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Exploring Applied Cryptosystems to Formally Verify Security in Cyber-Physical Systems

This project aims to evaluate RSA as a method for public-key encryption for cyber-physical systems (CPS). As technology advances, cyber attacks are increasing, and with them, the need for cybersecurity advances; the average cost for cybercrime in the world was estimated at $6 trillion in 2021. A public-key cryptosystem that has been around since 1977, RSA has recently garnered some critiques for its fragility, computational cost, and lazy implementation. In this project I will review the mathematical derivation of RSA, analyze the practical implications of such mathematical framework for the security of RSA, and propose a formal methods based approach to verify encryption schemes for CPS.

97 MATHEMATICS AND COMPUTING↗

Rejection Sampling with Autodifferentiation -- Case study: Fitting a Hadronization Model

We present an autodifferentiable rejection sampling algorithm termed Rejection Sampling with Autodifferentiation (RSA). In conjunction with reweighting, we show that RSA can be used for efficient parameter estimation and model exploration. Additionally, this approach facilitates the use of unbinned machine-learning-based observables, allowing for more precise, data-driven fits. To showcase these capabilities, we apply an RSA-based parameter fit to a simplified hadronization model.

72 PHYSICS OF ELEMENTARY PARTICLES AND FIELDS↗

Objective Phenotyping of Root System Architecture Using Image Augmentation and Machine Learning in Alfalfa (Medicago sativa L.)

Active breeding programs specifically for root system architecture (RSA) phenotypes remain rare; however, breeding for branch and taproot types in the perennial crop alfalfa is ongoing. Phenotyping in this and other crops for active RSA breeding has mostly used visual scoring of specific traits or subjective classification into different root types. While image-based methods have been developed, translation to applied breeding is limited. This research is aimed at developing and comparing image-based RSA phenotyping methods using machine and deep learning algorithms for objective classification of 617 root images from mature alfalfa plants collected from the field to support the ongoing breeding efforts. Our results show that unsupervised machine learning tends to incorrectly classify roots into a normal distribution with most lines predicted as the intermediate root type. Encouragingly, random forest and TensorFlow-based neural networks can classify the root types into branch-type, taproot-type, and an intermediate taproot-branch type with 86% accuracy. With image augmentation, the prediction accuracy was improved to 97%. Coupling the predicted root type with its prediction probability will give breeders a confidence level for better decisions to advance the best and exclude the worst lines from their breeding program. This machine and deep learning approach enables accurate classification of the RSA phenotypes for genomic breeding of climate-resilient alfalfa.

59 BASIC BIOLOGICAL SCIENCES↗

PRMI: A Dataset of Minirhizotron Images for Diverse Plant Root Study

Understanding a plant's root system architecture (RSA) is crucial for a variety of plant science problem domains including sustainability and climate adaptation. Minirhizotron (MR) technology is a widely-used approach for phenotyping RSA non-destructively by capturing root imagery over time. Precisely segmenting roots from the soil in MR imagery is a critical step in studying RSA features. In this paper, we introduce a large-scale dataset of plant root images captured by MR technology. In total, there are over 72K RGB root images across six different species including cotton, papaya, peanut, sesame, sunflower, and switchgrass in the dataset. The images span a variety of conditions including varied root age, root structures, soil types, and depths under the soil surface. All of the images have been annotated with weak image-level labels indicating whether each image contains roots or not. The image-level labels can be used to support weakly supervised learning in plant root segmentation tasks. In addition, 63K images have been manually annotated to generate pixel-level binary masks indicating whether each pixel corresponds to root or not. These pixel-level binary masks can be used as ground truth for supervised learning in semantic segmentation tasks. By introducing this dataset, we aim to facilitate the automatic segmentation of roots and the research of RSA with deep learning and other image analysis algorithms.

Xu, Weihuang↗