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At least 19 records

Toward an international practical pressure scale: A proposal for an IPPS ruby gauge (IPPS-Ruby2020)

At the 26 th AIRAPT conference in 2017, a task group was formed to work on an International Practical Pressure Scale (IPPS). This report summarizes the activities of the task group toward an IPPS ruby gauge. We have selected three different approaches to establishing the relation between pressure ( P ) and ruby R1-line shift ( Δλ ) with three groups of optimal reference materials for applying these approaches. Using a polynomial form of the second order, the recommended ruby gauge (referred as Ruby2020) is expressed by: P [ G P a ] = 1.87 ( ± 0.01 ) × 10 3 Δ λ λ 0 1 + 5.63 ( ± 0.03 ) Δ λ λ 0 , where λ 0 is the wavelength of the R1-line near 694.25 nm at ambient condition. In June of 2020, the Executive Committee of AIRAPT endorsed the proposed Ruby2020. Finally, we encourage high-pressure practitioners to utilize Ruby2020 within its applicable pressure range (up to 150 GPa), so that pressure data can be directly compared across laboratories and amended consistently as better scales emerge in the future.

75 CONDENSED MATTER PHYSICS, SUPERCONDUCTIVITY AND↗

Miscanthus giganteus Biolistic Transformation Using the Visible RUBY Red Marker Gene to Monitor Transformation Efficiency

Miscanthus × giganteus ( M × g ) is a high-yielding perennial C4 bioenergy crop, but genetic improvement by breeding is constrained by triploid sterility and clonal propagation. Improving genetic transformation methods for M × g would provide opportunities for advantageous trait introgression. Use of an easy to phenotype reporter gene is a promising strategy to improve transformation processes and efficiency. This study presents an efficient novel method for biolistic transformation of inflorescence-derived callus in M × g and demonstrates its efficacy using RUBY, a betalain-based noninvasive reporter that is visible throughout the transformation process. RUBY expression ( Zea mays codon optimized) was visible from callus stage through plantlet development into maturity. RUBY expressing independently transformed plants were confirmed by hygromycin phosphotransferase ELISA and by genomic PCR demonstrating that the RUBY phenotype is sufficient for screening transformants. The Zea mays codon optimized hygromycin selection marker was driven by previously established promoters for Miscanthus, ZmUBI and 2×35S, while the RUBY gene expression was controlled by a known Zea mays C4 promoter, Brachypodium UBI10, newly employed in Miscanthus. The construct containing the 2×35S promoter for hygromycin had a 15.1% transformation efficiency while the ZmUBI promoter had a 20.5% transformation efficiency. This study provides a novel, highly efficient protocol for successful biolistic transformation of M × g for stable expression. This study also demonstrates that RUBY expression can be used as a convenient and powerful monitor of transformation in ongoing and future work to engineer M × g into an improved bioproduct feedstock.

RUBY↗

Data for Miscanthus giganteus Biolistic Transformation Using the Visible RUBY Red Marker Gene to Monitor Transformation Efficiency

Miscanthus × giganteus ( M × g ) is a high- yielding perennial C4 bioenergy crop, but genetic improvement by breeding is constrained by triploid sterility and clonal propagation. Improving genetic transformation methods for M × g would provide opportunities for advantageous trait introgression. Use of an easy to phenotype reporter gene is a promising strategy to improve transformation processes and efficiency. This study presents an efficient novel method for biolistic transformation of inflorescence- derived callus in M × g and demonstrates its efficacy using RUBY, a betalain-based noninvasive reporter that is visible throughout the transformation process. RUBY expression ( Zea mays codon optimized) was visible from callus stage through plantlet development into maturity. RUBY expressing independently transformed plants were confirmed by hygromycin phosphotransferase ELISA and by genomic PCR demonstrating that the RUBY phenotype is sufficient for screening transformants. The Zea mays codon optimized hygromycin selection marker was driven by previously established promoters for Miscanthus, ZmUBI and 2×35S, while the RUBY gene expression was controlled by a known Zea mays C4 promoter, Brachypodium UBI10, newly employed in Miscanthus. The construct containing the 2×35S promoter for hygromycin had a 15.1% transformation efficiency while the ZmUBI promoter had a 20.5% transformation efficiency. This study provides a novel, highly efficient protocol for successful biolistic transformation of M × g for stable expression. This study also demonstrates that RUBY expression can be used as a convenient and powerful monitor of transformation in ongoing and future work to engineer M × g into an improved bioproduct feedstock. **NOTE: in "TableS2_ProtocolComparison.csv", the data from row 665 to 971 should be removed.

Gene Editing↗

Calibration of ruby and matlockite luminescence lines from the melting of mercury: constraints on the initial slopes

We have measured the luminescence shifts of the ruby’s R1- and R2-lines and the line of 5 D 0 → 7 F 0 from Sm 2+ :SrFCl corresponding to the melting pressure of mercury that is recommended by the AIRAPT task force as an International Practical Pressure Scale (IPPS). The linear coefficients of the pressure dependence of the R1-, R2-lines, and the luminescence line of Sm 2+ :SrFCl are determined to be 0.3722 ± 0.002, 0.3796 ± 0.002, and 1.123 ± 0.002 nm/GPa, respectively. The results not only put tight constraints on the initial slopes of ruby and Sm 2+ :SrFCl gauges, but also link the luminescence-based pressure gauges to the more fundamental primary piston gauges.

36 MATERIALS SCIENCE↗

Simultaneous compression of NaCl, Au, and ruby: toward mutually consistent pressure scales

Here, we evaluate pressure consistency of equations of state (EOS) for NaCl and Au at 300 K. The simultaneous measurements of unit-cell volumes (V) with ruby R1 line shifts (Δλ) in a helium (He) loaded diamond cell effectively remove potential systematic errors. Compression and decompression data were automatically collected at 1 sec interval, yielding a dense dataset with >8,000 (V, Δλ) pairs each for NaCl and Au. Solidification of He has noticeable effects on both V and Delta lambda (hence P). Only data up to similar to 14 GPa, or 6000 (V, P) pairs, can be considered hydrostatic within the resolution. The P-V data are fitted to the Rydberg-Vinet and the 3 rd order Birch-Murnaghan EOS. Predicted pressures of these EOSs agree with those given by the Ruby2020 ruby scale to within +/- 0.05 GPa. Overall, pressures predicted by the Rydberg-Vinet EOS are in better agreement with the average of commonly used NaCl and Au pressure scales.

38 RADIATION CHEMISTRY, RADIOCHEMISTRY, AND NUCLEA↗

Eocene-Oligocene Metamorphism, Fluid Flow and Deformation in the Ruby Mountains-East Humboldt Range Metamorphic Core Complex

Metamorphic core complexes are ubiquitous in collapsed orogens globally and play a primary role in crustal exhumation. Here, we investigate the metamorphic history of the Ruby Mountains-East Humboldt Range metamorphic core complex, Nevada, using petrochronology to understand how magmatism, metamorphism and deformation interact to modulate crustal rheology, and the timing of exhumation within the Sevier orogenic belt. Field study, microstructural analysis, thermobarometry and laser ablation split-stream monazite, titanite and allanite petrochronology of the mylonitic footwall were integrated to elucidate the pressure-temperature-time (P-T-t) evolution. Major-, trace-element and quartz-in-garnet thermobarometry show peak metamorphism occurred at 5.5–6 kbar and 600–650°C across the study area. Monazite and titanite U-(Th)-Pb petrochronology constrain this episode of metamorphism to 88–81 Ma with the structurally deepest samples yielding dates down to ca. 71 Ma. The preservation of peak metamorphic mineral assemblages indicates these rocks remained at near-peak temperature conditions into the Cenozoic. Cenozoic metamorphism occurred during a punctuated episode contemporaneous with the Great Basin ignimbrite flare up. All samples show a distinct 39–37 Ma population of monazite, titanite and allanite dates that correlate with the emplacement of quartz diorite and gabbro intrusions throughout the footwall. Accessory phases contain zoning textures in backscattered electron images that are consistent with fluid-mediated dissolution-reprecipitation reactions. The U-(Th)-Pb analyses from these zones yield 39–27 Ma dates interpreted as the timing of fluid flow. The results of this study elucidate the integrated importance of magmatism, melting and fluid flow in driving the coupled evolution of Late Cretaceous metamorphism within the Sevier hinterland and the subsequent Cenozoic metamorphic core complex development that exhumed the middle crust.

58 GEOSCIENCES↗

Dynamic Rubies

Algorithmic art selected as a winner of the contest Pixel by Pixel: The Art of CHANCE, to be published in the April 2024 issue of CHANCE, the magazine of the American Statistical Association.

43 PARTICLE ACCELERATORS↗

Remote Alaska Communities Energy Efficiency Competition: Energy Efficiency for the Gem of the Yukon (Final Report)

Over the past decade, the City of Ruby has been proactive in working to reduce cost and energy use in the community. Ruby (Tl’aa’ologhe) is a remote city in Alaska located on the south bank of the Yukon River near the Kilbuck-Kuskokwim Mountains, about 50 air miles east of Galena and 230 air miles west of Fairbanks. As of 2019, the community has a population of over 150 people and most of Ruby’s residents are Koyukon Athabascan. Ruby has a long history of promoting local efficiency and clean energy in an effort to become more sustainable. Between 2007-2010, the community hosted Alaska’s first demonstration of an in-river hydrokinetic test project, sponsored by the Yukon River Inter-Tribal Watershed Council. In 2011, a 5kW solar photo-voltaic (PV) array was installed by the Interior Regional Housing Authority. In 2012, the community had a new power plant constructed by the Alaska Energy Authority that supplies waste heat to the washeteria, clinic and public safety garage, saving the community more than 4,000 gallons of heating fuel per year. The clinic, constructed by the Tanana Chiefs Conference, is one of the most energy efficient buildings in the interior and utilizes new building efficiency standards that were passed by the tribes. It has a 5kW solar PV array that provides energy into the local electric grid and offsets approximately 20% of the annual energy use. Building on this legacy, the City of Ruby entered into Department of Energy’s (DOE’s) Remote Alaska Communities Energy Efficiency Competition (RACEE) in 2016, pledging to reduce per-capita energy use 15% by 2020. During the second phase of the competition, 13 communities including Ruby were provided funding for tailored technical assistance to measure energy use and create energy efficiency plans.

29 ENERGY PLANNING, POLICY, AND ECONOMY↗

pnnl/building_sync_rails

BuildingSyncRails is a library for the Ruby on Rails [1] web application development framework that leverages the Isomorphic library for the Ruby programming language (IPID Submission #11610) in order to provide BuildingSync [2] XML capabilities to Ruby on Rails applications. BuildingSyncRails provides the following capabilities: Capability to download the most recent version of the BuildingSync XML schema document from GitHub and to automatically convert said document into Ruby code. Toolkit for constructing and manipulating Ruby objects that represent BuildingSync XML elements. BuildingSyncRails builds upon the capabilities of the Isomorphic library for the Ruby programming language; specializing the generic capabilities of the Isomorphic library for BuildingSync specifically, e.g., by providing a library of BuildingSyncfriendly methods to simplify the construction of BuildingSync XML documents.

Borkum, Mark↗

pnnl/isomorphic

Isomorphic is a Ruby library for specifying isomorphisms between Ruby objects. The inventive features of the new Ruby library are as follows: Domain-specific language (DSL) for declaration of isomorphisms between Ruby objects. Functional references (viz., "lenses") for getter/setter operations. To our knowledge, this is the first library of its kind for the Ruby programming language. Moreover, to our knowledge, this is the first implementation of the "functional references" concept within the Ruby programming language.

Borkum, Mark↗

BESTEST-GSR (Building Energy Simulation Test - Generation Simulation and Reporting) 2023 [SWR 18-23]

Building Energy Simulation Test (BESTEST) is an NREL-developed method to validate the qualitative performance of different whole building simulations engines relative to each other. https://www.nrel.gov/docs/legosti/old/6231.pdf The purpose of this repository is to generate BESTEST test case models, run simulations, and populate data for ASHRAE Standard 140 reporting spreadsheets for EnergyPlus® based whole building simulation tools. It was originally setup for 2014 version of Standard 140. In May of 2022 it was updated to the 2020 version of Standard 140. This update included updates and additions to existing test suites, the bulk of which was in Section 5.2 (Building Thermal Envelope and Fabric Load Tests). We did not add Section 5.5 Airside HVAC Equipment Performance, but we hope to add that later in 2022. At some point we also hope to add Section 5.2.4 ground modeling, which is currently excluded. Supported Tools The default IDF generation is based on the OpenStudio® CLI, but the workflow supports a 'Bring your own IDF' use case. Additionally, for non-EnergyPlus® based tools the post processing scripts can be used if simulation results are provided as a CSV file.The scripts on this repository should work on Mac, Windows, and Linux. Dependencies Install OpenStudio® 3.4.0 make sure command line can recognize the 'openstudio' command This includes EnergyPlus® 22.1 Install Ruby on your system if it isn't already setup. 2.7 is used for development but other versions may work Since OpenStudio has its own embedded Ruby, which is used for running measures, you don't necessarily have to use a version of Ruby supported by OpenStudio. Install RubyXL Ruby gem This is used to modify Microsoft Excel spreadsheets Install Parallel Ruby gem This allows the CLI to run simulations in parallel

Goldwasser, David↗

Control of deviatoric stress in the diamond anvil cell through thermal expansion mismatch stress in thin films

Elastic and plastic properties of materials and phase transitions at extreme conditions vary with both hydrostatic pressure and deviatoric stress. To generate and measure controlled deviatoric stress at pressures beyond those accessible with large volume differential and rotational presses and optical access for spectroscopy, experiments tested the combination of diamond anvil cell and thin film technology. Thin films of polycrystalline Cr-doped Al 2 O 3 ruby were prepared using pulsed laser deposition on single-crystal substrates of either Al 2 O 3 sapphire or yttria-stabilized cubic zirconia for contrasting initial film stress, and loaded in diamond anvil cells for confining stress. The piezospectroscopic response of the ruby films demonstrates consistently higher deviatoric stress in the film on zirconia relative to the film on the control sapphire, and an increase in deviatoric stress with applied load. Complementary synchrotron X-ray diffraction of the zirconia substrate confirmed that no pressure-induced phase transitions impacted the stress state of the ruby film, but differences in compressibility of film and substrate result in changes in film stress analogous to thermal expansion mismatch. Furthermore, this technique may be applied to evaluate elastic and plastic response of thin films of a variety of materials under extreme stress.

36 MATERIALS SCIENCE↗

Split selectable marker systems utilizing inteins facilitate gene stacking in plants

The ability to stack multiple genes in plants is of great importance in the development of crops with desirable traits but can be challenging due to limited selectable marker options. Here we establish split selectable marker systems using protein splicing elements called “inteins” for Agrobacterium-mediated co-transformation in plants. First, we show that such a split selectable marker system can be used effectively in plants to reconstitute a visible marker, RUBY, from two non-functional fragments through tobacco leaf infiltration. Next, to determine the general applicability of our split selectable marker systems, we demonstrate the utility of these systems in the model plants Arabidopsis and poplar by successfully stacking two reporters eYGFPuv and RUBY, using split Kanamycin or Hygromycin resistance markers. In conclusion, this method enables robust plant co-transformation, providing a valuable tool for the simultaneous insertion of multiple genes into both herbaceous and woody plants efficiently.

59 BASIC BIOLOGICAL SCIENCES↗

Strength, deformation, and the fcc–hcp phase transition in condensed Kr and Xe to the 100 GPa pressure range

The rare gas solids exhibit systematic differences in crystal structure, phase transition conditions, bond strength, and other physical properties. The physical properties of heavy rare gas solids krypton and xenon are modified by the martensitic phase transition from face-centered cubic to hexagonal close packed structure over a broad pressure range. Crystal structure, strength, and plastic deformation of krypton and xenon have been investigated at 300 K using compression in the diamond-anvil cell with synchrotron angle-dispersive x-ray diffraction and complementary ruby fluorescence spectroscopy for Xe. Stacking faults indicative of the fcc–hcp phase transition are observed at pressures at and above 1.23 ± 0.05 and 1.9 ± 0.6 GPa in Kr and Xe, respectively. The transition remains incomplete in both solids to pressures greater than 100 GPa. Strength determined from stress measurements in Pt and ruby standards at pressures up to 111 GPa and complemented by observations of strain and texture measurements obtained by x-ray diffraction in the radial geometry to 100 GPa indicates similar or higher strength than Ar at all conditions, with significant stiffening at 15–20 GPa. Radial diffraction data reveal the persistence of broad highly textured fcc diffraction lines to 101 GPa in Xe, suggesting that the axial measurements may underestimate the metastable persistence of the fcc phase due to biased sampling of hcp crystallites resulting from preferred crystallite orientation. Kr and Xe are compared with He, Ne, and Ar for a systematic understanding of physical properties and phase equilibria of rare gas solids.

Compressive stress↗

Characterization of chromium impurities in β -Ga2O3

Chromium is a common transition-metal impurity that is easily incorporated during crystal growth. It is perhaps best known for giving rise to the 694.3 nm (1.786 eV) emission in Cr-doped Al2O3, exploited in ruby lasers. Chromium has also been found in monoclinic gallium oxide, a wide-bandgap semiconductor being pursued for power electronics. In this work, we thoroughly characterize the behavior of Cr in Ga2O3 through theoretical and experimental techniques. β-Ga2O3 samples are grown with the floating zone method and show evidence of a sharp photoluminescence signal, reminiscent of ruby. We calculate the energetics of formation of Cr from first principles, demonstrating that Cr preferentially incorporates as a neutral impurity on the octahedral site. Cr possesses a quartet ground-state spin and has an internal transition with a zero-phonon line near 1.8 eV. By comparing the calculated and experimentally measured luminescence lineshape function, we elucidate the role of coupling to phonons and uncover features beyond the Franck–Condon approximation. The combination of strong emission with a small Huang–Rhys factor of 0.05 and a technologically relevant host material renders Cr in Ga2O3 attractive as a quantum defect.

Turiansky, Mark E. (ORCID:0000000291543582)↗

pnnl/portfoliomanager-rb

This invention is a Ruby "gem" (library) that provides clients for ENERGY STAR Portfolio Manager (ESPM) Web Services, Inventive features: 100% coverage of version 18.0 of the ESPM API. Automated mapping between ESPM XML schemas and Ruby objects. Clients for both the "live" and "test" ESPM API environments. Debugging mode with HTTP request/response logging.

Borkum, Mark↗

Subtropical Eastern North Pacific SST bias in earth system models

Karthik Balaguru (PNNL), Luke Van Roekel (LLNL), L. Ruby Leung (PNNL) and Milena Veneziani (LLNL) Abstract: This study systematically evaluates the warm SST bias in the Subtropical Eastern North Pacific (SENP), a problem plaguing most CMIP6 models, using the Energy Exascale Earth System Model version 1 (E3SM). Compared to the model at its standard resolution (1o atmosphere, 30-60 km ocean), the SST bias improves in several regions at high resolution (0.25o atmosphere, 18-6 km ocean) except in subtropical eastern boundary regions, such as the SENP. A mixed layer heat budget analysis reveals that errors in the surface radiative fluxes and horizontal heat advection are primarily responsible for the bias. Analysis of HighResMIP models indicates that the lack of improvement in the SENP SST bias with resolution is not native to E3SM alone. A larger CMIP6 inter-model correlation of SST bias with biases in surface winds than radiation highlights the important role of large-scale circulation biases in the SENP SST bias in coupled models.

Balaguru, Karthik↗