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At least 19 records
All sourcesNASA NTRSDOE OSTI
DOE OSTI2024

Using phenology to unravel differential soil water use and productivity in a semiarid savanna

Savannas are water-limited ecosystems characterized by two dominant plant types: trees and an understory primarily made up grass. Different phenology and root structures of these plant types complicate how savanna primary productivity responds to changes in water availability. We tested the hypothesis that productivity in savannas is controlled by the temporal and vertical distribution of soil water content (SWC) and differences in growing season length of understory and tree plant functional types. To quantify the relationship between tree, understory, and savanna-wide phenology and productivity, we used PhenoCam and satellite observations surrounding an eddy covariance tower at a semiarid savanna site in Arizona, USA. We distinguished between SWC across two different depth intervals (shallow, <0–30 cm and deep, >30–100 cm). We found that tree greenness increased with SWC at both depths, while understory greenness was only sensitive to the shallower SWC measurements. Onset of ecosystem dormancy, estimated from satellite observations close to the eddy covariance tower, explained more variability in annual gross primary productivity (GPP) than in other phenometrics. Higher SWC led to an extended growing season, caused by delayed dormancy in trees, but the understory showed no evidence of delayed dormancy in wetter periods. We infer that the timing of ecosystem scale dormancy, driven by trees, is important in understanding changes in a savanna's GPP. These findings highlight the important effects of rainfall during the winter. These findings suggest that savanna GPP is conditional on different responses to moisture availability in each of the dominant vegetation components.

54 ENVIRONMENTAL SCIENCES↗
DOE OSTI2021

Linking soil biodiversity and ecosystem function in a Neotropical savanna

Conserving the remaining savanna ecosystems in the Brazilian savanna (Cerrado) — a global biodiversity hotspot that stores carbon and provides water to a large portion of South America — requires understanding the ecological processes maintaining their function. Nutrient cycling supports savanna function via plant litter production and decomposition by soil fauna, releasing nutrients for plant and soil organism uptake. Soil biodiversity and biogeochemistry linkages with litter dynamics in Neotropical savannas under a changing climate are poorly understood. Here, in this study, we combined two years of rainfall seasonality, leaf and wood litter production and decomposition with soil epigeic fauna abundance — the number of ground-surface dwelling invertebrates collected through pitfall traps — taxa richness, Shannon's diversity and Pielou's evenness, and 16 soil biogeochemical variables measured in 12 plots of preserved savanna. Rainfall seasonality modulated the mean soil epigeic fauna diversity and evenness across all plots, which were highest in the rainy season, in contrast to litterfall rates, which peaked in the dry season. In the dry season (April to September), the Formicidae family was the most abundant with 50% of all individuals, while in the rainy season (October to March), the Isoptera order was the most abundant with approximately 39% of individuals. Wood litter decomposition grouped with annual Hemiptera abundance, co-varying with soil epigeic fauna diversity and evenness per plot and against soil fertility variables. Leaf litter decomposition co-varied with the total epigeic fauna abundance and soil pH. We speculate that the specific need to decompose wood litter may be associated with a greater need for diversity than an abundance of soil epigeic fauna. Our work highlights the role of rainfall seasonality on soil biodiversity and physicochemistry, which is also tightly linked with litter production and decomposition. This study advances our understanding of the mechanisms governing nutrient cycling in savanna ecosystems on nutrient-impoverished soils, with implications for achieving sustainable conservation and restoration goals.

59 BASIC BIOLOGICAL SCIENCES↗
DOE OSTI2021

Large ecosystem-scale effects of restoration fail to mitigate impacts of land-use legacies in longleaf pine savannas

Ecological restoration is a global priority, with potential to reverse biodiversity declines and promote ecosystem functioning. Yet, successful restoration is challenged by lingering legacies of past land-use activities, which are pervasive on lands available for restoration. Although legacies can persist for centuries following cessation of human land uses such as agriculture, we currently lack understanding of how land-use legacies affect entire ecosystems, how they influence restoration outcomes, or whether restoration can mitigate legacy effects. Using a large-scale experiment, we evaluated how restoration by tree thinning and land-use legacies from prior cultivation and subsequent conversion to pine plantations affect fire-suppressed longleaf pine savannas. In this work, we evaluated 45 ecological properties across four categories: 1) abiotic attributes, 2) organism abundances, 3) species diversity, and 4) species interactions. The effects of restoration and land-use legacies were pervasive, shaping all categories of properties, with restoration effects roughly twice the magnitude of legacy effects. Restoration effects were of comparable magnitude in savannas with and without a history of intensive human land use; however, restoration did not mitigate numerous legacy effects present prior to restoration. As a result, savannas with a history of intensive human land use supported altered properties, especially related to soils, even after restoration. The signature of past human land-use activities can be remarkably persistent in the face of intensive restoration, influencing the outcome of restoration across diverse ecological properties. Understanding and mitigating land-use legacies will maximize the potential to restore degraded ecosystems.

60 APPLIED LIFE SCIENCES↗
DOE OSTI2023

AmeriFlux FLUXNET-1F US-LS2 San Pedro River Lewis Springs Savanna

This is the AmeriFlux Management Project (AMP) created FLUXNET-1F version of the carbon flux data for the site US-LS2 San Pedro River Lewis Springs Savanna. This is the FLUXNET version of the carbon flux data for the site US-LS2 San Pedro River Lewis Springs Savanna produced by applying the standard ONEFlux (1F) software. Site Description - A riparian savanna located on an old alluvial terrace about 0.5 km from the banks of the entrenched San Pedro River in southeastern Arizona USA. Site climate is semiarid with monsoonal (Jul-Sep) rainfall. The trees access groundwater (depth of ~7 m)from an alluvial aquifer recharged elsewhere. Therefore, site water balance is not closed and ET greatly exceeds precipitation. The perennial bunchgrasses use primarily rainfall. This groundwater-using ecosystem is far more ebulliant and productive than the upland vegetation around it (shrublands and grasslands) outside of the San Pedro River corridor.

Scott, Russell↗
DOE OSTI2023

AmeriFlux FLUXNET-1F US-SRS Santa Rita Savanna

This is the AmeriFlux Management Project (AMP) created FLUXNET-1F version of the carbon flux data for the site US-SRS Santa Rita Savanna. This is the FLUXNET version of the carbon flux data for the site US-SRS Santa Rita Savanna produced by applying the standard ONEFlux (1F) software. Site Description - The study site is located in the Santa Rita Experimental Range, approximately 45 km south of Tucson, Arizona, within the Sonoran Desert. The rangeland has undergone a shift from a semiarid grassland to a savanna due to the encroachment of the woody leguminous tree Prosopis velutina Woot., or velvet mesquite. A pair of adjacent watersheds of similar size ( 1.08 ha and 1.10 ha) was established to investigate the effects of mesquite removal on hydrologic processes. In 1974, diesel oil was applied basally to all trees in one watershed, with reapplication as needed and dead tree removal for wood, whereas the other watershed, where the flux tower is located, has continued in the woody plant encroachment process. In 2016, an herbicide process was applied to the area around the EC flux tower.

Vivoni, Enrique R.↗
DOE OSTI2022

What lies beneath: Vertical temperature heterogeneity in a Mediterranean woodland savanna

As the availability of satellite and airborne thermal infrared remote sensing (TIR-RS) data increases and their spatial, temporal, and spectral resolutions improve, researchers are finding diverse applications for TIR-RS measurements. TIR-RS is now commonly applied in regional- and continental-scale analyses, such as those focused on fire and surface energy balance. However, its application lags in plant physiology and ecology, for which a finer-scale understanding of plant canopy temperatures would be useful to elucidate plant water dynamics, for example. In particular, while methods to disaggregate TIR-RS pixels in horizontal space have advanced, possible vertical stratification of plant canopy temperature and its implications for understanding the correspondence between TIR-RS and finer-scale, field-based thermal measurements (e.g. made with a thermal camera) remain unexplored. Here, we use data from a thermal camera deployed concurrently with the recent ECOSTRESS mission to quantify vertical temperature gradients within tree canopies and temperatures of over- vs. under-story plants in a Mediterranean woodland savanna. We then leverage diverse ancillary data to maximize the geometric comparability of ECOSTRESS and thermal camera measurements, in order to assess the extent to which the two forms of thermal measurements correspond. Specifically, we ask: (1) What are the patterns of intra-canopy and over- vs. under-story vertical temperature in a Mediterranean woodland savanna?, and (2) How can vertically-resolved, but spatially-limited field-based temperature measurements be reconciled with spatially-extensive, but surface-only, temperature measurements of a space-borne remote sensor? Further, we found consistent patterns of vertical thermal heterogeneity both within tree canopies and between ecosystem over- and under-stories. The daytime difference between the top and bottom thirds of blue oak canopies was, on average, 0.48 ° C – and sometimes several times larger. Notably, canopy tops are cooler, likely associated with the under-story grass reaching daytime temperatures often exceeding over-story temperatures by 10° C. Given the consistency of the intra-canopy temperature gradients, we expected the ECOSTRESS sensor would be in better agreement with camera measurements of canopy tops than bulk canopies or canopy bottoms. However, within-canopy gradients were overwhelmed by other sources of disagreement between the measurements, in part associated with upscaling camera measurements across space. Overall, thermal camera and ECOSTRESS measurements were largely in agreement at night (pixel RMSE = 1.1°C), but they were more divergent during times of low (but >0 W/m2) and high incoming solar radiation (daytime pixel RMSE = 3.5°C).

54 ENVIRONMENTAL SCIENCES↗
DOE OSTI2020

AmeriFlux US-LS2 San Pedro River Lewis Springs Savanna

This is the AmeriFlux version of the carbon flux data for the site US-LS2 San Pedro River Lewis Springs Savanna. Site Description - A riparian savanna located on an old alluvial terrace about 0.5 km from the banks of the entrenched San Pedro River in southeastern Arizona USA. Site climate is semiarid with monsoonal (Jul-Sep) rainfall. The trees access groundwater (depth of ~7 m)from an alluvial aquifer recharged elsewhere. Therefore, site water balance is not closed and ET greatly exceeds precipitation. The perennial bunchgrasses use primarily rainfall. This groundwater-using ecosystem is far more ebulliant and productive than the upland vegetation around it (shrublands and grasslands) outside of the San Pedro River corridor.

Scott, Russell↗
DOE OSTI2020

AmeriFlux US-SRS Santa Rita Experimental Range Mesquite Savanna

This is the AmeriFlux version of the carbon flux data for the site US-SRS Santa Rita Experimental Range Mesquite Savanna. Site Description - The study site is located in the Santa Rita Experimental Range, approximately 45 km south of Tucson, Arizona, within the Sonoran Desert. The rangeland has undergone a shift from a semiarid grassland to a savanna due to the encroachment of the woody leguminous tree Prosopis velutina Woot., or velvet mesquite. A pair of adjacent watersheds of similar size ( 1.08 ha and 1.10 ha) was established to investigate the effects of mesquite removal on hydrologic processes. In 1974, diesel oil was applied basally to all trees in one watershed, with reapplication as needed and dead tree removal for wood, whereas the other watershed, where the flux tower is located, has continued in the woody plant encroachment process. In 2016, an herbicide process was applied to the area around the EC flux tower.

Vivoni, Enrique R.↗
DOE OSTI2021

Seismic savanna: machine learning for classifying wildlife and behaviours using ground‐based vibration field recordings

Abstract We develop a machine learning approach to detect and discriminate elephants from other species, and to recognise important behaviours such as running and rumbling, based only on seismic data generated by the animals. We demonstrate our approach using data acquired in the Kenyan savanna, consisting of 8000 h seismic recordings and 250 k camera trap pictures. Our classifiers, different convolutional neural networks trained on seismograms and spectrograms, achieved 80%–90% balanced accuracy in detecting elephants up to 100 m away, and over 90% balanced accuracy in recognising running and rumbling behaviours from the seismic data. We release the dataset used in this study: SeisSavanna represents a unique collection of seismic signals with the associated wildlife species and behaviour. Our results suggest that seismic data offer substantial benefits for monitoring wildlife, and we propose to further develop our methods using dense arrays that could result in a seismic shift for wildlife monitoring.

Szenicer, Alexandre↗
DOE OSTI2023

Interannual variability of spring and summer monsoon growing season carbon exchange at a semiarid savanna over nearly two decades

Eddy covariance measurements of land-atmosphere energy, carbon, and water exchange now span multiple decades at some sites, supporting an improved understanding of flux interannual variability (IAV) and its ecophysiological and physical controls. Most eddy covariance IAV studies have focused on temperate forest ecosystems, where carbon fluxes are large and flux records are longest – but also where IAV is much lower than in dryland regions, which have been identified as an essential driver of the trend and variability in the global terrestrial carbon sink. In this study, we leveraged 19 years of continuous micrometeorological measurements at the AmeriFlux US-SRM mesquite savanna site in southern Arizona, USA to quantify the IAV, trends, and drivers of carbon fluxes during the distinct spring and summer growing seasons. We also assessed the ability of modern satellite and land surface models to capture the IAV of seasonal water and carbon fluxes. Annual net ecosystem production (NEP) was small and highly variable (23 +/- 64 gC m –2 yr –1 ). Precipitation and associated measures of water availability determined most of the variability in NEP, largely through their influence on annual and seasonal gross ecosystem productivity (GEP) as opposed to ecosystem respiration (ER). Root-zone soil moisture captured between 73% (spring) and 85% (summer) of GEP variability and between 73% (spring) and 58% (summer) of ER variability. Throughout the study period, soil moisture and greenness increased with associated increases in GEP, ER and NEP. These trends were strongly influenced by very productive and wet summer growing seasons during the last two years, which were characterized by abundant understory grass cover. Typically, less than half of the variability in growing season GEP and evapotranspiration was captured by satellite-based estimates and land surface model simulations with local site forcing and calibration, highlighting the ongoing utility of long-term datasets to support careful model testing and improvement.

54 ENVIRONMENTAL SCIENCES↗
DOE OSTI2022

The Diurnal Dynamics of Gross Primary Productivity Using Observations From the Advanced Baseline Imager on the Geostationary Operational Environmental Satellite‐R Series at an Oak Savanna Ecosystem

Gross primary productivity (GPP) is the largest flux in the global carbon cycle and satellite-based GPP estimates have long been used to study the trends and interannual variability of GPP. With recent updates to geostationary satellites, we can now explore the diurnal variability of GPP at a comparable spatial resolution to polar-orbiting satellites and at temporal frequencies comparable to eddy covariance (EC) tower sites. We used observations from the Advanced Baseline Imager on the Geostationary Operational Environmental Satellite-R series (GOES-R) to test the ability of subdaily satellite data to capture the shifts in the diurnal course of GPP at an oak savanna EC site in California, USA that is subject to seasonal soil moisture declines. We compared three methods to estimate GPP: (a) a light-use efficiency model, (b) a linear relationship between the product of near-infrared reflectance of vegetation and photosynthetically active radiation (LIN-NIR v P) and EC tower GPP, and (c) a light response curve (LRC-NIR v P) between NIR v P and EC GPP. The LRC-NIR v P achieved the lowest mean absolute error for winter (2 µmol CO 2 m –2 s –1 ), spring (2.51 µmol CO 2 m –2 s –1 ), summer (1.43 µmol CO 2 m –2 s –1 ), and fall (1.35 µmol CO 2 m –2 s –1 ). The ecosystem experienced the largest shift in daily peak GPP in relation to the peak of incoming solar radiation toward the morning hours during the dry summers. The LRC-NIRvP and the light-use efficiency model were in agreement with these patterns of a shift in peak daily GPP toward the morning hours during summer. Our results can help develop diurnal estimates of GPP from geostationary satellites that are sensitive to fluctuating environmental conditions during the day.

54 ENVIRONMENTAL SCIENCES↗
DOE OSTI2023

Population Subdivision in the Gopher Frog (Rana capito) across the Fragmented Longleaf Pine-Wiregrass Savanna of the Southeastern USA

Delineating genetically distinct population segments of threatened species and quantifying population connectivity are important steps in developing effective conservation and management strategies aimed at preventing extinction. The gopher frog (Rana capito) is a xeric-adapted, pond-breeding species endemic to the Gulf and Atlantic coastal plains of the southeastern United States. This species has experienced extensive habitat loss and fragmentation in the formerly widespread longleaf pine-wiregrass savanna where it lives, resulting in individual abundance declines and population extinctions throughout its range. We used individual-based clustering methods along with Bayesian inference of historical migration based on almost 1500 multilocus microsatellite genotypes to examine genetic structure in this taxon. Clustering analyses identified panhandle and peninsular populations in Florida as distinct genetic clusters separated by the Aucilla River, consistent with the division between the Coastal Plain and peninsular mitochondrial lineages, respectively. Analysis of historical migration indicated an east–west population divergence event followed by immigration to the east. Together, our results indicate that the genetically distinct Coastal Plain and peninsular Florida lineages should be considered separately for conservation and management purposes.

59 BASIC BIOLOGICAL SCIENCES↗
DOE OSTI2024

Alternating Conditional Expectations: Introducing a Non‐Parametric Statistical Method to Interpret Long‐Term Greenhouse Gas Flux Measurements Over Semi‐Arid and Wetland Ecosystems

Abstract We explore the potential of using a non‐parametric statistical method called Alternating Conditional Expectations, ACE, to quantify functional relationships in biogeosciences. Here, ACE is used to quantify the non‐linear and multi‐faceted responses of greenhouse gas fluxes to a set of biophysical forcings, when the shapes of those response surfaces are unknown. We evaluated the statistical method over two contrasting ecosystems and two contrasting time steps. One case involved quantifying the biophysical controls of water vapor and carbon dioxide (CO 2 ) fluxes over a semi‐arid oak savanna using daily integrated fluxes. The other case evaluated the responses of CO 2 and methane (CH 4 ) flux measurements to a set of biophysical forcings at a restored tidal wetland using thirty‐minute averages. The statistical model, based on 4 independent variables, explained up over 90% of the variation in daily integrated flux densities of water vapor and net carbon dioxide exchange at the savanna site. This fit was defined by distinct non‐linear responses to such drivers as gross primary production, photosynthetically active radiation, air temperature, vapor pressure deficit and soil moisture. At the tidal wetland site, we evaluated net carbon dioxide and methane fluxes with short‐term measurements to capture the influence of rising and falling tides and seasonality in biological activity. The statistical model defined the shape of the forcing of fluxes due to the roles of carbon exudates, water table depth, oxygen level in the water column, temperature and vegetation status. The statistical fits of the greenhouse gas fluxes were less precise than the savanna case. The fetch varies on a run‐to‐run basis as it is comprised of a heterogeneous mosaic of open water and vegetation. Furthermore, it is difficult to monitor the environmental conditions of the archaea and bacteria in the sediments that produce methane and carbon dioxide.

Environmental Sciences & Ecology↗
DOE OSTI2021

A Co-design Framework for Online Data Analysis and Reduction

Science applications preparing for the exascale era are increasingly exploring in situ computations comprising of simulation-analysis-reduction pipelines coupled in-memory. Efficient composition and execution of such complex pipelines for a target platform is a codesign process that evaluates the impact and tradeoffs of various application- and system-specific parameters. In this article, we describe a toolset for automating performance studies of composed HPC applications that perform online data reduction and analysis. We describe Cheetah, a new framework for composing parametric studies on coupled applications, and Savanna, a runtime engine for orchestrating and executing campaigns of codesign experiments. Furthermore, this toolset facilitates understanding the impact of various factors such as process placement, synchronicity of algorithms, and storage versus compute requirements for online analysis of large data. Ultimately, we aim to create a catalog of performance results that can help scientists understand tradeoffs when designing next-generation simulations that make use of online processing techniques. We illustrate the design of Cheetah and Savanna, and present application examples that use this framework to conduct codesign studies on small clusters as well as leadership class supercomputers.

97 MATHEMATICS AND COMPUTING↗