a forebrain structure that converts peripheral blood-borne signals reflecting the hydrational state of the body to neural signals and then through efferent fibers conveys this information to several central nervous system structures. One of the forebrain areas receiving input from the SFO is the supraoptic nucleus (SON), a source of vasopressin synthesis and control of release from the posterior pituitary. Little is known of the transduction and transmission processes by which this conversion of systemic information to brain input occurs. As a step in elucidating these mechanisms, the present study characterized the ionic currents of dissociated cells of the SFO that were identified as neurons that send efferents to the SON. A retrograde tracer was injected into the SON area in eleven-day-old rats. After three days for retrograde transport of the label, the SFOs of these animals were dissociated and plated for tissue culture. The retrograde tracer was used to identify the soma of SFO cells projecting to the SON so that voltage-dependent ionic currents using whole-cell voltage clamp methods could be studied. The three types of currents in labeled SFO neurons were characterized as a 1) rapid, transient inward current that can be blocked by tetrodotoxin (TTX) characteristic of a sodium current; 2) slow-onset sustained outward current that can be blocked by tetraethylammonium (TEA) characteristic of a delayed rectifier potassium current; and 3) remaining outward current that has a rapid-onset and transient characteristic of a potassium A-type current. Copyright 1999 Elsevier Science B.V.

Non-NASA Center↗
DOE OSTI2023

Development of a Supercharged Octane Number and a Supercharged Octane Index

Gasoline knock resistance is characterized by the Research and Motor Octane Number (RON and MON), which are rated on the CFR octane rating engine at naturally aspirated conditions. However, modern automotive downsized boosted spark ignition (SI) engines generally operate at higher cylinder pressures and lower temperatures relative to the RON and MON tests. Using the naturally aspirated RON and MON ratings, the octane index (OI) characterizes the knock resistance of gasolines under boosted operation by linearly extrapolating into boosted “beyond RON” conditions via RON, MON, and a linear regression K factor. Using OI solely based on naturally aspirated RON and MON tests to extrapolate into boosted conditions can lead to significant errors in predicting boosted knock resistance between gasolines due to non-linear changes in autoignition and knocking characteristics with increasing pressure conditions. Here, a new “Supercharged Octane Number” (SON) method was developed on the CFR engine at increased intake pressures, which improved the correlation to boosted knock-limited automotive SI engine data over RON for several surrogate fuels and gasolines, including five “Co-Optima” RON 98 fuels and an E10 regular grade gasoline. Furthermore, the conventional OI was extended to a newly introduced Supercharged Octane Index (OI S ) based on SON and RON, which significantly improved the correlation to fuel knock resistance measurements from modern boosted SI engine knock-limited spark advance tests. This demonstrated the first proof of concept of a SON and OI S to better characterize a fuel’s knock resistance in modern boosted SI engines.

42 ENGINEERING↗
NASA NTRS1999

Adenovirus-mediated gene delivery to hypothalamic magnocellular neurons in mice

Vasopressin is synthesized by magnocellular neurons in supraoptic (SON) and paraventricular (PVN) hypothalamic nuclei and released by their axon terminals in the neurohypophysis (NH). With its actions as an antidiuretic hormone and vasoactive agent, vasopressin plays a pivotal role in the control of body fluids and cardiovascular homeostasis. Because of its well-defined neurobiology and functional importance, the SON/PVN-NH system is ideal to establish methods for gene transfer of genetic material into specific pathways in the mouse central nervous system. In these studies, we compared the efficiency of transferring the gene lacZ, encoding for beta-galactosidase (beta-gal), versus a gene encoding for green fluorescent protein by using replication-deficient adenovirus (Ad) vectors in adult mice. Transfection with viral concentrations up to 2 x 10(7) plaque-forming units per coverslip of NH, PVN, and SON in dissociated, cultured cells caused efficient transfection without cytotoxicity. However, over an extended period of time, higher levels (50% to 75% of the cells) of beta-gal expression were detected in comparison with green fluorescent protein (5% to 50% of the cells). With the use of a stereotaxic approach, the pituitary glands of mice were injected with Ad (4 x 10(6) plaque-forming units). In material from these animals, we were able to visualize the expression of the beta-gal gene in the NH and in magnocellular neurons of both the PVN and SON. The results of these experiments indicate that Ad-Rous sarcoma virus promoter-beta-gal is taken up by nerve terminals at the injection site (NH) and retrogradely transported to the soma of the neurons projecting to the NH. We conclude that the application of these experimental approaches will provide powerful tools for physiological studies and potential approaches to deliver therapeutic genes to treat diseases.

Non-NASA Center↗
NASA NTRS2009

Statistical and Scaling Properties of Remotely-Sensed Soil Moisture in Two Contrasting Domains in the North American Monsoon Region

Characterizing soil moisture (theta) variability is important for inferring high-resolution information from coarse estimates provided by remote sensors. In this study, we analyze the spatial variability and scale invariance of high-resolution theta estimates collected in two contrasting semiarid areas, Arizona (AZ) and Sonora (SON), during the Soil Moisture Experiment - North American Monsoon in 2004 (SMEX04- NAME). Results reveal that as the mean theta condition ( ) becomes drier, the spatial standard deviation becomes smaller in both domains. The coefficient of variation of theta decreases with in SON, but does not display a clear tendency with in AZ. We also found the presence of scale invariance and multifractality in the range of support scales from 51.2 km to 0.8 km for all soil moisture fields in the two regions. The multifractal properties of theta are clearly linked to in SON, while the relation is affected by more dispersion in AZ. We argue this is due to differences in the dynamic (rainfall) and static (vegetation) controls on theta in the two domains.

Mascaro, Giuseppe↗
NASA NTRS2021

Comparison of Monthly IMERG Precipitation Estimates with PACRAIN Atoll Observations

Satellite-based precipitation estimates provide valuable information where surface observations are not readily available, especially over the large expanses of the ocean where in situ precipitation observations are very sparse. This study compares monthly precipitation estimates from the Integrated Multisatellite Retrievals for GPM (IMERG) with gauge observations from 37 low-lying atolls from the Pacific Rainfall Database for the period June 2000–August 2020. Over the analysis period, IMERG estimates are slightly higher than the atoll observations by 0.67% with a monthly correlation of 0.68. Seasonally, DJF shows excellent agreement with a near-zero bias, while MAM shows IMERG is low by 4.6%, and JJA is high by 1.2%. SON exhibits the worst performance, with IMERG overestimating by 6.5% compared to the atolls. The seasonal correlations are well contained in the range 0.67–0.72, with the exception of SON at 0.62. Furthermore, SON has the highest RMSE at 4.70 mm day^(−1), making it the worst season for all metrics. Scatterplots of IMERG versus atolls show IMERG, on average, is generally low for light precipitation accumulations and high for intense precipitation accumulations, with best agreement at intermediate rates. Seasonal variations exist at light and intermediate rate accumulations, but IMERG consistently overestimates at intense precipitation rates. The differences between IMERG and atolls vary over time but do not exhibit any discernible trend or dependence on atoll population. The PACRAIN atoll gauges are not wind-loss corrected, so application of an appropriate adjustment would increase the precipitation amounts compared to IMERG. These results provide useful insight to users as well as valuable information for future improvements to IMERG.

David T. Bolvin↗
DOE OSTI2018

Life-cycle greenhouse gas emissions of corn kernel fiber ethanol

Corn kernel fiber ethanol that can be produced concurrently with corn starch ethanol has recently been approved as cellulosic biofuel in the USA, suggesting that fiber ethanol could be eligible for a higher credit price than conventional starch ethanol due to its anticipated lower greenhouse gas (GHG) emissions. A life-cycle analysis was conducted to quantify ethanol's GHG emissions. Here we show that fiber ethanol's life-cycle GHG emissions (36-39 g CO(2)e MJ(-1)) are close to meeting the US cellulosic biofuel's legislative mandate of 60% GHG emissions reduction relative to gasoline (similar to 94 g CO(2)e MJ(-1)), with slightly lower emissions under the nth plant mature fiber technology than under the state of technology (SOT). The co-product, distiller's grain with solubles (DGS), can notably affect fiber ethanol's GHG emissions, and this impact may need to be further examined when evidence of DGS market impacts becomes available. (c) 2018 Society of Chemical Industry and John Wiley & Sons, Ltd

biofuel↗
DOE OSTI2017

Perinatal exposure to organohalogen pollutants decreases vasopressin content and its mRNA expression in magnocellular neuroendocrine cells activated by osmotic stress in adult rats

Polychlorinated biphenyls (PCBs) and polybrominated diphenyl ethers (PBDEs) are environmental pollutants that produce neurotoxicity and neuroendocrine disruption. They affect the vasopressinergic system but their disruptive mechanisms are not well understood. Our group reported that rats perinatally exposed to Aroclor-1254 (A1254) and DE-71 (commercial mixtures of PCBs and PBDEs) decrease somatodendritic vasopressin (AVP) release while increasing plasma AVP responses to osmotic activation, potentially emptying AVP reserves required for body-water balance. The aim of this research was to evaluate the effects of perinatal exposure to A1254 or DE-71 (30 mg kg/day) on AVP transcription and protein content in the paraventricular and supraoptic hypothalamic nuclei, of male and female rats, by in situ hybridization and immunohistochemistry. cFOS mRNA expression was evaluated in order to determine neuroendocrine cells activation due to osmotic stimulation. Animal groups were: vehicle (control); exposed to either A1254 or DE-71; both, control and exposed, subjected to osmotic challenge. The results confirmed a physiological increase in AVP-immunoreactivity (AVP-IR) and gene expression in response to osmotic challenge as reported elsewhere. In contrast, the exposed groups did not show this response to osmotic activation, they showed significant reduction in AVP-IR neurons, and AVP mRNA expression as compared to the hyperosmotic controls. cFOS mRNA expression increased in A1254 dehydrated groups, suggesting that the AVP-IR decrease was not due to a lack of the response to the osmotic activation. Therefore, A1254 may interfere with the activation of AVP mRNA transcript levels and protein, causing a central dysfunction of vasopressinergic system. - Highlights: • Perinatal exposure to A1254 and DE-71 disrupts the vasopressin system of adult rats. • Exposure to organohalogens reduces AVP responses to osmotic stress in PVN and SON. • Perinatal exposure to A1254 fails to increase AVP mRNA in the hyperosmotic challenge. • Hyperosmotic stress and A1254 exposure activate cFOS gene in PVN and SON neurons. • Perinatal exposure to A1254 disrupts the AVP system similarly in Wistar and SD rats.

60 APPLIED LIFE SCIENCES↗