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At least 19 records

Molecular chaperone RAP interacts with LRP1 in a dynamic bivalent mode and enhances folding of ligand-binding regions of other LDLR family receptors

The low-density lipoprotein receptor (LDLR) family of receptors are cell-surface receptors that internalize numerous ligands and play crucial role in various processes, such as lipoprotein metabolism, hemostasis, fetal development, etc. Previously, receptor-associated protein (RAP) was described as a molecular chaperone for LDLR-related protein 1 (LRP1), a prominent member of the LDLR family. We aimed to verify this role of RAP for LRP1 and two other LDLR family receptors, LDLR and vLDLR, and to investigate the mechanisms of respective interactions using a cell culture model system, purified system, and in silico modelling. Upon coexpression of RAP with clusters of the ligand-binding complement repeats (CRs) of the receptors in secreted form in insect cells culture, the isolated proteins had increased yield, enhanced folding, and improved binding properties compared with proteins expressed without RAP, as determined by circular dichroism and surface plasmon resonance. Within LRP1 CR-clusters II and IV, we identified multiple sites comprised of adjacent CR doublets, which provide alternative bivalent binding combinations with specific pairs of lysines on RAP. Mutational analysis of these lysines within each of isolated RAP D1/D2 and D3 domains having high affinity to LRP1 and of conserved tryptophans on selected CR-doublets of LRP1, as well as in silico docking of a model LRP1 CR-triplet with RAP, indicated a universal role for these residues in interaction of RAP and LRP1. Consequently, we propose a new model of RAP interaction with LDLR family receptors based on switching of the bivalent contacts between molecules over time in a dynamic mode.

59 BASIC BIOLOGICAL SCIENCES↗

RAP: Resource-aware Automated GPU Sharing for Multi-GPU Recommendation Model Training and Input Preprocessing

Ensuring high-quality recommendations for newly onboarded users requires the continuous retraining of Deep Learning Recommendation Models (DLRMs) with freshly generated data. To serve the online DLRM retraining, existing solutions use hundreds of CPU computing nodes designated for input preprocessing, causing significant power consumption that surpasses even the power usage of GPU trainers. To this end, we propose RAP, an end-to-end DLRM training framework that supports Resource-aware Automated GPU sharing for DLRM input Preprocessing and Training. The core idea of RAP is to accurately capture the remaining GPU computing resources during DLRM training for input preprocessing, achieving superior training efficiency without requiring additional resources. Specifically, RAP utilizes a co-running cost model to efficiently assess the costs of various input preprocessing operations, and it implements a resource-aware horizontal fusion technique that adaptively merges smaller kernels according to GPU availability, circumventing any interference with DLRM training. In addition, RAP leverages a heuristic searching algorithm that jointly optimizes both the input preprocessing graph mapping and the co-running schedule to maximize the end-to-end DLRM training throughput. The comprehensive evaluation shows that RAP achieves 78.3× speedup on average over CPU-based DLRM input preprocessing frameworks. In addition, the end-to-end training throughput of RAP is only 2.04% lower than the ideal case, which has no input preprocessing overhead.

Wang, Zheng↗

Rapid Fabrication of Lightweight SiC Optics using Reactive Atom Plasma (RAP) Processing

Reactive Atom Plasma (RAP) processing is a non-contact, plasma-based processing technology that can be used to generate damage-free optical surfaces. We have developed tools and processes using RAP that allow us to shape extremely lightweight mirror Surfaces made from extremely hard-to-machine materials (e.g. SiC). We will describe our latest results using RAP in combination with other technologies to produce finished lightweight SiC mirrors and also discuss applications for RAP in the rapid fabrication of mirror segments for reflective and grazing incidence telescopes.

Fiske, Peter S.↗

Re-active Passive (RAP) Devices for Control of Noise Transmission through a Panel

Re-Active Passive (RAP) devices have been developed to control low frequency (<1000 Hz) noise transmission through a panel. These devices use a combination of active, re-active, and passive technologies packaged into a single unit to control a broad frequency range utilizing the strength of each technology over its best suited frequency range. The RAP device uses passive constrained layer damping to cover the relatively high frequency range (>200 Hz), reactive distributed vibration absorber) to cover the medium frequency range (75 to 250 Hz), and active control for controlling low frequencies (<200 Hz). The device was applied to control noise transmission through a panel mounted in a transmission loss test facility. Experimental results are presented for the bare panel, and combinations of passive treatment, reactive treatment, and active control. Results indicate that three RAP devices were able to increase the overall broadband (15-1000 Hz) transmission loss by 9.4 dB. These three devices added a total of 285 grams to the panel mass of 6.0 kg, or approximately 5%, not including control electronics.

Carneal, James P.↗

Meta-RaPS Algorithm for the Aerial Refueling Scheduling Problem

The Aerial Refueling Scheduling Problem (ARSP) can be defined as determining the refueling completion times for each fighter aircraft (job) on multiple tankers (machines). ARSP assumes that jobs have different release times and due dates, The total weighted tardiness is used to evaluate schedule's quality. Therefore, ARSP can be modeled as a parallel machine scheduling with release limes and due dates to minimize the total weighted tardiness. Since ARSP is NP-hard, it will be more appropriate to develop a ppro~imate or heuristic algorithm to obtain solutions in reasonable computation limes. In this paper, Meta-Raps-ATC algorithm is implemented to create high quality solutions. Meta-RaPS (Meta-heuristic for Randomized Priority Search) is a recent and promising meta heuristic that is applied by introducing randomness to a construction heuristic. The Apparent Tardiness Rule (ATC), which is a good rule for scheduling problems with tardiness objective, is used to construct initial solutions which are improved by an exchanging operation. Results are presented for generated instances.

Kaplan, Sezgin↗

Robotic Asteroid Prospector (RAP)

This report presents the results from the nine-month, Phase 1 investigation for the Robotic Asteroid Prospector (RAP). This project investigated several aspects of developing an asteroid mining mission. It conceived a Space Infrastructure Framework that would create a demand for in space-produced resources. The resources identified as potentially feasible in the near-term were water and platinum group metals. The project's mission design stages spacecraft from an Earth Moon Lagrange (EML) point and returns them to an EML. The spacecraft's distinguishing design feature is its solar thermal propulsion system (STP) that can provide for three functions:propulsive thrust, process heat for mining and mineral processing, and electricity. The preferred propellant is water since this would allow the spacecraft to refuel at an asteroid for its return voyage to Cis-Lunar space thus reducing the mass that must be staged out of the EML point.The spacecraft will rendezvous with an asteroid at its pole, match rotation rate, and attach to begin mining operations. The team conducted an experiment in extracting and distilling water from frozen regolith simulant.

Cohen, Marc↗

Model: 10-Day Retrospective, RAP, Config 02, Forecast Domain 01

The primary purpose of WFIP2 Model Development Team is to improve existing numerical weather prediction models in a manner that leads to improved wind forecasts in regions of complex terrain. Improvements in the models will come through better understanding of the physics associated with the wind flow in and around the wind plant across a range of temporal and spatial scales, which will be gained through WFIP2’s observational field study and analysis.

17 WIND ENERGY↗

Model: 10-Day Retrospective, RAP, Config 01, Forecast Domain 01

The primary purpose of WFIP2 Model Development Team is to improve existing numerical weather prediction models in a manner that leads to improved wind forecasts in regions of complex terrain. Improvements in the models will come through better understanding of the physics associated with the wind flow in and around the wind plant across a range of temporal and spatial scales, which will be gained through WFIP2’s observational field study and analysis.

17 WIND ENERGY↗

Evaluation of the Rapid Refresh Numerical Weather Prediction Model over Arctic Alaska

Abstract Despite a need for accurate weather forecasts for societal and economic interests in the U.S. Arctic, thorough evaluations of operational numerical weather prediction in the region have been limited. In particular, the Rapid Refresh Model (RAP), which plays a key role in short-term forecasting and decision-making, has seen very limited assessment in northern Alaska, with most evaluation efforts focused on lower latitudes. In the present study, we verify forecasts from version 4 of the RAP against radiosonde, surface meteorological, and radiative flux observations from two Arctic sites on the northern Alaskan coastline, with a focus on boundary layer thermodynamic and dynamic biases, model representation of surface inversions, and cloud characteristics. We find persistent seasonal thermodynamic biases near the surface that vary with wind direction, and may be related to the RAP’s handling of sea ice and ocean interactions. These biases seem to have diminished in the latest version of the RAP (version 5), which includes refined handling of sea ice, among other improvements. In addition, we find that despite capturing boundary layer temperature profiles well overall, the RAP struggles to consistently represent strong, shallow surface inversions. Further, while the RAP seems to forecast the presence of clouds accurately in most cases, there are errors in the simulated characteristics of these clouds, which we hypothesize may be related to the RAP’s treatment of mixed-phase clouds.

37 INORGANIC, ORGANIC, PHYSICAL, AND ANALYTICAL CH↗

Random adaptive tool path for zonal optics fabrication

Deterministic optics fabrication using sub-aperture tools has been vital for manufacturing precision optical surfaces. The fabrication process requires the tool influence function and the tool path to calculate the dwell time that guides the tool to bring surface quality within tight design tolerances. Widely used spiral and raster paths may leave excess waviness from the tool path, and the unavoidable constant removal layer is added to obtain positive dwell time. This waviness can be removed by either using smaller tools sequentially or randomizing the tool path. However, the existing tool-path solutions can hardly adapt to different surface aperture shapes and localized surface errors. Process efficiency and accuracy are also not well considered in tool-path planning. We propose an innovative zonal Random Adaptive Path (RAP) to solve these problems in this study. Firstly, RAP can be flexibly adapted to different surface aperture shapes by introducing part boundary. Secondly, an average threshold strategy is used in the RAP planning to improve efficiency, enabling the surface errors to be selectively corrected. Finally, the threshold is performed in several passes within one processing cycle, each with its RAP, until the desired residual is achieved. The performance of the proposed RAP is studied by comparing it with the conventional tool paths. The results demonstrated that RAP takes the least processing time and achieves the best surface quality, which verifies the effectiveness of RAP in deterministic optics fabrication.

36 MATERIALS SCIENCE↗

A computational model-based validation of Guyton's analysis of cardiac output and venous return curves

Guyton developed a popular approach for understanding the factors responsible for cardiac output (CO) regulation in which 1) the heart-lung unit and systemic circulation are independently characterized via CO and venous return (VR) curves, and 2) average CO and right atrial pressure (RAP) of the intact circulation are predicted by graphically intersecting the curves. However, this approach is virtually impossible to verify experimentally. We theoretically evaluated the approach with respect to a nonlinear, computational model of the pulsatile heart and circulation. We developed two sets of open circulation models to generate CO and VR curves, differing by the manner in which average RAP was varied. One set applied constant RAPs, while the other set applied pulsatile RAPs. Accurate prediction of intact, average CO and RAP was achieved only by intersecting the CO and VR curves generated with pulsatile RAPs because of the pulsatility and nonlinearity (e.g., systemic venous collapse) of the intact model. The CO and VR curves generated with pulsatile RAPs were also practically independent. This theoretical study therefore supports the validity of Guyton's graphical analysis.

NASA Discipline Cardiopulmonary↗

Jemez Pueblo Agriculture: Monitoring Rangeland Conditions to Inform Drought and Land Management in New Mexico

The Jemez Pueblo, a community located in the semi-arid high desert region of northcentral New Mexico, faces challenges with drought mitigation and livestock management. NASA DEVELOP partnered with the Pueblo of Jemez Natural Resources Department and The Nature Conservancy to provide recent and historical rangeland conditions to aid present decision-making, which relies on cultural practices, site familiarity, available resources, and physical data. This partnership offers the opportunity to support management practices by leveraging remote sensing and virtual fencing technologies. Our project explored Rangeland Analysis Platform (RAP) products incorporating NASA Earth observation Landsat 5 TM, Landsat 7 ETM+, Landsat 8 OLI, and Landsat 9 OLI-2 remote-sensed imagery as an agricultural land management tool. We performed linear regression analysis to evaluate RAP data to field data and explored RAP annual herbaceous biomass, ground cover trends, and climatic factors at the pasture level. We then computed study area summary statistics, performed pixel-by-pixel trend analysis across the study period, and evaluated ground cover trends near water sources. Based on available data, RAP was poorly correlated to bare ground and herbaceous biomass, generally underestimating the former and overestimating the latter. To improve the evaluation of RAP products, we suggest increasing the spatiotemporal distribution of the field dataset. According to RAP, from 1986 to 2023, the site became hotter and drier, bare ground increased, and annual forbs and grasses increased while perennials decreased. RAP products did not agree with field-collected data; however, the trends over time may be useful for informing rangeland management actions.

cattle grazing management↗

Three-dimensional Polymers as Organic Cathodes for Affordable and Sustainable Sodium/Potassium-ion Batteries

Redox-active polymers (RAPs) are promising organic electrode materials for affordable and sustainable batteries due to their flexible chemical structures and negligible solubility in the electrolyte. Developing high-dimensional RAPs with porous structures and crosslinkers can further improve their stability and redox capability by reducing the solubility and enhancing reaction kinetics. Further, this work reports two three-dimensional (3D) RAPs as stable organic cathodes in Na-ion batteries (NIBs) and K-ion batteries (KIBs). Carbonyl functional groups are incorporated into the repeating units of the RAPs by the polycondensation of Tetrakis(4-aminophenyl)methane and two different dianhydrides. The RAPs with interconnected 3D extended conjugation structures undergo multi-electron redox reactions and exhibit high performance in both NIBs and KIBs in terms of long cycle life (up to 8000 cycles) and fast charging capability (up to 2 A g -1 ). The results demonstrate that developing 3D RAPs is an effective strategy to achieve high-performance, affordable, and sustainable NIBs and KIBs.

25 ENERGY STORAGE↗

Salt matters: How ionic strength and electrolytes impact redox polymer reactivity and dynamics for energy storage

As the global demand for sustainable energy grows, redox-active polymers (RAPs) have emerged as promising materials for batteries due to their advantages in stability, ease of preparation, and low-cost processability. Despite factors traditionally known to impact polymer dynamics (e.g., temperature, viscosity, and structure), we posit that investigating the effect of ionic strength and/or supporting electrolyte types on the electrochemical performance of RAP systems is crucial, both in aqueous and nonaqueous systems. Here, we first highlight recent findings on RAP-electrolyte interactions, elucidating how their polyelectrolyte nature determines their redox activity. Then, we focus on strategies to enhance RAP performance for energy storage through ionic strength optimization and tailored electrolyte composition. These insights into the modulation of RAP reactivity provide a foundation for improving battery performance in both flow and stationary configurations, thus facilitating progress toward next-generation energy storage solutions.

25 ENERGY STORAGE↗